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2020 – today
- 2023
[j23]Sanya Bathla Taneja
, Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane-Gill, Halil Kilicoglu, Marcin P. Joachimiak, Richard D. Boyce:
Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions. J. Biomed. Informatics 140: 104341 (2023)- [j22]Scott A. Malec, Sanya Bathla Taneja, Steven M. Albert, C. Elizabeth Shaaban, Helmet T. Karim, Arthur S. Levine, Paul Munro, Tiffany J. Callahan, Richard D. Boyce:
Causal feature selection using a knowledge graph combining structured knowledge from the biomedical literature and ontologies: A use case studying depression as a risk factor for Alzheimer's disease. J. Biomed. Informatics 142: 104368 (2023) - [j21]Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Asiyah Y. Lin, Blake Martin, Nicolas A. Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingmin Aaron Zhang, Joshua C. Denny, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Melissa A. Haendel, Peter N. Robinson, Lawrence E. Hunter, Michael G. Kahn:
Ontologizing health systems data at scale: making translational discovery a reality. npj Digit. Medicine 6 (2023) - [i6]Tiffany J. Callahan, Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya Bathla Taneja, Jordan M. Wyrwa, Elena Casiraghi, Nicolas A. Matentzoglu, Justin T. Reese, Jonathan C. Silverstein, Charles Tapley Hoyt, Richard D. Boyce, Scott A. Malec, Deepak R. Unni, Marcin P. Joachimiak, Peter N. Robinson, Christopher J. Mungall, Emanuele Cavalleri, Tommaso Fontana, Giorgio Valentini, Marco Mesiti, Lucas A. Gillenwater, Brook E. Santangelo, Nicole A. Vasilevsky, Robert Hoehndorf, Tellen D. Bennett, Patrick B. Ryan, George Hripcsak, Michael G. Kahn, Michael Bada, William A. Baumgartner Jr., Lawrence E. Hunter:
An Open-Source Knowledge Graph Ecosystem for the Life Sciences. CoRR abs/2307.05727 (2023) - 2022
- [j20]Henrik Thiess, Guilherme Del Fiol, Daniel C. Malone, Ryan Cornia, Max Sibilla, Bryn Rhodes, Richard D. Boyce, Kensaku Kawamoto, Thomas J. Reese:
Coordinated use of Health Level 7 standards to support clinical decision support: Case study with shared decision making and drug-drug interactions. Int. J. Medical Informatics 162: 104749 (2022) - [j19]Richard D. Boyce, Olga Kravchenko, Subashan Perera, Jordan F. Karp, Sandra L. Kane-Gill, Charles F. Reynolds, Steven M. Albert, Steven M. Handler:
Falls prediction using the nursing home minimum dataset. J. Am. Medical Informatics Assoc. 29(9): 1497-1507 (2022) - [c26]Tanupat Boonchalermvichien, Sanya Bathla Taneja, Sandra Clark Karcher, Richard D. Boyce:
Standardizing Natural Products in Adverse Event Reports with Siamese Recurrent Networks. AMIA 2022 - [c25]Chenyu Li, Israel Dilan-Pantojas, Shyam Visweswaran, Michael J. Becich, Xia Jiang, Richard D. Boyce:
Developing and Evaluation of Computational Phenotypes of Metastatic Breast Cancer Using All of Us Data. AMIA 2022 - [c24]Ainhoa Gomez Lumbreras, Thomas J. Reese, Guilherme Del Fiol, Jason Hurwitz, Kensaku Kawamoto, Mary Brown, Richard D. Boyce, Daniel C. Malone:
Evaluation of Shared Decision-Making for Concomitant Warfarin and NSAID Medications using the DDInteract App. AMIA 2022 - [i5]Tiffany J. Callahan, Adrianne L. Stefanski, Jordan M. Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda, William A. Baumgartner Jr., Richard D. Boyce, Elena Casiraghi, Ben D. Coleman, Janine H. Collins, Sara J. Deakyne Davies, James A. Feinstein, Melissa A. Haendel, Asiyah Y. Lin, Blake Martin, Nicolas Matentzoglu, Daniella Meeker, Justin T. Reese, Jessica Sinclair, Sanya Bathla Taneja, Katy E. Trinkley, Nicole A. Vasilevsky, Andrew E. Williams, Xingman A. Zhang, Peter N. Robinson, Patrick B. Ryan, George Hripcsak, Tellen D. Bennett, Lawrence E. Hunter, Michael G. Kahn:
Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality. CoRR abs/2209.04732 (2022) - [i4]Sanya Bathla Taneja, Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane-Gill, Halil Kilicoglu, Marcin P. Joachimiak, Richard D. Boyce:
Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions. CoRR abs/2209.11950 (2022) - 2021
- [j18]Scott A. Malec, Peng Wei, Elmer V. Bernstam, Richard D. Boyce, Trevor Cohen:
Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance. J. Biomed. Informatics 117: 103719 (2021) - [c23]Lorenzo Villa Zapata, Vignesh Subbian, Richard D. Boyce, Philip D. Hansten, John R. Horn, Sheila M. Gephart, Andrew Romero, Daniel C. Malone:
Overriding Drug-Drug Interaction Alerts in Clinical Decision Support Systems: A Scoping Review. MedInfo 2021: 380-384 - [i3]Sanya Bathla Taneja, Richard D. Boyce, William T. Reynolds, Denis Newman-Griffis:
Introducing Information Retrieval for Biomedical Informatics Students. CoRR abs/2105.02746 (2021) - 2020
- [j17]Amy J. Grizzle, Lisa E. Hines, Daniel C. Malone, Olga Kravchenko, Harry Hochheiser, Richard D. Boyce:
Testing the face validity and inter-rater agreement of a simple approach to drug-drug interaction evidence assessment. J. Biomed. Informatics 101: 103355 (2020) - [c22]Linh K. Hoang, Richard D. Boyce, Nigel Bosch, Britney Stottlemyer, Mathias Brochhausen, Jodi Schneider:
Automatically classifying the evidence type of drug-drug interaction research papers as a step toward computer supported evidence curation. AMIA 2020 - [c21]Yingci Liu, Smitha Edakalavan, Richard D. Boyce:
Mapping Dental Diagnostic Concepts to SNOMED CT: A Pilot Study. AMIA 2020
2010 – 2019
- 2019
- [c20]Linh Hoang, Richard D. Boyce, Mathias Brochhausen, Joseph Utecht, Jodi Schneider:
A Proposal for Determining the Evidence Types of Biomedical Documents Using a Drug-drug Interaction Ontology and Machine Learning. AAAI Spring Symposium: Combining Machine Learning with Knowledge Engineering 2019 - [c19]Binh-Phi Nguyen, Thomas J. Reese, Stefan Decker, Daniel C. Malone, Richard D. Boyce, Oya Beyan:
Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language. MedInfo 2019: 724-728 - [i2]Y. Ye, Richard D. Boyce, M. K. Davis, Keith O. Elliston, Christos Davatzikos, Andrey Fedorov, Jean-Christophe Fillion-Robin, Ian T. Foster, John R. Gilbertson, Mervi Heiskanen, Juli D. Klemm, Andras Lasso, James V. Miller, M. Morgan, Steve Pieper, Brigitte Raumann, B. Sarachan, G. Savova, Jonathan C. Silverstein, D. Taylor, J. Zelnis, G. Q. Zhang, Michael J. Becich:
Open Source Software Sustainability Models: Initial White Paper from the Information Technology for Cancer Research Sustainability and Industry Partnership Work Group. CoRR abs/1912.12371 (2019) - 2018
- [j16]John Judkins, Jessica Tay-Sontheimer, Richard D. Boyce, Mathias Brochhausen:
Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse. J. Biomed. Semant. 9(1): 15:1-15:9 (2018) - [c18]Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Eric Chou, Mathias Brochhausen, John Judkins, Brandon T. Gufford, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine S. McCune:
Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers. AMIA 2018 - [c17]Dina Demner-Fushman, Joseph M. Tonning, Kin Wah Fung, Phong Do, Richard D. Boyce, Kirk Roberts:
Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC). AMIA 2018 - [i1]Dina Demner-Fushman, Kin Wah Fung, Phong Do, Richard D. Boyce, Travis R. Goodwin:
Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. TAC 2018 - 2017
- [j15]Richard D. Boyce, Jeremy Jao, Taylor Miller, Sandra L. Kane-Gill:
Automated Screening of Emergency Department Notes for Drug-Associated Bleeding Adverse Events Occurring in Older Adults. Appl. Clin. Inform. 08(04): 1022-1030 (2017) - [j14]Richard D. Boyce, Erica A. Voss, Vojtech Huser, Lee Evans, Christian G. Reich, Jon D. Duke, Nicholas P. Tatonetti, Tal Lorberbaum, Michel Dumontier, Manfred Hauben, Magnus Wallberg, Lili Peng, Sara Dempster, Yongqun He, Anthony G. Sena, Vassilis Koutkias, Pantelis Natsiavas, Patrick B. Ryan:
Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. J. Biomed. Semant. 8(1): 11:1-11:15 (2017) - [j13]Katrina M. Romagnoli, Richard D. Boyce, Philip E. Empey, Yifan Ning, Solomon Adams, Harry Hochheiser:
Design and evaluation of a pharmacogenomics information resource for pharmacists. J. Am. Medical Informatics Assoc. 24(4): 822-831 (2017) - [j12]Erica A. Voss, Richard D. Boyce, Patrick B. Ryan, Johan van der Lei, Peter R. Rijnbeek, Martijn J. Schuemie:
Accuracy of an automated knowledge base for identifying drug adverse reactions. J. Biomed. Informatics 66: 72-81 (2017) - [j11]Katrina M. Romagnoli, Scott D. Nelson, Lisa Hines, Philip E. Empey, Richard D. Boyce, Harry Hochheiser:
Information needs for making clinical recommendations about potential drug-drug interactions: a synthesis of literature review and interviews. BMC Medical Informatics Decis. Mak. 17(1): 21:1-21:9 (2017) - [j10]Hossein Kassiri, Aditi Chemparathy, Muhammad Tariqus Salam, Richard D. Boyce, Antoine Adamantidis, Roman Genov:
Electronic Sleep Stage Classifiers: A Survey and VLSI Design Methodology. IEEE Trans. Biomed. Circuits Syst. 11(1): 177-188 (2017) - [c16]Richard D. Boyce, Isabelle Ragueneau-Majlessi, Jingjing Yu, Jessica Sontheimer, Chris Kinsella, Mathias Brochhausen, John Judkins, Bruce Pinkleton, Rebecca L. Cooney, Mary Paine, Jeannine McCune:
Toward a reliable and interoperable public repository for natural product drug interaction study data. AMIA 2017 - [c15]Nikola Milosevic, Anay Gupta, Austin Chen, Steven DeMarco, Joshua P. Le, Jodi Schneider, Yifan Ning, Goran Nenadic, Richard D. Boyce:
Extraction of Drug-Drug Interactions from Drug Product Labeling Tables. CRI 2017 - [c14]Samuel C. Rosko, Philip Hansten, John R. Horn, Daniel C. Malone, Andrew Romero, Richard D. Boyce:
Toward shareable individualized drug interaction alerts. CRI 2017 - [c13]Joseph Utecht, Mathias Brochhausen, John Judkins, Jodi Schneider, Richard D. Boyce:
Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation. MedInfo 2017: 960-964 - 2016
- [j9]Katrina M. Romagnoli, Richard D. Boyce, Philip E. Empey, Solomon Adams, Harry Hochheiser:
Bringing clinical pharmacogenomics information to pharmacists: A qualitative study of information needs and resource requirements. Int. J. Medical Informatics 86: 54-61 (2016) - [c12]Mathias Brochhausen, Philip E. Empey, Jodi Schneider, William R. Hogan, Richard D. Boyce:
Adding Evidence Type Representation to DIDEO. ICBO/BioCreative 2016 - 2015
- [j8]Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce:
Toward a complete dataset of drug-drug interaction information from publicly available sources. J. Biomed. Informatics 55: 206-217 (2015) - [j7]Matthias Samwald, José Antonio Miñarro-Giménez, Richard D. Boyce, Robert R. Freimuth, Klaus-Peter Adlassnig, Michel Dumontier:
Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. BMC Medical Informatics Decis. Mak. 15: 12 (2015) - [c11]Jon D. Duke, Frank J. DeFalco, Chris Knoll, Vojtech Huser, Richard D. Boyce, Patrick B. Ryan:
OHDSI: An Open-Source Platform for Observational Data Analytics and Collaborative Research. AMIA 2015 - [c10]Jodi Schneider, Mathias Brochhausen, Samuel Rosko, Paolo Ciccarese, William R. Hogan, Daniel C. Malone, Yifan Ning, Tim Clark, Richard D. Boyce:
Formalizing Knowledge and Evidence about Potential Drug-drug Interactions. BDM2I@ISWC 2015 - 2014
- [c9]Aditi Chemparathy, Hossein Kassiri, Muhammad Tariqus Salam, Richard D. Boyce, Fadime Bekmambetova, Antoine Adamantidis, Roman Genov:
Wearable low-latency sleep stage classifier. BioCAS 2014: 592-595 - [c8]Jodi Schneider, Paolo Ciccarese, Tim Clark, Richard D. Boyce:
Using the Micropublications Ontology and the Open Annotation Data Model to Represent Evidence within a Drug-Drug Interaction Knowledge Base. LISC@ISWC 2014: 60-70 - 2013
- [j6]Richard D. Boyce, John R. Horn, Oktie Hassanzadeh, Anita de Waard, Jodi Schneider, Joanne S. Luciano, Majid Rastegar-Mojarad, Maria Liakata:
Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness. J. Biomed. Semant. 4: 5 (2013) - [c7]Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce:
An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. MedInfo 2013: 539-542 - [c6]Majid Rastegar-Mojarad, Richard D. Boyce, Rashmi Prasad:
UWM-TRIADS: Classifying Drug-Drug Interactions with Two-Stage SVM and Post-Processing. SemEval@NAACL-HLT 2013: 667-674 - 2012
- [j5]M. Scott Marshall, Richard D. Boyce, Helena F. Deus, Jun Zhao, Egon L. Willighagen, Matthias Samwald, Elgar Pichler, Janos G. Hajagos, Eric Prud'hommeaux, Susie Stephens:
Emerging practices for mapping and linking life sciences data using RDF - A case series. J. Web Semant. 14: 2-13 (2012) - [c5]Robert Guzman, Richard D. Boyce:
The Influence of Drug Terminologies on the Performance of the NCBO Annotator When Used to Identify Drug Entities in Drug Product Labels. AMIA 2012 - [c4]Richard D. Boyce, Gregory Gardner, Henk Harkema:
Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts. BioNLP@HLT-NAACL 2012: 206-213 - [e1]Alejandro Rodríguez González, Jyotishman Pathak, Mark D. Wilkinson, Nigam Shah, Robert Stevens, Richard D. Boyce, Ángel García-Crespo:
Proceedings of the Joint Workshop on Semantic Technologies Applied to Biomedical Informatics and Individualized Medicine, Boston, USA, November 12, 2012. CEUR Workshop Proceedings 930, CEUR-WS.org 2012 [contents] - 2010
- [c3]Richard D. Boyce, Henk Harkema, Mike Conway:
Leveraging the semantic web and natural language processing to enhance drug-mechanism knowledge in drug product labels. IHI 2010: 492-496
2000 – 2009
- 2009
- [j4]Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet:
Computing with evidence: Part I: A drug-mechanism evidence taxonomy oriented toward confidence assignment. J. Biomed. Informatics 42(6): 979-989 (2009) - [j3]Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet:
Computing with evidence: Part II: An evidential approach to predicting metabolic drug-drug interactions. J. Biomed. Informatics 42(6): 990-1003 (2009) - [j2]Richard D. Boyce, Parmit K. Chilana, Timothy M. Rose:
iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences. Nucleic Acids Res. 37(Web-Server-Issue): 222-228 (2009) - 2007
- [j1]Richard D. Boyce, Carol Collins, John R. Horn, Ira Kalet:
Modeling Drug Mechanism Knowledge Using Evidence and Truth Maintenance. IEEE Trans. Inf. Technol. Biomed. 11(4): 386-397 (2007) - 2005
- [c2]Richard D. Boyce, Carol Collins, John R. Horn, Ira J. Kalet:
Qualitative Pharmacokinetic Modeling of Drugs. AMIA 2005 - 2003
- [c1]Richard D. Boyce, Richard Chase:
Conflation System MBP. CISST 2003: 246-252
Coauthor Index
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