Computer Science > Computation and Language
[Submitted on 2 Aug 2024 (v1), last revised 14 Aug 2024 (this version, v2)]
Title:BioRAG: A RAG-LLM Framework for Biological Question Reasoning
View PDF HTML (experimental)Abstract:The question-answering system for Life science research, which is characterized by the rapid pace of discovery, evolving insights, and complex interactions among knowledge entities, presents unique challenges in maintaining a comprehensive knowledge warehouse and accurate information retrieval. To address these issues, we introduce BioRAG, a novel Retrieval-Augmented Generation (RAG) with the Large Language Models (LLMs) framework. Our approach starts with parsing, indexing, and segmenting an extensive collection of 22 million scientific papers as the basic knowledge, followed by training a specialized embedding model tailored to this domain. Additionally, we enhance the vector retrieval process by incorporating a domain-specific knowledge hierarchy, which aids in modeling the intricate interrelationships among each query and context. For queries requiring the most current information, BioRAG deconstructs the question and employs an iterative retrieval process incorporated with the search engine for step-by-step reasoning. Rigorous experiments have demonstrated that our model outperforms fine-tuned LLM, LLM with search engines, and other scientific RAG frameworks across multiple life science question-answering tasks.
Submission history
From: Qingqing Long [view email][v1] Fri, 2 Aug 2024 08:37:03 UTC (5,342 KB)
[v2] Wed, 14 Aug 2024 09:54:24 UTC (5,336 KB)
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