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Spatial knowledge representation for visualization of human anatomy and function

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Information Processing in Medical Imaging (IPMI 1993)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 687))

Abstract

Computerized presentation of knowledge about human gross anatomy and function is presently being developed along two major tracks. Computer graphics on one hand provides more and more powerful tools for volume visualization. Knowledge engineering on the other hand provides more and more sophisticated data structures, while it does not care much for proper visualization of such knowledge. This paper presents a new approach of representing medical knowledge with a volume based data structure. This method has major advantages for true three-dimensional visualization of anatomical and functional knowledge, as well as for presenting knowledge of different domains simultaneously. The basic ideas and a pilot implementation for the human skull and brain are presented. Remaining problems and possibilities for future extensions and improvements are discussed.

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References

  1. Anonymous: Electronic Imaging. US Dept. of Health and Human Services, National Institute of Health, 1990.

    Google Scholar 

  2. F. E. Bloom: Databases of Brain Information. In A. W. Toga (Ed.): Three-Dimensional Neuroimaging, Raven Press, Ltd., New York, 1990, 273–306.

    Google Scholar 

  3. M. Bomans, K. H. Höhne, U. Tiede, M. Riemer: 3D-Segmentation of MR-Images of the Head for 3D-Display. IEEE Trans. Med. Imaging MI-9, 2 (1990), 177–183.

    Article  Google Scholar 

  4. J. F. Brinkley, J. S. Prothero, J. W. Prothero, e. a.: A framework for the design of knowledge systems in structural biology. In Proc. SCAMC. Washington, 1989, 61–65.

    Google Scholar 

  5. I. C. Carlsen, M. Imme, M. H. Kuhn, W. Menhardt, K. Ottenberg, K. H. Schmidt: Knowledge Based Interpretation of Cranial MR Images. In H. U. Lemke et al. (Eds.): Computer Assisted Radiology, Proc. CAR '91, Springer-Verlag, Berlin, 1991, 277–282.

    Google Scholar 

  6. P. Dev, G. P. Coppa, E. Tancred: BrainStorm: Designing an Interactive Neuroanatomy Atlas. Radiology 185 (P), (1992), 413. (abstract).

    Google Scholar 

  7. A. C. Evans, C. Beil, S. Marret, e. a.: Anatomical-functional correlation using an adjustable MRI-based region of interest atlas with positron emission tomography. J. Cereb. Blood Flow Metab. 8, 4 (1988), 513–530.

    PubMed  Google Scholar 

  8. T. Greitz, C. Bohm, S. Holte, L. Eriksson: A Computerized Brain Atlas: Construction, Anatomical Content, and Some Applications. J. Comput. Assist. Tomogr. 15, 1 (1991), 26–38.

    PubMed  Google Scholar 

  9. K. H. Höhne, R. Bernstein: Shading 3D-Images from CT Using Gray Level Gradients. IEEE Trans. Med. Imaging MI-5, 1 (1986), 45–47.

    Google Scholar 

  10. K. H. Höhne, M. Bomans, A. Pommert, M. Riemer, C. Schiers, U. Tiede, G. Wiebecke: 3D-Visualization of Tomographic Volume Data Using the Generalized Voxel-Model. The Visual Comput. 6, 1 (1990), 28–36.

    Article  Google Scholar 

  11. K. H. Höhne, M. Bomans, M. Riemer, R. Schubert, U. Tiede, W. Lierse: A 3D Anatomical Atlas Based on a Volume Model. IEEE Comput. Graphics Appl. 12, 4 (1992), 72–78.

    Article  Google Scholar 

  12. K. H. Höhne, W. A. Hanson: Interactive 3D-Segmentation of MRI and CT Volumes Using Morphological Operations. J. Comput. Assist. Tomogr. 16, 2 (1992), 285–294.

    PubMed  Google Scholar 

  13. K. H. Höhne, A. Pommert, M. Riemer, T. Schiemann, R. Schubert, U. Tiede, W. Lierse: Framework for the Generation of 3D Anatomical Atlasses. In R. A. Robb (Ed.): Visualization in Biomedical Computing II, Proc. SPIE 1808. Chapel Hill, NC, 1992, 510–520.

    Google Scholar 

  14. D. G. v. Keyserlingk, K. Niemann, J. Wasel, K. Maurer: Digital Brain Atlas for Structure Localization in CT Combined With EEG Mapping. Psychiatry Research 29, (1989), 461–462.

    Article  PubMed  Google Scholar 

  15. D. Lemoine, C. Barillot, B. Gibaud, E. Pasqualini: An Anatomical-based 3D Registration System of Multimodality and Atlas Data in Neurosurgery. In A. C. F. Colchester, D. J. Hawkes (Eds.): Information Processing in Medical Imaging, Proc. IPMI '91, Springer-Verlag, Berlin, 1991, 154–164.

    Google Scholar 

  16. K. Lipscomb, A. Kittrel: Software gets under your skin. Physicians and Computers 9, 7 (1991), 14–16.

    Google Scholar 

  17. I. Mano, Y. Suto, M. Suzuki, M. Iio: Computerized Three-Dimensional Normal Atlas. Radiat. Med. 8, 2 (1990), 50–54.

    PubMed  Google Scholar 

  18. K. Niemann, D. G. v. Keyserlingk, J. Wasel: Superimposition of an Averaged Three-Dimensional Pattern of Brain Structures on CT Scans. Acta Neurochir. 93, (1988), 61–67.

    Article  Google Scholar 

  19. J. Niggemann: A Conceptual View on Neuroanatomy. Bericht Nr. D-3-92 vom März 1992, Fraunhofer-Institut Biomedizinische Technik, St. Ingbert, 1992.

    Google Scholar 

  20. A. Pommert, W.-J. Höltje, N. Holzknecht, U. Tiede, K. H. Höhne: Accuracy of Images and Measurements in 3D Bone Imaging. In H. U. Lemke, et al. (Eds.): Computer Assisted Radiology, Proc. CAR '91, Springer-Verlag, Berlin, 1991, 209–215.

    Google Scholar 

  21. G. Schaltenbrand, W. Wahren: Atlas for stereotaxy of the human brain. Thieme, Stuttgart, 1977.

    Google Scholar 

  22. T. Schiemann, M. Bomans, U. Tiede, K. H. Höhne: Interactive 3D-Segmentation. In R. A. Robb (Ed.): Visualization in Biomedical Computing II, Proc. SPIE 1808. Chapel Hill, NC, 1992, 376–383.

    Google Scholar 

  23. R. Schubert, M. Bomans, K. H. Höhne, A. Pommert, T. Schiemann, U. Tiede, W. Lierse: A new Method for Representing the Human Anatomy. Comput. Med. Imaging Graph. (1993). to be published.

    Google Scholar 

  24. J. Talairach, P. Tournoux: Co-planar stereotaxic atlas of the human brain. Thieme, Stuttgart, New York, 1988.

    Google Scholar 

  25. U. Tiede, K. H. Höhne, M. Bomans, A. Pommert, M. Riemer, G. Wiebecke: Investigation of Medical 3D-Rendering Algorithms. IEEE Comput. Graphics Appl. 10, 2 (1990), 41–53.

    Article  Google Scholar 

  26. U. Tiede, M. Riemer, M. Bomans, K. H. Höhne: Display Techniques for 3D-Tomographic Volume Data. In Proc. NCGA '88, Vol. III. Anaheim, 1988, 188–197.

    Google Scholar 

  27. M. Wahler-Lück, T. Schütz, H.-J. Kretschmann: A new anatomical representation of the human visual pathways. Graefe's Arch. Clin. Exp. Ophthalmol. 229, (1991), 201–205.

    Article  Google Scholar 

  28. S. L. Wertheim: The Brain Database: a multimedia database for neuroscience research and teaching. In 13th Annual Symposium on Computer Applications in Medical Care, IEEE Computer Society Press, Los Alamitos, CA, 1989, 399–404.

    Google Scholar 

  29. H.-H. Zachmann: Interpretation of Cranial MR-Images using a Digital Atlas of the Human Head. In H. U. Lemke et al. (Eds.): Computer Assisted Radiology, Proc. CAR '91, Springer-Verlag, Berlin, 1991, 283–288.

    Google Scholar 

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Authors and Affiliations

  1. Institute of Mathematics and Computer Science in Medicine (IMDM), University Hospital Eppendorf, Martinistraße 52, 2000, Hamburg 20, Germany

    R. Schubert, K. H. Höhne, A. Pommert, M. Riemer, Th. Schiemann & U. Tiede

Authors
  1. R. Schubert
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  2. K. H. Höhne
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  3. A. Pommert
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  4. M. Riemer
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  5. Th. Schiemann
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  6. U. Tiede
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Editor information

Harrison H. Barrett A. F. Gmitro

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© 1993 Springer-Verlag Berlin Heidelberg

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Schubert, R., Höhne, K.H., Pommert, A., Riemer, M., Schiemann, T., Tiede, U. (1993). Spatial knowledge representation for visualization of human anatomy and function. In: Barrett, H.H., Gmitro, A.F. (eds) Information Processing in Medical Imaging. IPMI 1993. Lecture Notes in Computer Science, vol 687. Springer, Berlin, Heidelberg. https://doi.org/10.1007/BFb0013787

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  • DOI: https://doi.org/10.1007/BFb0013787

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  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-56800-1

  • Online ISBN: 978-3-540-47742-6

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