Generating High-Resolution 3D CT with 12-Bit Depth Using a Diffusion Model with Adjacent Slice and Intensity Calibration Network | SpringerLink
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Generating High-Resolution 3D CT with 12-Bit Depth Using a Diffusion Model with Adjacent Slice and Intensity Calibration Network

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Medical Image Computing and Computer Assisted Intervention – MICCAI 2023 (MICCAI 2023)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 14229))

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Abstract

Since the advent of generative models, deep learning-based methods for generating high-resolution, photorealistic 2D images have made significant successes. However, it is still difficult to create precise 3D image data with 12-bit depth used in clinical settings that capture the anatomy and pathology of CT and MRI scans. Using a score-based diffusion model, we propose a slice-based method that generates 3D images from previous 2D CT slices along the inferior direction. We call this method stochastic differential equations with adjacent slice-based conditional iterative inpainting (ASCII). We also propose an intensity calibration network (IC-Net) that adjusts the among slices intensity mismatch caused by 12-bit depth image generation. As a result, Frechet Inception Distance (FIDs) scores of FID-Ax, FID-Cor and FID-Sag of ASCII(2) with IC-Net were 14.993, 19.188 and 19.698, respectively. Anatomical continuity of the generated 3D image along the inferior direction was evaluated by an expert radiologist with more than 15 years of experience. In the analysis of eight anatomical structures, our method was evaluated to be continuous for seven of the structures.

J. Jeong and K. D. Kim—Contributed equally.

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References

  1. Gerard, S.E., et al.: CT image segmentation for inflamed and fibrotic lungs using a multi-resolution convolutional neural network. Sci. Rep. 11(1), 1–12 (2021)

    Article  Google Scholar 

  2. Lassau, N., et al.: Integrating deep learning CT-scan model, biological and clinical variables to predict severity of COVID-19 patients. Nat. Commun. 12(1), 1–11 (2021)

    Article  Google Scholar 

  3. Frid-Adar, M., et al.: GAN-based synthetic medical image augmentation for increased CNN performance in liver lesion classification. Neurocomputing 321, 321–331 (2018)

    Article  Google Scholar 

  4. Bowles, C., et al.: Gan augmentation: augmenting training data using generative adversarial networks. arXiv preprint arXiv:1810.10863 (2018)

  5. Hong, S., et al.: 3d-stylegan: a style-based generative adversarial network for generative modeling of three-dimensional medical images. In: Deep Generative Models, and Data Augmentation, Labelling, and Imperfections, pp. 24–34. Springer (2021)

    Chapter  Google Scholar 

  6. Ho, J., Jain, A., Abbeel, P.: Denoising diffusion probabilistic models. Adv. Neural. Inf. Process. Syst. 33, 6840–6851 (2020)

    Google Scholar 

  7. Song, Y., Ermon, S.: Generative modeling by estimating gradients of the data distribution. Adv. Neural Inform. Process. Syst. 32 (2019)

    Google Scholar 

  8. Song, Y., et al.: Score-based generative modeling through stochastic differential equations. arXiv preprint arXiv:2011.13456 (2020)

  9. Song, Y., Ermon, S.: Improved techniques for training score-based generative models. Adv. Neural. Inf. Process. Syst. 33, 12438–12448 (2020)

    Google Scholar 

  10. Meng, C., et al.: Sdedit: Image synthesis and editing with stochastic differential equations. arXiv preprint arXiv:2108.01073 (2021)

  11. Nichol, A.Q., Dhariwal, P.: Improved denoising diffusion probabilistic models. In: International Conference on Machine Learning. PMLR (2021)

    Google Scholar 

  12. Hyvärinen, A., Dayan, P.: Estimation of non-normalized statistical models by score matching. J. Mach. Learn. Res. 6(4) (2005)

    Google Scholar 

  13. Saharia, C., et al.: Image super-resolution via iterative refinement. arXiv preprint arXiv:2104.07636 (2021)

  14. Kong, Z., et al.: Diffwave: a versatile diffusion model for audio synthesis. arXiv preprint arXiv:2009.09761 (2020)

  15. Chen, N., et al.: WaveGrad: estimating gradients for waveform generation. arXiv preprint arXiv:2009.00713 (2020)

  16. Luo, S., Hu, W.: Diffusion probabilistic models for 3d point cloud generation. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (2021)

    Google Scholar 

  17. Mittal, G., et al.: Symbolic music generation with diffusion models. arXiv preprint arXiv:2103.16091 (2021)

  18. Goodfellow, I., et al.: Generative adversarial nets. Adv. Neural Inform. Process. Syst. 27 (2014)

    Google Scholar 

  19. Kingma, D.P., Welling, M.: Auto-encoding variational bayes. arXiv preprint arXiv:1312.6114 (2013)

  20. Karras, T., et al.: Analyzing and improving the image quality of stylegan. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (2020)

    Google Scholar 

  21. Karras, T., et al.: Training generative adversarial networks with limited data. Adv. Neural. Inf. Process. Syst. 33, 12104–12114 (2020)

    Google Scholar 

  22. Karras, T., et al.: Alias-free generative adversarial networks. Adv. Neural. Inf. Process. Syst. 34, 852–863 (2021)

    Google Scholar 

  23. Brunel, N., Hansel, D.: How noise affects the synchronization properties of recurrent networks of inhibitory neurons. Neural Comput. 18(5), 1066–1110 (2006)

    Article  MathSciNet  MATH  Google Scholar 

  24. Park, N., Kim, S.: How Do Vision Transformers Work? arXiv preprint arXiv:2202.06709 (2022)

  25. Volokitin, A., Erdil, Ertunc, Karani, Neerav, Tezcan, Kerem Can, Chen, Xiaoran, Van Gool, Luc, Konukoglu, Ender: Modelling the distribution of 3D brain MRI using a 2D slice VAE. In: Martel, A.L., Abolmaesumi, Purang, Stoyanov, Danail, Mateus, Diana, Zuluaga, Maria A., Kevin Zhou, S., Racoceanu, Daniel, Joskowicz, Leo (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part VII, pp. 657–666. Springer International Publishing, Cham (2020). https://doi.org/10.1007/978-3-030-59728-3_64

    Chapter  Google Scholar 

  26. Schlegl, T., et al.: f-AnoGAN: Fast unsupervised anomaly detection with generative adversarial networks. Med. Image Anal. 54, 30–44 (2019)

    Article  Google Scholar 

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Correspondence to Namkug Kim .

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Jeong, J. et al. (2023). Generating High-Resolution 3D CT with 12-Bit Depth Using a Diffusion Model with Adjacent Slice and Intensity Calibration Network. In: Greenspan, H., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2023. MICCAI 2023. Lecture Notes in Computer Science, vol 14229. Springer, Cham. https://doi.org/10.1007/978-3-031-43999-5_35

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  • DOI: https://doi.org/10.1007/978-3-031-43999-5_35

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