Abstract
This article assumes a specific intuitive notion of complexity as a difficulty to generate and/or assess the plausibility of models. Based on this intuitive understanding of complexity, it identifies two main causes of complexity, namely, radical openness and contextuality. The former is the idea that there are no natural systems. The modeler always needs to draw artificial boundaries around phenomena to generate feasible models. Contextuality is intimately connected to the requirement to simplify models and to leave out most aspects. Complexity occurs when contextuality and radical openness cannot be contained that is when it is not clear where the boundaries of the system are and which abstractions are the correct ones. This concept of complexity is illustrated using a number of example from evolution.
Similar content being viewed by others
Notes
The issue is not always quite as clear-cut. Particularly when it comes to large-scale computational models there can be significant problems to create a consensus on the properties of the model when it is run on different platforms, or even differently configured versions of the same platform. These problems certainly do exists, are interesting and indeed important to consider and are also relevant for complexity. However, as far as the following discussion is concerned, they are an unnecessary complication in that they do not interfere with the conclusion we will reach. We will therefore assume the simplest case that formal models are unproblematic.
The various interpretations of Quantum Mechanics are an example of disagreements on the semantic models while there is an agreement on the syntactic models.
It has to be pointed out that complexity is not Rosen’s primary interest, which is directed towards organizational principles of living systems. Complexity is more an accidental fallout rather than the main focus of his investigations. Hence he formulates complexity, rather specifically, in terms of abstract models of metabolic systems.
This is not to be confused with the memory space the simulated objects take in th physical computer on which Tierra is implemented. This memory space, while practically of importance is of no consequence for the behavior of the model.
References
Adami C (1998) Introduction to artificial life. Springer, New York
Ahl V, Allen T (1996) Hierarchy theory: a vision, vocabulary and epistemology. Columbia University Press, New York
Bak P (1997) How nature works. Oxford University Press, Oxford
Bedau M, Smith R (1999) Is echo a complex adaptive system?. Evol Comput 7(1):45–68
Bedau M, Snyder E., Brown T., Packard N. (1997) A comparison of evolutionary activity and artificial evolving systems in the biosphere. In: Husbands P, Harvey I (eds) In: Proceedings of the fourth European conference on artificial life.
Bennett C (1986) On the nature and origin of complexity in discrete, homogeneous, locally-interacting systems. Found Physics 16(6):585–592
Buckling A, Harrison F, Vos M, Brockhurst M, Gardner A, West S, Griffin A (2007) Siderophore-mediated cooperation and virulence in Pseudomonas aeruginosa. FEMS Microbiol Ecol 62(2):135–141
Chu D, Ho W (2006) A category theoretical argument against the possibility of artificial life. Artif Life 12(4):117–135
Chu D, Ho W (2007) Computational realizations of living systems. Artif Life 13(4):369–381
Chu D, Ho W (2007) The localization hypothesis and machines. Artifi Life 13(3):299–302
Chu D, Strand R, Fjelland R (2003) Theories of complexity. Complexity 8(3):19–30
Chu D, Lee H, Lenaerts T (2005) Evolution of DNA uptake signal sequences. Artifi Life 11(3):317–338
Chu D, Zabet N, Mitavskiy B (2009) Models of transcription factor binding: sensitivity of activation functions to model assumptions. J Theor Biol 257(3):419–429
Edmonds B (1999) Syntactic measures of complexity. Ph.D. thesis, University of Manchester. http://www.cpm.mmu.ac.uk/∼bruce/thesis
Eigen M, Schuster P (1979) The hypercycle: a principle of natural self-organization. Springer, Berlin, HeidelBerg and New York
Stanley HS et.al (1996a) Scaling and universality in animate and inanimate systems. Physica A 231: 20–48
Stanley HS et.al (1996b) Scaling and universality in living systems. Fractals 4: 427–451
Fletcher J, Zwick M (2007) The evolution of altruism: game theory in multilevel selection and inclusive fitness. J Theor Biol 245(1):26–36
Griffin A, West S, Buckling A (2004) Cooperation and competition in pathogenic bacteria. Nature 430(7003):1024–1027
Gross D. Lenaerts T (2003) Towards a definition of dynamical hierarchies. In: Bilotta E, Smith DGT, Lenaerts T, Bullock S, Lund H, Bird J, Watson R, Pantano P, Pagliarini L, Abbass H, Standish R, Bedau M (eds) Workshop proceedings of the eighth international conference on artificial life. University of New South Wales Press, pp. 45–55
Gross D, Strand R (2000) Can agent-based models assist decisions on large-scale practical problems? A philosophical analysis. Complexity 5(5):26–33
Hase K, Yamazak N (2007) Computational evolution of human bipedal walking by a neuro-musculo-skeletal model. Artif Life Robot 3(3):133–138
Hoffmeyer J (2009) Biosemiotics: an examination into the signs of life and the life of signs. University of Chicago Press, Chicago
Holland J (1995) Hidden order. Addison-Weseley, Reading
Holland J (1998) Emergence. Oxford University Press, Oxford
Langton C (ed.) (1989) Artificial life—an overview. MIT Press, Cambridge
Letelier J, Marin G, Mpodozis J (2004) Autopoietic and (M,R) systems. J Theor Biol 222:261–272
Letelier J, Soto-Andrade J, Abarzua FG, Cornish-Bowden A, Cardenas M (2006) Organizational invariance and metabolic closure: analysis in terms of (M,R) systems. J Theor Biol 238:949–961
McMullin B, Varela F (1997) Rediscovering computational autopoiesis’. In: Husbands P, Harvey I (eds) Proceedings of the fourth European conference on artificial life. MIT Press, Cambridge, http://www.eeng.dcu.ie/˜alife/bmcm-ecal97/
McShea D (1996) Metazoan complexity and evolution: is there a trend?. Evolution 50:477–492
Mitchell M (1997) An introduction to genetic algorithms. A Bradford Book. 3rd edn. MIT Press, Cambridge, pp 378–387
Noble D (2009) The music of life. Oxford University Press, Oxford
Pickering A (1995) The mangle of practice. The University of Chicago Press, Chicago
Ray T (1996) An approach to the syntheses of life, Oxford Readings in Philosophy. Oxford University Press, Oxford, pp 111–145
Rescher N (1998) Complexity—a philosophical overview. Transaction, New Brunswick, p 219
Rosen R (1991) Life Itself. Columbia University Press, New York
Rosen R (1999) Essays on life itself. Columbia University Press, New York
Salthe S (1985) Evolving hierarchical systems. Columbia University Press, New York
Santos FC, Pacheco JM, Lenaerts T (2006) Evolutionary dynamics of social dilemmas in structured heterogeneous populations. Proc Natl Acad Sci USA 103(9): 3490–3494
Slutsky M, Kardar M, Mirny L (2004) Diffusion in correlated random potentials, with applications to DNA. Phys Rev E 69(6):061903
Sneppen K, Zochhi G (2005) Physics in molecular biology. Canbridge University Press, Cambridge
Traulsen A, Nowak M (2006) Evolution of cooperation by multilevel selection. Proc Natl Acad Sci USA 103(29): 10952–10955
West S, Diggle S, Buckling A, Gardner A, Griffin A (2007) The Social lives of microbes. Annu Rev Ecol Evol System 38:53–77
Wild G, Gardner A, SA West (2009) Adaptation and the evolution of parasite virulence in a connected world. Nature 459(7249):983–986
Wolkenhauer O (2002) Systems biology: the reincarnation of systems theory applied to biology?. Brief Bioinform 2(3):258–270
Wolkenhauer O, Hofmeyr J (2007) An abstract cell model that describes the self-organization of cell function in living systems. J Theor Biol 246(3):461–476
Worden L, Levin S (2007) Evolutionary escape from the prisoner’s dilemma. J Theor Biol 245(3):411–422
Wunderlich Z, Mirny L (2008) Spatial effects on the speed and reliability of protein-DNA search. Nucleic Acids Res 36(11):3570–3578
Wynne B (2005) Reflexing complexity: post-genomic knowledge and reductionist returns in public science. Theory CultureSoc 22(5):133–138
Acknowledgments
The research for this article was partially funded by the Norwegian Research Council. The author gratefully acknowledges the hospitality of the Senter for Vitskapsteori at the University of Bergen (Norway) where parts of this manuscript were conceived and drafted.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Chu, D. Complexity: against systems. Theory Biosci. 130, 229–245 (2011). https://doi.org/10.1007/s12064-011-0121-4
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s12064-011-0121-4