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A Full-Text Learning to Rank Dataset for Medical Information Retrieval

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Advances in Information Retrieval (ECIR 2016)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 9626))

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Abstract

We present a dataset for learning to rank in the medical domain, consisting of thousands of full-text queries that are linked to thousands of research articles. The queries are taken from health topics described in layman’s English on the non-commercial www.NutritionFacts.org website; relevance links are extracted at 3 levels from direct and indirect links of queries to research articles on PubMed. We demonstrate that ranking models trained on this dataset by far outperform standard bag-of-words retrieval models. The dataset can be downloaded from: www.cl.uni-heidelberg.de/statnlpgroup/nfcorpus/.

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Notes

  1. 1.

    www.ncbi.nlm.nih.gov/pubmed.

  2. 2.

    For example, the USPTO and EPO provide specialized patent search facilities at www.uspto.gov/patents/process/search and www.epo.org/searching.html.

  3. 3.

    www.research.microsoft.com/en-us/um/beijing/projects/letor, www.research. microsoft.com/en-us/projects/mslr, www.webscope.sandbox.yahoo.com.

  4. 4.

    www.clefehealth2014.dcu.ie/task-3.

  5. 5.

    www.cl.uni-heidelberg.de/statnlpgroup/boostclir/wikiclir.

  6. 6.

    BM25 parameters were set to \(k_1= 1.2\), \(b= 0.75\).

  7. 7.

    Preprocessing included lowercasing, tokenizing, filtering punctuation and stop-words, and replacing numbers with a special token.

References

  1. Bai, B., Weston, J., Grangier, D., Collobert, R., Sadamasa, K., Qi, Y., Chapelle, O., Weinberger, K.: Learning to rank with (a lot of) word features. Inf. Retr. J. 13(3), 291–314 (2010)

    Article  Google Scholar 

  2. Collins, M., Koo, T.: Discriminative reranking for natural language parsing. Comput. Linguist. 31(1), 25–69 (2005)

    Article  MathSciNet  MATH  Google Scholar 

  3. Goel, S., Langford, J., Strehl, A.L.: Predictive indexing for fast search. In: NIPS, Vancouver, Canada (2008)

    Google Scholar 

  4. Goeuriot, L., Kelly, L., Jones, G.J.F., Müller, H., Zobel, J.: Report on the SIGIR 2014 workshop on medical information retrieval (MedIR). SIGIR Forum 48(2), 78–82 (2014)

    Article  Google Scholar 

  5. Shi, Q., Petterson, J., Dror, G., Langford, J., Smola, A.J., Strehl, A.L., Vishwanathan, V.: Hash Kernels. In: AISTATS, Irvine, CA (2009)

    Google Scholar 

  6. Smucker, M.D., Allan, J., Carterette, B.: A comparison of statistical significance tests for information retrieval evaluation. In: CIKM, Lisbon, Portugal (2007)

    Google Scholar 

  7. Sokolov, A., Jehl, L., Hieber, F., Riezler, S.: Boosting cross-language retrieval by learning bilingual phrase associations from relevance rankings. In: EMNLP, Seattle (2013)

    Google Scholar 

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Acknowledgments

We are grateful to Dr. Michael Greger for permitting crawling www.NutritionFacts.org. This research was supported in part by DFG grant RI-2221/1-2 “Weakly Supervised Learning of Cross-Lingual Systems”.

Author information

Authors and Affiliations

  1. Computational Linguistics, Heidelberg University, Heidelberg, Germany

    Vera Boteva, Demian Gholipour, Artem Sokolov & Stefan Riezler

  2. IWR, Heidelberg University, Heidelberg, Germany

    Stefan Riezler

Authors
  1. Vera Boteva
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  2. Demian Gholipour
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  3. Artem Sokolov
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  4. Stefan Riezler
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Corresponding author

Correspondence to Artem Sokolov .

Editor information

Editors and Affiliations

  1. Department of Information Engineering, University of Padua, Padova, Italy

    Nicola Ferro

  2. Faculty of Informatics, University of Lugano (USI), Lugano, Switzerland

    Fabio Crestani

  3. Department of Computer Science, Katholieke Universiteit Leuven, Heverlee, Belgium

    Marie-Francine Moens

  4. Systèmes d’informations, Big Data et Recherche d’Information, Institut de Recherche en Informatique de Toulouse IRIT/équipe SIG, Toulouse Cedex 04, France

    Josiane Mothe

  5. Yahoo! Labs London, London, UK

    Fabrizio Silvestri

  6. Department of Information Engineering, University of Padua, Padova, Italy

    Giorgio Maria Di Nunzio

  7. TU Delft - EWI/ST/WIS, Delft, The Netherlands

    Claudia Hauff

  8. Department of Information Engineering, University of Padua, Padova, Italy

    Gianmaria Silvello

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© 2016 Springer International Publishing Switzerland

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Boteva, V., Gholipour, D., Sokolov, A., Riezler, S. (2016). A Full-Text Learning to Rank Dataset for Medical Information Retrieval. In: Ferro, N., et al. Advances in Information Retrieval. ECIR 2016. Lecture Notes in Computer Science(), vol 9626. Springer, Cham. https://doi.org/10.1007/978-3-319-30671-1_58

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  • DOI: https://doi.org/10.1007/978-3-319-30671-1_58

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-30670-4

  • Online ISBN: 978-3-319-30671-1

  • eBook Packages: Computer ScienceComputer Science (R0)

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