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Robust Evaluation of Language–Brain Encoding Experiments

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Computational Linguistics and Intelligent Text Processing (CICLing 2019)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 13451))

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Abstract

Language–brain encoding experiments evaluate the ability of language models to predict brain responses elicited by language stimuli. The evaluation scenarios for this task have not yet been standardized which makes it difficult to compare and interpret results. We perform a series of evaluation experiments with a consistent encoding setup and compute the results for multiple fMRI datasets. In addition, we test the sensitivity of the evaluation measures to randomized data and analyze the effect of voxel selection methods. Our experimental framework is publicly available to make modelling decisions more transparent and support reproducibility for future comparisons.

The experiments were conducted in 2018 when all three authors were employed at the Institute of Logic, Language and Computation at the University of Amsterdam. The paper was presented in 2019. Since then, language modeling has progressed immensely. Experimental standards for robust, comparable, and reproducible evaluation for interpreting language–brain encoding experiments with respect to reasonable random permutation baselines need to be further developed and more widely adopted.

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Notes

  1. 1.

    The code is available at https://github.com/beinborn/brain-lang.

  2. 2.

    Whether a linear model is a plausible choice is debatable. We use it here for comparison with previous work.

  3. 3.

    https://github.com/allenai/allennlp/blob/master/tutorials/how_to/elmo.md.

References

  1. Abnar, S., Ahmed, R., Mijnheer, M., Zuidema, W.: Experiential, distributional and dependency-based word embeddings have complementary roles in decoding brain activity. In: Proceedings of the 8th Workshop on Cognitive Modeling and Computational Linguistics (CMCL’18), pp. 57–66. Association for Computational Linguistics (2018). http://aclweb.org/anthology/W18-0107

  2. Aggarwal, C.C., Hinneburg, A., Keim, D.A.: On the surprising behavior of distance metrics in high dimensional space. In: Van den Bussche, J., Vianu, V. (eds.) Database Theory – ICDT 2001, pp. 420–434. Springer, Berlin Heidelberg, Berlin, Heidelberg (2001). http://kops.uni-konstanz.de/bitstream/handle/123456789/5715/On_the_Surprising_Behavior_of_Distance_Metric_in_High_Dimensional_Space.pdf?sequence=1

  3. Anderson, A.J., Bruni, E., Bordignon, U., Poesio, M., Baroni, M.: Of words, eyes and brains: Correlating image-based distributional semantic models with neural representations of concepts. In: Proceedings of the 2013 Conference on Empirical Methods in Natural Language Processing, pp. 1960–1970. Association for Computational Linguistics (2013). http://aclweb.org/anthology/D13-1202

  4. Anderson, A.J., Kiela, D., Clark, S., Poesio, M.: Visually grounded and textual semantic models differentially decode brain activity associated with concrete and abstract nouns. Trans. Assoc. Comput. Linguist. 5, 17–30 (2017). http://aclweb.org/anthology/Q17-1002

  5. Artstein, R., Poesio, M.: Inter-coder agreement for computational linguistics. Comput. Linguist. 34(4), 555–596 (2008). https://www.mitpressjournals.org/doi/pdfplus/10.1162/coli.07-034-R2

  6. Athanasiou, N., Iosif, E., Potamianos, A.: Neural activation semantic models: computational lexical semantic models of localized neural activations. In: Proceedings of the 27th International Conference on Computational Linguistics, pp. 2867–2878 (2018). http://www.aclweb.org/anthology/C18-1243

  7. Barrett, M., Bingel, J., Hollenstein, N., Rei, M., Søgaard, A.: Sequence classification with human attention. In: Proceedings of the 22nd Conference on Computational Natural Language Learning, pp. 302–312 (2018). http://www.aclweb.org/anthology/K18-1030

  8. Beinborn, L., Zesch, T., Gurevych, I.: Predicting the difficulty of language proficiency tests. Trans. Assoc. Comput. Linguist. 2(1), 517–529 (2014). http://www.aclweb.org/anthology/Q14-1040

  9. Bingel, J., Barrett, M., Søgaard, A.: Extracting token-level signals of syntactic processing from fMRI - with an application to pos induction. In: Proceedings of the 54th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 1, pp. 747–755 (2016). http://www.aclweb.org/anthology/P16-1071

  10. Brennan, J.R., Stabler, E.P., Van Wagenen, S.E., Luh, W.M., Hale, J.T.: Abstract linguistic structure correlates with temporal activity during naturalistic comprehension. Brain Lang. 157, 81–94 (2016). https://www.sciencedirect.com/science/article/pii/S0093934X1530068

  11. Bulat, L., Clark, S., Shutova, E.: Speaking, seeing, understanding: correlating semantic models with conceptual representation in the brain. In: Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, pp. 1081–1091. Association for Computational Linguistics (2017). http://aclweb.org/anthology/D17-1113

  12. Carroll, L.: Alice’s Adventures in Wonderland. Macmillan, London (1865)

    Google Scholar 

  13. Dehghani, M., et al.: Decoding the neural representation of story meanings across languages. Human Brain Mapp. 38(12), 6096–6106 (2017). https://www.ncbi.nlm.nih.gov/pubmed/28940969

  14. Frank, S.L., Otten, L.J., Galli, G., Vigliocco, G.: Word surprisal predicts n400 amplitude during reading. In: Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics (Volume 2: Short Papers), 2, pp. 878–883 (2013). https://www.semanticscholar.org/paper/Word-surprisal-predicts-N400-amplitude-during-Frank-Otten/0998e0763328764935e74db7c124ee4ee277c360

  15. Fyshe, A., Sudre, G., Wehbe, L., Rafidi, N., Mitchell, T.M.: The semantics of adjective noun phrases in the human brain. bioRxiv (2016). https://www.biorxiv.org/content/biorxiv/early/2016/11/25/089615.full.pdf

  16. Fyshe, A., Talukdar, P.P., Murphy, B., Mitchell, T.M.: Interpretable semantic vectors from a joint model of brain-and text-based meaning. In: Proceedings of the Conference. Association for Computational Linguistics. Meeting, vol. 2014, p. 489. NIH Public Access (2014). http://aclweb.org/anthology/P14-1046

  17. Gauthier, J., Ivanova, A.: Does the brain represent words? An evaluation of brain decoding studies of language understanding. arXiv:1806.00591 (2018). https://arxiv.org/pdf/1806.00591.pdf

  18. Hale, J., Dyer, C., Kuncoro, A., Brennan, J.R.: Finding syntax in human encephalography with beam search. In: Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics, Volume 1 (Long Papers), pp. 2727–2736. Association for Computational Linguistics (2018). http://aclweb.org/anthology/P18-1254

  19. Jain, S., Huth, A.: Incorporating context into language encoding models for fMRI. bioRxiv (2018). https://www.biorxiv.org/content/early/2018/05/21/327601

  20. Kriegeskorte, N., Goebel, R., Bandettini, P.: Information-based functional brain mapping. Proc. National Acad. Sci. 103(10), 3863–3868 (2006). http://www.pnas.org/content/103/10/3863.full

  21. Kriegeskorte, N., Mur, M., Bandettini, P.A.: Representational similarity analysis-connecting the branches of systems neuroscience. Front. Syst. Neurosci. vol. 2, p. 4 (2008). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2605405/

  22. Li, J., Fabre, M., Luh, W.M., Hale, J.: The role of syntax during pronoun resolution: evidence from fMRI. In: Proceedings of the 8th Workshop on Cognitive Aspects of Computational Language Learning and Processing, pp. 56–64. Association for Computational Linguistics (2018). http://aclweb.org/anthology/W18-2808

  23. Miezin, F.M., Maccotta, L., Ollinger, J., Petersen, S., Buckner, R.: Characterizing the hemodynamic response: effects of presentation rate, sampling procedure, and the possibility of ordering brain activity based on relative timing. Neuroimage 11(6), 735–759 (2000). https://doi.org/10.1006/nimg.2000.0568

    Article  Google Scholar 

  24. Mitchell, T.M., et al.: Predicting human brain activity associated with the meanings of nouns. science 320(5880), 1191–1195 (2008). https://www.cs.cmu.edu/tom/pubs/science2008.pdf

  25. Monsalve, I.F., Frank, S.L., Vigliocco, G.: Lexical surprisal as a general predictor of reading time. In: Proceedings of the 13th Conference of the European Chapter of the Association for Computational Linguistics, pp. 398–408. Association for Computational Linguistics (2012). https://aclanthology.info/pdf/E/E12/E12-1041.pdf

  26. Pedregosa, F., et al.: Scikit-learn: machine learning in Python. J. Mach. Learn. Res. 12, 2825–2830 (2011). http://www.jmlr.org/papers/volume12/pedregosa11a/pedregosa11a.pdf

  27. Pereira, F., et al.: Toward a universal decoder of linguistic meaning from brain activation. Nat. Commun. 9(1), 1–13 (2018). https://doi.org/10.1038/s41467-018-03068-4

    Article  Google Scholar 

  28. Peters, M., et al.: Deep contextualized word representations. In: Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long Papers), 1, pp. 2227–2237 (2018). http://www.aclweb.org/anthology/N18-1202

  29. Resnik, P., Lin, J.: Evaluation of NLP systems. The Handbook of Computational Linguistics and Natural Language Processing, vol. 57, pp. 271–295 (2010). https://pdfs.semanticscholar.org/41ef/e3fb47032d609bbb13b7c850bb8b1dbd544d.pdf

  30. Rowling, J.K.: Harry Potter and the Sorcerer’s Stone. Levine Books, Arthur A (1998)

    Google Scholar 

  31. Sudre, G., et al.: Tracking neural coding of perceptual and semantic features of concrete nouns. NeuroImage 62(1), 451–463 (2012). https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4465409/

  32. Wehbe, L., Murphy, B., Talukdar, P., Fyshe, A., Ramdas, A., Mitchell, T.: Simultaneously uncovering the patterns of brain regions involved in different story reading subprocesses. PLoS One 9(11), e112575 (2014). https://doi.org/10.1371/journal.pone.0112575

    Article  Google Scholar 

  33. Wehbe, L., Vaswani, A., Knight, K., Mitchell, T.: Aligning context-based statistical models of language with brain activity during reading. In: Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing (EMNLP). Association for Computational Linguistics (2014). https://doi.org/10.3115/v1/d14-1030

  34. Xu, H., Murphy, B., Fyshe, A.: Brainbench: a brain-image test suite for distributional semantic models. In: Proceedings of the 2016 Conference on Empirical Methods in Natural Language Processing, pp. 2017–2021 (2016). http://www.aclweb.org/anthology/D16-1213

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Acknowledgements

The work presented here was funded by the Netherlands Organisation for Scientific Research (NWO), through a Gravitation Grant 024.001.006 to the Language in Interaction Consortium.

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Correspondence to Lisa Beinborn .

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Appendix

Appendix

Table 6. Voxel-wise results for cross-validation when taking the sum over voxels. The results are averaged over all folds and all subjects. The results for the random language model are given in parentheses. The results in this table are hard to interpret. We discourage the use of the sum method as accumulation method.

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Beinborn, L., Abnar, S., Choenni, R. (2023). Robust Evaluation of Language–Brain Encoding Experiments. In: Gelbukh, A. (eds) Computational Linguistics and Intelligent Text Processing. CICLing 2019. Lecture Notes in Computer Science, vol 13451. Springer, Cham. https://doi.org/10.1007/978-3-031-24337-0_4

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