Continual Active Learning for Efficient Adaptation of Machine Learning Models to Changing Image Acquisition | SpringerLink
Skip to main content

Continual Active Learning for Efficient Adaptation of Machine Learning Models to Changing Image Acquisition

  • Conference paper
  • First Online:
Information Processing in Medical Imaging (IPMI 2021)

Abstract

Imaging in clinical routine is subject to changing scanner protocols, hardware, or policies in a typically heterogeneous set of acquisition hardware. Accuracy and reliability of deep learning models suffer from those changes as data and targets become inconsistent with their initial static training set. Continual learning can adapt to a continuous data stream of a changing imaging environment. Here, we propose a method for continual active learning on a data stream of medical images. It recognizes shifts or additions of new imaging sources - domains -, adapts training accordingly, and selects optimal examples for labelling. Model training has to cope with a limited labelling budget, resembling typical real world scenarios. We demonstrate our method on T1-weighted magnetic resonance images from three different scanners with the task of brain age estimation. Results demonstrate that the proposed method outperforms naive active learning while requiring less manual labelling.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
¥17,985 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
JPY 3498
Price includes VAT (Japan)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
JPY 12583
Price includes VAT (Japan)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
JPY 15729
Price includes VAT (Japan)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Notes

  1. 1.

    https://brain-development.org/ixi-dataset/.

  2. 2.

    https://github.com/nkdinsdale/Unlearning_for_MRI_harmonisation.

References

  1. Bobu, A., Tzeng, E., Hoffman, J., Darrell, T.: Adapting to continously shifting domains. In: ICLR Workshop (2018)

    Google Scholar 

  2. Budd, S., Robinson, E.C., Kainz, B.: A Survey on Active Learning and Human-in-the-Loop Deep Learning for Medical Image Analysis (2019)

    Google Scholar 

  3. Dinsdale, N.K., Jenkinson, M., Namburete, A.I.: Unlearning Scanner Bias for MRI Harmonisation in Medical Image Segmentation. Commun. Comput. Inf. Sci. CCIS 1248, 15–25 (2020)

    Google Scholar 

  4. Gatys, L., Ecker, A., Bethge, M.: A neural algorithm of artistic style. J. Vis. 16(12), 326 (2016)

    Article  Google Scholar 

  5. Gonzalez, C., Sakas, G., Mukhopadhyay, A.: What is Wrong with Continual Learning in Medical Image Segmentation? (2020). http://arxiv.org/abs/2010.11008

  6. Hofmanninger, J., Perkonigg, M., Brink, J.A., Pianykh, O., Herold, C., Langs, G.: Dynamic memory to alleviate catastrophic forgetting in continuous learning settings. In: Martel, A.L., et al. (eds.) MICCAI 2020. LNCS, vol. 12262, pp. 359–368. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59713-9_35

    Chapter  Google Scholar 

  7. LaMontagne, P.J., et al.: OASIS-3: Longitudinal Neuroimaging, Clinical, and Cognitive Dataset for Normal Aging and Alzheimer Disease. medRxiv p. 2019.12.13.19014902 (2019). https://doi.org/10.1101/2019.12.13.19014902

  8. Lao, Q., Jiang, X., Havaei, M., Bengio, Y.: Continuous Domain Adaptation with Variational Domain-Agnostic Feature Replay (2020)

    Google Scholar 

  9. Lenga, M., Schulz, H., Saalbach, A.: Continual Learning for Domain Adaptation in Chest X-ray Classification. In: Conference on Medical Imaging with Deep Learning (MIDL) (2020)

    Google Scholar 

  10. Li, P., Hastie, T.J., Church, K.W.: Very sparse stable random projections for dimension reduction. In: Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 440–449 (2007)

    Google Scholar 

  11. Li, Z., Hoiem, D.: Learning without forgetting. IEEE Trans. Pattern Anal. Mach. Intell. 40(12), 2935–2947 (2018)

    Google Scholar 

  12. Lopez-Paz, D., Ranzato, M.: Gradient episodic memory for continual learning. In: Advances in Neural Information Processing Systems, pp. 6468–6477 (2017)

    Google Scholar 

  13. Maaten, L.v.d., Hinton, G.: Visualizing data using t-SNE. J. Mach. Learn. Res. 9, 2579–2605 (2008)

    Google Scholar 

  14. McCloskey, M., Cohen, N.J.: Catastrophic interference in connectionist networks: the sequential learning problem. In: Psychology of Learning and Motivation - Advances in Research and Theory, vol. 24, pp. 109–165 (1989)

    Google Scholar 

  15. Ozdemir, F., Fuernstahl, P., Goksel, O.: Learn the new, keep the old: extending pretrained models with new anatomy and images. In: Frangi, A.F., Schnabel, J.A., Davatzikos, C., Alberola-López, C., Fichtinger, G. (eds.) MICCAI 2018. LNCS, vol. 11073, pp. 361–369. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00937-3_42

    Chapter  Google Scholar 

  16. Pianykh, O.S., et al.: Continuous learning AI in radiology: implementation principles and early applications. Radiology 297(1), 6–14 (2020)

    Article  Google Scholar 

  17. Tony Liu, F., Ming Ting, K., Zhou, Z.H.: Isolation Forest. In: International Conference on Data Mining (2008)

    Google Scholar 

  18. Venkataramani, R., Ravishankar, H., Anamandra, S.: Towards continuous domain adaptation for medical imaging. In: Proceedings - International Symposium on Biomedical Imaging, vol. 2019-April, pp. 443–446. IEEE Computer Society (4 2019)

    Google Scholar 

  19. Wu, Z., Wang, X., Gonzalez, J., Goldstein, T., Davis, L.: ACE: adapting to changing environments for semantic segmentation. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 2121–2130 (2019)

    Google Scholar 

  20. Zhou, Z., Sodha, V., Pang, J., Gotway, M.B., Liang, J.: Models Genesis. Medical Image Analysis p. 101840 (2020). https://doi.org/10.1016/j.media.2020.101840

Download references

Acknowledgments

This work was supported by Novartis Pharmaceuticals Corporation and received funding by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 765148.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Matthias Perkonigg .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Perkonigg, M., Hofmanninger, J., Langs, G. (2021). Continual Active Learning for Efficient Adaptation of Machine Learning Models to Changing Image Acquisition. In: Feragen, A., Sommer, S., Schnabel, J., Nielsen, M. (eds) Information Processing in Medical Imaging. IPMI 2021. Lecture Notes in Computer Science(), vol 12729. Springer, Cham. https://doi.org/10.1007/978-3-030-78191-0_50

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-78191-0_50

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-78190-3

  • Online ISBN: 978-3-030-78191-0

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics