Microbial community analysis in rice paddy soils irrigated by acid mine drainage contaminated water
- PMID: 25408313
- DOI: 10.1007/s00253-014-6194-5
Microbial community analysis in rice paddy soils irrigated by acid mine drainage contaminated water
Abstract
Five rice paddy soils located in southwest China were selected for geochemical and microbial community analysis. These rice fields were irrigated with river water which was contaminated by Fe-S-rich acid mine drainage. Microbial communities were characterized by high-throughput sequencing, which showed 39 different phyla/groups in these samples. Among these phyla/groups, Proteobacteria was the most abundant phylum in all samples. Chloroflexi, Acidobacteria, Nitrospirae, and Bacteroidetes exhibited higher relative abundances than other phyla. A number of rare and candidate phyla were also detected. Moreover, canonical correspondence analysis suggested that pH, sulfate, and nitrate were significant factors that shaped the microbial community structure. In addition, a wide diversity of Fe- and S-related bacteria, such as GOUTA19, Shewanella, Geobacter, Desulfobacca, Thiobacillus, Desulfobacterium, and Anaeromyxobacter, might be responsible for biogeochemical Fe and S cycles in the tested rice paddy soils. Among the dominant genera, GOUTA19 and Shewanella were seldom detected in rice paddy soils.
Similar articles
-
Distribution and diversity of bacterial communities and sulphate-reducing bacteria in a paddy soil irrigated with acid mine drainage.J Appl Microbiol. 2016 Jul;121(1):196-206. doi: 10.1111/jam.13143. Epub 2016 May 21. J Appl Microbiol. 2016. PMID: 27005987
-
Dynamic Change in Enzyme Activity and Bacterial Community with long-term rice Cultivation in Mudflats.Curr Microbiol. 2019 Mar;76(3):361-369. doi: 10.1007/s00284-019-01636-5. Epub 2019 Jan 25. Curr Microbiol. 2019. PMID: 30684025
-
Bacterial, archaeal, and fungal community responses to acid mine drainage-laden pollution in a rice paddy soil ecosystem.Sci Total Environ. 2018 Mar;616-617:107-116. doi: 10.1016/j.scitotenv.2017.10.224. Epub 2017 Nov 4. Sci Total Environ. 2018. PMID: 29107775
-
Microbial communities inhabiting oil-contaminated soils from two major oilfields in Northern China: Implications for active petroleum-degrading capacity.J Microbiol. 2015 Jun;53(6):371-8. doi: 10.1007/s12275-015-5023-6. Epub 2015 May 30. J Microbiol. 2015. PMID: 26025169
-
Characterization of iron-metabolizing communities in soils contaminated by acid mine drainage from an abandoned coal mine in Southwest China.Environ Sci Pollut Res Int. 2019 Apr;26(10):9585-9598. doi: 10.1007/s11356-019-04336-6. Epub 2019 Feb 6. Environ Sci Pollut Res Int. 2019. PMID: 30726542
Cited by
-
Effect of Low-Input Organic and Conventional Farming Systems on Maize Rhizosphere in Two Portuguese Open-Pollinated Varieties (OPV), "Pigarro" (Improved Landrace) and "SinPre" (a Composite Cross Population).Front Microbiol. 2021 Feb 26;12:636009. doi: 10.3389/fmicb.2021.636009. eCollection 2021. Front Microbiol. 2021. PMID: 33717028 Free PMC article.
-
Microbial Community Structure and Metabolic Potential at the Initial Stage of Soil Development of the Glacial Forefields in Svalbard.Microb Ecol. 2023 Aug;86(2):933-946. doi: 10.1007/s00248-022-02116-3. Epub 2022 Oct 14. Microb Ecol. 2023. PMID: 36239777
-
Unveiling Endophytic Bacterial Community Structures of Different Rice Cultivars Grown in a Cadmium-Contaminated Paddy Field.Front Microbiol. 2021 Nov 16;12:756327. doi: 10.3389/fmicb.2021.756327. eCollection 2021. Front Microbiol. 2021. PMID: 34867879 Free PMC article.
-
Effects of Zinc Pollution and Compost Amendment on the Root Microbiome of a Metal Tolerant Poplar Clone.Front Microbiol. 2020 Jul 15;11:1677. doi: 10.3389/fmicb.2020.01677. eCollection 2020. Front Microbiol. 2020. PMID: 32760392 Free PMC article.
-
The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome.Microbiome. 2019 Feb 1;7(1):14. doi: 10.1186/s40168-019-0629-2. Microbiome. 2019. PMID: 30709420 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
