Open repository for EU-funded research outputs from Horizon Europe, Euratom, and earlier Framework Programmes.
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March 19, 2025 (0.7.0)SoftwareOpen
Enhancements & fixes Fetch information about the chromosomes of the assemblies. Used to power "grid plots". Fill in accurate read information in the blobDir. Users are now reqiured to indicate in the samplesheet whether the reads are paired or single. Updated the Blastn settings to allow 7 days runtime at most, since that covers 99.7% of...
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February 14, 2025 (v2)DatasetOpen
Neuromelanin (NM) granules were analysed in human post-mortem formalin-fixed paraffin embedded (FFPE) midbrain sections. The demographic table lists information for the cases used for these analyses. Sample images from these cases are provided in the 'Training images' folder. These images were used to train the software to identify NM granules....
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March 19, 2025 (0.28.4-beta)SoftwareOpen
What's Changed update semantics by @jsimonclark in https://github.com/emmo-repo/domain-electrochemistry/pull/140 Full Changelog: https://github.com/emmo-repo/domain-electrochemistry/compare/0.28.3-beta...0.28.4-beta
Uploaded on March 19, 2025
Part of Battery Interface Genome and Materials Acceleration Platform (BIG-MAP) EU Open Research Repository
33 more versions exist for this record
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March 17, 2025 (v1)DatasetOpen
The data generation details and computational framework for this dataset can be found in the manuscript below. If using this dataset in research or publication, please cite both this dataset and the corresponding paper. Emami, N., Gomez-Moreno, L. A., Klemettinen, A., Serna-Guerrero, R., & Todorović, M. (2025). An innovative data-driven...
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March 19, 2025 (v0.2.8)SoftwareOpen
## Contiging Solo: Generate assembly based on PacBio Hifi Reads. ### Inputs 1. Hifi long reads [fastq] 2. K-mer database [meryldb] 3. Genome profile summary generated by Genomescope [txt] 4. Homozygous Read Coverage. Optional, use if you think the estimation from Genomescope is inacurate. 5. Genomescope Model Parameters generated by...
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March 19, 2025 (v0.7.5)SoftwareOpen
Purge duplicates from one haplotype. Prerequisites: run after a k-mer profiling workflow (VGP 1 or 2) and a contiging workflow (VGP 3,4 or 5).
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March 19, 2025 (v0.3.2)SoftwareOpen
Assemble Genome using PacBio HiFi and HiC data for phasing. Prerequisite: Run k-mer profiling workflow (VGP1).
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March 19, 2025 (v0.8)SoftwareOpen
Purge contigs marked as duplicates by purge_dups (could be haplotypic duplication or overlap duplication). This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps (Workflow 3, 4, or 5)
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March 18, 2025 (v1)DatasetOpen
This dataset contains the results from the ODDPubb text mining algorithm and the findings from manual analysis. Full-text PDFs of all articles parallel-published by Linköping University in 2022 were extracted from the institute's repository, DiVA. These were analyzed using the ODDPubb (https://github.com/quest-bih/oddpub) text mining algorithm...
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March 19, 2025 (v0.0.9)SoftwareOpen
pyRTE-RRTMGP provides a Python interface to the RTE+RRTMGP (https://earth-system-radiation.github.io/rte-rrtmgp/) Fortran software package.
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