Life Science Grid Middleware in a More Dynamic Environment | SpringerLink
Skip to main content
Springer Nature Link
Log in

Life Science Grid Middleware in a More Dynamic Environment

  • Conference paper
On the Move to Meaningful Internet Systems 2005: OTM 2005 Workshops (OTM 2005)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 3762))

  • 766 Accesses

Abstract

This paper proposes a model for integrating a higher level Semantic Grid Middleware with Web Service Resource Framework (WSRF) that extends the prototype presented in [1] informed by issues that were identified in our early experiments with the prototype. WSRF defines generic and open framework for modeling and accessing stateful resources using Web Services and Web Service Notification standardizing publish/subscribe notification for Web Services. In particular we focus on using WSRF to support data integration, workflow enactment and notification management in the leading EPSRC e-Science pilot project. We report on our experience from the implementation of our proposed model and argue that our model converges with peer-to-peer technology in a promising way forward towards enabling Semantic Grid Middleware in mobile ad-hoc networks environments.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  1. Wietrzyk, B., Radenkovic, M.: Semantic Life Science Middleware with Web Service Resource Framework. In: Proc. Fourth All Hands Meeting (2005)

    Google Scholar 

  2. Globus Toolkit 2.2. [Online]. Available, http://www.globus.org/gt2.2/

  3. LHC Computing Grid Project (LCG) Home Page (2005), [Online]. Available, http://lcg.web.cern.ch/LCG/

  4. Geddes, N.: GOSC and NGS Status. [Online]. Available, http://www.gridpp.ac.uk/gridpp12/GOSCNGS-status-Jan2005.ppt

  5. Geddes, N., Richards, A.: Grid Operations Support Centre (GOSC). [Online]. Available, http://www.nesc.ac.uk/talks/507/NESC_BBSRC_GOSC_241104.pdf

  6. Loomis, C., Hahkala, J., Orellana, J.: EGEE Middleware Architecture and Planning. EGEE [Online]. Available, https://edms.cern.ch/document/476451/

  7. Atkinson, M., et al.: Web Service Grids: An Evolutionary Approach. OMII (2004)

    Google Scholar 

  8. WSRF - The WS-Resource Framework.[Online]. Available, http://www.globus.org/wsrf/

  9. Czajkowski, K., et al.: The WS-Resource Framework. Oasis (2004)

    Google Scholar 

  10. Cerami, E.: Web Services Essentials. O’Reilly & Associates, Inc., Sebastopol (2002)

    Google Scholar 

  11. Berners-Lee, T., Hendler, J., Lassila, O.: The Semantic Web. Scientific American (2001)

    Google Scholar 

  12. Foster, I., et al.: Modeling Stateful Resources with Web Services. IBM (2004)

    Google Scholar 

  13. Priol, T.: Objects, Components, Services for grid middleware: pros & cons. In: Proc. European Grid Conference (2005)

    Google Scholar 

  14. Graham, S., et al.: Publish-Subscribe Notification for Web services. IBM (2004)

    Google Scholar 

  15. Stevens, R.D., Robinson, A.J., Goble, C.A.: myGrid: personalised bioinformatics on the information grid. Bioinformatics 19, i302–i304 (2003)

    Google Scholar 

  16. Fall, K., et al.: Reliability in MANETs with Overlays. In: Proc. Peer-to-Peer Mobile Ad Hoc Networks - New Research Issues (2005)

    Google Scholar 

  17. Oinn, T., et al.: Taverna, lessons in creating a workflow environment for the life sciences. In: Proc. GGF10 (2004)

    Google Scholar 

  18. Krishna, A., Tan, V., Lawley, R., Miles, S., Moreau, L.: myGrid Notification Service. In: Proc. UK e-Science All Hands Meeting (2003)

    Google Scholar 

  19. Graham, S., Treadwell, J.: Web Services Resource Properties 1.2. Oasis (2004)

    Google Scholar 

  20. Srinivasan, L., Banks, T.: Web Services Resource Lifetime 1.2. Oasis (2004)

    Google Scholar 

  21. Graham, S., et al.: Web Services Base Notification (2004)

    Google Scholar 

  22. Alpdemir, N., Ferris, J., Greenwood, M., Li, P., Sharman, N., Wroe, C.: The myGrid Information Model. University of Manchester, Design note Manchester (2004)

    Google Scholar 

  23. Maguire, T., Snelling, D.: Web Services Service Group 1.2. Oasis (2004)

    Google Scholar 

  24. Graham, S., et al.: Web Services Brokered Notification (2004)

    Google Scholar 

  25. Apache WSRF. [Online]. Available, http://ws.apache.org/wsrf/

  26. Pubscribe. [Online]. Available, http://ws.apache.org/pubscribe/

  27. The Jakarta Site - Apache Jakarta Tomcat (2005), [Online]. Available, http://jakarta.apache.org/tomcat/

  28. Nick Sharman, K.W., Oinn, T., Glover, K., Alpdemir, N., Wroe, C.: The myGrid Installation Guide (2005)

    Google Scholar 

  29. Bauer, C., King, G.: Hibernate in Action. Manning, Greenwich, USA (2004)

    Google Scholar 

  30. Ratnasamy, S., Francis, P., Handley, M., Karp, R., Shenker, S.: A Scalable Content-Addressable Network. In: Proc. SIGCOMM (2001)

    Google Scholar 

  31. The Network Simulator - ns-2. [Online]. Available, http://www.isi.edu/nsnam/ns/

  32. Stepanov, I.: CANU Mobility Simulation Environment (CanuMobiSim). [Online]. Available: http://canu.informatik.uni-stuttgart.de/mobisim

Download references

Author information

Authors and Affiliations

  1. School of Computer Science and IT, University of Nottingham, Jubilee Campus, Wollaton Road, Nottingham, NG8 1BB, UK

    Milena Radenkovic & Bartosz Wietrzyk

Authors
  1. Milena Radenkovic
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Bartosz Wietrzyk
    View author publications

    You can also search for this author in PubMed Google Scholar

Editor information

Editors and Affiliations

  1. STARLab, Vrije Universiteit Brussel (VUB), Bldg G/10, Pleinlaan 2, 1050, Brussels, Belgium

    Robert Meersman

  2. School of Computer Science and Information Technology, RMIT University, Bld 10.10, 376-392 Swanston Street, 3001, Melbourne, VIC, Australia

    Zahir Tari

  3. Facultad de Informática, Universidad Politécnica de Madrid, Campus de Montegancedo S/N, 28660, Boadilla del Monte, Madrid, Spain

    Pilar Herrero

Rights and permissions

Reprints and permissions

Copyright information

© 2005 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Radenkovic, M., Wietrzyk, B. (2005). Life Science Grid Middleware in a More Dynamic Environment. In: Meersman, R., Tari, Z., Herrero, P. (eds) On the Move to Meaningful Internet Systems 2005: OTM 2005 Workshops. OTM 2005. Lecture Notes in Computer Science, vol 3762. Springer, Berlin, Heidelberg. https://doi.org/10.1007/11575863_46

Download citation

  • DOI: https://doi.org/10.1007/11575863_46

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-29739-0

  • Online ISBN: 978-3-540-32132-3

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics