SR4ZCT: Self-supervised Through-Plane Resolution Enhancement for CT Images with Arbitrary Resolution and Overlap | SpringerLink
Skip to main content

SR4ZCT: Self-supervised Through-Plane Resolution Enhancement for CT Images with Arbitrary Resolution and Overlap

  • Conference paper
  • First Online:
Machine Learning in Medical Imaging (MLMI 2023)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 14348))

Included in the following conference series:

Abstract

Computed tomography (CT) is a widely used non-invasive medical imaging technique for disease diagnosis. The diagnostic accuracy is often affected by image resolution, which can be insufficient in practice. For medical CT images, the through-plane resolution is often worse than the in-plane resolution and there can be overlap between slices, causing difficulties in diagnoses. Self-supervised methods for through-plane resolution enhancement, which train on in-plane images and infer on through-plane images, have shown promise for both CT and MRI imaging. However, existing self-supervised methods either neglect overlap or can only handle specific cases with fixed combinations of resolution and overlap. To address these limitations, we propose a self-supervised method called SR4ZCT. It employs the same off-axis training approach while being capable of handling arbitrary combinations of resolution and overlap. Our method explicitly models the relationship between resolutions and voxel spacings of different planes to accurately simulate training images that match the original through-plane images. We highlight the significance of accurate modeling in self-supervised off-axis training and demonstrate the effectiveness of SR4ZCT using a real-world dataset.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
¥17,985 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
JPY 3498
Price includes VAT (Japan)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
JPY 8464
Price includes VAT (Japan)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
JPY 10581
Price includes VAT (Japan)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    https://github.com/jiayangshi/SR4ZCT.

References

  1. Angelopoulos, C., Scarfe, W.C., Farman, A.G.: A comparison of maxillofacial CBCT and medical CT. Atlas Oral Maxillofac. Surg. Clin. North Am. 20(1), 1–17 (2012)

    Article  Google Scholar 

  2. Brink, J.A.: Technical aspects of helical (spiral) CT. Radiol. Clin. North Am. 33(5), 825–841 (1995)

    Article  Google Scholar 

  3. Coward, J., et al.: Multi-centre analysis of incidental findings on low-resolution CT attenuation correction images. Br. J. Radiol. 87(1042), 20130701 (2014)

    Article  Google Scholar 

  4. Gavrielides, M.A., Zeng, R., Myers, K.J., Sahiner, B., Petrick, N.: Benefit of overlapping reconstruction for improving the quantitative assessment of CT lung nodule volume. Acad. Radiol. 20(2), 173–180 (2013)

    Article  Google Scholar 

  5. Hansen, P.C., Jørgensen, J., Lionheart, W.R.: Computed Tomography: Algorithms, Insight, and Just Enough Theory. SIAM (2021)

    Google Scholar 

  6. He, L., Huang, Y., Ma, Z., Liang, C., Liang, C., Liu, Z.: Effects of contrast-enhancement, reconstruction slice thickness and convolution kernel on the diagnostic performance of radiomics signature in solitary pulmonary nodule. Sci. Rep. 6(1), 34921 (2016)

    Article  Google Scholar 

  7. Honda, O., et al.: Computer-assisted lung nodule volumetry from multi-detector row CT: influence of image reconstruction parameters. Eur. J. Radiol. 62(1), 106–113 (2007)

    Article  Google Scholar 

  8. Iwano, S., et al.: Solitary pulmonary nodules: optimal slice thickness of high-resolution CT in differentiating malignant from benign. Clin. Imaging 28(5), 322–328 (2004)

    Article  Google Scholar 

  9. Kasales, C., et al.: Reconstructed helical CT scans: improvement in z-axis resolution compared with overlapped and nonoverlapped conventional CT scans. AJR Am. J. Roentgenol. 164(5), 1281–1284 (1995)

    Article  Google Scholar 

  10. Kingma, D.P., Ba, J.: Adam: a method for stochastic optimization. In: Bengio, Y., LeCun, Y. (eds.) 3rd International Conference on Learning Representations, ICLR 2015, San Diego, CA, USA, May 7–9, 2015, Conference Track Proceedings (2015). http://arxiv.org/abs/1412.6980

  11. Liu, Q., Zhou, Z., Liu, F., Fang, X., Yu, Y., Wang, Y.: Multi-stream progressive up-sampling network for dense CT image reconstruction. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12266, pp. 518–528. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59725-2_50

    Chapter  Google Scholar 

  12. McCollough, C.H., et al.: Low-dose CT for the detection and classification of metastatic liver lesions: results of the 2016 low dose CT grand challenge. Med. Phys. 44(10), e339–e352 (2017)

    Article  Google Scholar 

  13. Pelt, D.M., Sethian, J.A.: A mixed-scale dense convolutional neural network for image analysis. Proc. Natl. Acad. Sci. 115(2), 254–259 (2018)

    Article  MathSciNet  Google Scholar 

  14. Peng, C., Lin, W.A., Liao, H., Chellappa, R., Zhou, S.K.: Saint: spatially aware interpolation network for medical slice synthesis. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 7750–7759 (2020)

    Google Scholar 

  15. Ravenel, J.G., Leue, W.M., Nietert, P.J., Miller, J.V., Taylor, K.K., Silvestri, G.A.: Pulmonary nodule volume: effects of reconstruction parameters on automated measurements-a phantom study. Radiology 247(2), 400–408 (2008)

    Article  Google Scholar 

  16. Simpson, A.L., et al.: A large annotated medical image dataset for the development and evaluation of segmentation algorithms. arXiv preprint arXiv:1902.09063 (2019)

  17. Tsukagoshi, S., Ota, T., Fujii, M., Kazama, M., Okumura, M., Johkoh, T.: Improvement of spatial resolution in the longitudinal direction for isotropic imaging in helical CT. Phys. Med. Biol. 52(3), 791 (2007)

    Article  Google Scholar 

  18. Xie, H., et al.: High through-plane resolution CT imaging with self-supervised deep learning. Phys. Med. Biol. 66(14), 145013 (2021)

    Article  Google Scholar 

  19. Yu, P., Zhang, H., Kang, H., Tang, W., Arnold, C.W., Zhang, R.: RPLHR-CT dataset and transformer baseline for volumetric super-resolution from CT scans. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2022. MICCAI 2022. Lecture Notes in Computer Science, vol. 13436, pp. 344–353. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-16446-0_33

  20. Zhao, C., Dewey, B.E., Pham, D.L., Calabresi, P.A., Reich, D.S., Prince, J.L.: Smore: a self-supervised anti-aliasing and super-resolution algorithm for MRI using deep learning. IEEE Trans. Med. Imaging 40(3), 805–817 (2020)

    Article  Google Scholar 

Download references

Acknowledgment

This research was financed by the European Union H2020-MSCA-ITN-2020 under grant agreement no. 956172 (xCTing).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jiayang Shi .

Editor information

Editors and Affiliations

1 Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (pdf 278 KB)

Rights and permissions

Reprints and permissions

Copyright information

© 2024 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Shi, J., Pelt, D.M., Batenburg, K.J. (2024). SR4ZCT: Self-supervised Through-Plane Resolution Enhancement for CT Images with Arbitrary Resolution and Overlap. In: Cao, X., Xu, X., Rekik, I., Cui, Z., Ouyang, X. (eds) Machine Learning in Medical Imaging. MLMI 2023. Lecture Notes in Computer Science, vol 14348. Springer, Cham. https://doi.org/10.1007/978-3-031-45673-2_6

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-45673-2_6

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-45672-5

  • Online ISBN: 978-3-031-45673-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics