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ORCIDWayne Joubert
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2020 – today
- 2024
[j20]Verónica G. Melesse Vergara
, Reuben D. Budiardja, Wayne Joubert:
Early experiences evaluating the HPE/Cray ecosystem for AMD GPUs. Concurr. Comput. Pract. Exp. 36(15) (2024)- 2023
- [j19]Darren J. Hsu, Hao Lu, Aditya Kashi, Michael A. Matheson, John Gounley, Feiyi Wang, Wayne Joubert, Jens Glaser:
TwoFold: Highly accurate structure and affinity prediction for protein-ligand complexes from sequences. Int. J. High Perform. Comput. Appl. 37(6): 666-682 (2023) - [c25]Mikaela Cashman, Verónica G. Melesse Vergara, John H. Lagergren, Matthew Lane, Jean Merlet, Mikaela Atkinson, Jared Streich, Christopher E. Bradburne, Raina Plowright, Wayne Joubert, Daniel A. Jacobson:
Longitudinal Effects on Plant Species Involved in Agriculture and Pandemic Emergence Undergoing Changes in Abiotic Stress. PASC 2023: 3:1-3:10 - [c24]Jean Merlet, John H. Lagergren, Verónica Melesse Vergara, Mikaela Cashman, Christopher E. Bradburne, Raina Plowright, Emily Gurley, Wayne Joubert, Daniel A. Jacobson:
Data-Driven Whole-Genome Clustering to Detect Geospatial, Temporal, and Functional Trends in SARS-CoV-2 Evolution. PASC 2023: 26:1-26:7 - [c23]Scott Atchley, Christopher Zimmer, John Lange, David E. Bernholdt, Verónica G. Melesse Vergara, Thomas Beck, Michael J. Brim, Reuben D. Budiardja, Sunita Chandrasekaran, Markus Eisenbach, Thomas M. Evans, Matthew Ezell, Nicholas Frontiere, Antigoni Georgiadou, Joe Glenski, Philipp Grete, Steven P. Hamilton, John K. Holmen, Axel Huebl, Daniel A. Jacobson, Wayne Joubert, Kim H. McMahon, Elia Merzari, Stan G. Moore, Andrew Myers, Stephen Nichols, Sarp Oral, Thomas Papatheodore, Danny Perez, David M. Rogers, Evan Schneider, Jean-Luc Vay, P. K. Yeung:
Frontier: Exploring Exascale. SC 2023: 52:1-52:16 - [c22]Nicholas Malaya, Bronson Messer, Joseph Glenski, Antigoni Georgiadou, Justin Lietz, Kalyana C. Gottiparthi, Marc Day, Jackie Chen, Jon S. Rood, Lucas Esclapez, James B. White III, Gustav R. Jansen, Nicholas Curtis, Stephen Nichols, Jakub Kurzak, Noel Chalmers, Chip Freitag, Paul T. Bauman, Alessandro Fanfarillo, Reuben D. Budiardja, Thomas Papatheodore, Nicholas Frontiere, Damon McDougall, Matthew R. Norman, Sarat Sreepathi, Philip C. Roth, Dmytro Bykov, Noah Wolfe, Paul Mullowney, Markus Eisenbach, Marc T. Henry de Frahan, Wayne Joubert:
Experiences readying applications for Exascale. SC 2023: 53:1-53:13 - [c21]Reuben D. Budiardja, Mark A. Berrill, Markus Eisenbach, Gustav R. Jansen, Wayne Joubert, Stephen Nichols, David M. Rogers, Arnold N. Tharrington, O. E. Bronson Messer:
Ready for the Frontier: Preparing Applications for the World's First Exascale System. ISC 2023: 182-201 - [i3]Paul T. Bauman, Reuben D. Budiardja, Dmytro Bykov, Noel Chalmers, Jacqueline Chen, Nicholas Curtis, Marc Day, Markus Eisenbach, Lucas Esclapez, Alessandro Fanfarillo, William Freitag, Nicholas Frontiere, Antigoni Georgiadou, Joseph Glenski, Kalyana C. Gottiparthi, Marc T. Henry de Frahan, Gustav R. Jansen, Wayne Joubert, Justin G. Lietz, Jakub Kurzak, Nicholas Malaya, Bronson Messer, Damon McDougall, Paul Mullowney, Stephen Nichols, Matthew R. Norman, Thomas Papatheodore, Jon S. Rood, Philip C. Roth, Sarat Sreepathi, James B. White III, Noah Wolfe:
Experiences Readying Applications for Exascale. CoRR abs/2310.01586 (2023) - 2022
- [c20]Wayne Joubert, Bronson Messer, Philip C. Roth, Antigoni Georgiadou, Justin Lietz, Markus Eisenbach, Junqi Yin:
Learning to Scale the Summit: AI for Science on a Leadership Supercomputer. IPDPS Workshops 2022: 1246-1255 - [c19]Hao Lu, Michael A. Matheson, Vladyslav Oles, J. Austin Ellis, Wayne Joubert, Feiyi Wang:
Climbing the Summit and Pushing the Frontier of Mixed Precision Benchmarks at Extreme Scale. SC 2022: 78:1-78:15 - 2020
- [j18]Verónica G. Vergara Larrea, Reuben D. Budiardja, Rahulkumar Gayatri, Christopher S. Daley, Oscar R. Hernandez, Wayne Joubert:
Experiences in porting mini-applications to OpenACC and OpenMP on heterogeneous systems. Concurr. Comput. Pract. Exp. 32(20) (2020) - [j17]Lixiang Luo, Tjerk P. Straatsma, Luis Enrique Aguilar-Suárez, Ria Broer, Dmytro Bykov, Eduardo F. D'Azevedo, Shirin S. Faraji, Kalyana C. Gottiparthi, Coen de Graaf, James Austin Harris, Remco W. A. Havenith, Hans Jørgen Aagard Jensen, Wayne Joubert, R. K. Kathir, Jeff Larkin, Ying Wai Li, Dmitry I. Lyakh, O. E. Bronson Messer, Matthew R. Norman, Joseph C. Oefelein, Ramanan Sankaran, Andreas F. Tillack, Ashleigh L. Barnes, Lucas Visscher, Jack C. Wells, Meilani Wibowo:
Pre-exascale accelerated application development: The ORNL Summit experience. IBM J. Res. Dev. 64(3/4): 11:1-11:21 (2020)
2010 – 2019
- 2019
- [j16]Verónica G. Vergara Larrea, Michael J. Brim, Wayne Joubert, Swen Boehm, Matthew B. Baker, Oscar R. Hernandez, Sarp Oral, James Simmons, Don Maxwell:
Are we witnessing the spectre of an HPC meltdown? Concurr. Comput. Pract. Exp. 31(16) (2019) - [j15]Robert Searles, Sunita Chandrasekaran, Wayne Joubert, Oscar R. Hernandez:
MPI + OpenACC: Accelerating radiation transport mini-application, minisweep, on heterogeneous systems. Comput. Phys. Commun. 236: 176-187 (2019) - [j14]David E. Womble, Mallikarjun Shankar, Wayne Joubert, J. Travis Johnston, Jack C. Wells, Jeffrey A. Nichols:
Early experiences on Summit: Data analytics and AI applications. IBM J. Res. Dev. 63(6): 2:1-2:9 (2019) - [j13]M. Graham Lopez, Wayne Joubert, Verónica G. Vergara Larrea, Oscar R. Hernandez, Azzam Haidar, Stanimire Tomov, Jack J. Dongarra:
Evaluation of directive-based performance portable programming models. Int. J. High Perform. Comput. Netw. 14(2): 165-182 (2019) - [j12]Wayne Joubert, James Nance, Sharlee Climer, Deborah A. Weighill, Daniel A. Jacobson:
Parallel accelerated Custom Correlation Coefficient calculations for genomics applications. Parallel Comput. 84: 15-23 (2019) - [c18]Verónica G. Vergara Larrea, Wayne Joubert, Michael J. Brim, Reuben D. Budiardja, Don Maxwell, Matthew Ezell, Christopher Zimmer, Swen Boehm, Wael R. Elwasif, Sarp Oral, Chris Fuson, Daniel Pelfrey, Oscar R. Hernandez, Dustin Leverman, Jesse Hanley, Mark A. Berrill, Arnold N. Tharrington:
Scaling the Summit: Deploying the World's Fastest Supercomputer. ISC Workshops 2019: 330-351 - 2018
- [j11]O. E. Bronson Messer, Eduardo F. D'Azevedo, Judy Hill, Wayne Joubert, Mark A. Berrill, Christopher Zimmer:
MiniApps derived from production HPC applications using multiple programing models. Int. J. High Perform. Comput. Appl. 32(4): 582-593 (2018) - [j10]Wayne Joubert, James Nance, Deborah A. Weighill, Daniel A. Jacobson:
Parallel accelerated vector similarity calculations for genomics applications. Parallel Comput. 75: 130-145 (2018) - [c17]Robert Searles, Sunita Chandrasekaran, Wayne Joubert, Oscar R. Hernandez:
Abstractions and Directives for Adapting Wavefront Algorithms to Future Architectures. PASC 2018: 4:1-4:10 - [c16]Wenlu Zhang, Wayne Joubert, Peng Wang, Bei Wang, William Tang, Matthew Niemerg, Lei Shi, Sam Taimourzadeh, Jian Bao, Zhihong Lin:
Heterogeneous Programming and Optimization of Gyrokinetic Toroidal Code Using Directives. WACCPD@SC 2018: 3-21 - [c15]Sudharshan S. Vazhkudai, Bronis R. de Supinski, Arthur S. Bland, Al Geist, James C. Sexton, Jim Kahle, Christopher Zimmer, Scott Atchley, Sarp Oral, Don E. Maxwell, Verónica G. Vergara Larrea, Adam Bertsch, Robin Goldstone, Wayne Joubert, Chris Chambreau, David Appelhans, Robert Blackmore, Ben Casses, George Chochia, Gene Davison, Matthew A. Ezell, Tom Gooding, Elsa Gonsiorowski, Leopold Grinberg, Bill Hanson, Bill Hartner, Ian Karlin, Matthew L. Leininger, Dustin Leverman, Chris Marroquin, Adam Moody, Martin Ohmacht, Ramesh Pankajakshan, Fernando Pizzano, James H. Rogers, Bryan S. Rosenburg, Drew Schmidt, Mallikarjun Shankar, Feiyi Wang, Py Watson, Bob Walkup, Lance D. Weems, Junqi Yin:
The design, deployment, and evaluation of the CORAL pre-exascale systems. SC 2018: 52:1-52:12 - [c14]Wayne Joubert, Deborah A. Weighill, David Kainer, Sharlee Climer, Amy Justice, Kjiersten Fagnan, Daniel A. Jacobson:
Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction. SC 2018: 57:1-57:14 - 2017
- [c13]Verónica G. Vergara Larrea, Wayne Joubert, Mark A. Berrill, Swen Boehm, Arnold N. Tharrington, Wael R. Elwasif, Don E. Maxwell:
Experiences Evaluating Functionality and Performance of IBM POWER8+ Systems. ISC Workshops 2017: 254-274 - [i2]Wayne Joubert, James Nance, Deborah A. Weighill, Daniel A. Jacobson:
Parallel Accelerated Vector Similarity Calculations for Genomics Applications. CoRR abs/1705.08210 (2017) - [i1]Wayne Joubert, James Nance, Sharlee Climer, Deborah A. Weighill, Daniel A. Jacobson:
Parallel Accelerated Custom Correlation Coefficient Calculations for Genomics Applications. CoRR abs/1705.08213 (2017) - 2016
- [c12]M. Graham Lopez, Verónica G. Vergara Larrea, Wayne Joubert, Oscar R. Hernandez, Azzam Haidar, Stanimire Tomov, Jack J. Dongarra:
Towards Achieving Performance Portability Using Directives for Accelerators. WACCPD@SC 2016: 13-24 - [c11]Guido Juckeland, Oscar R. Hernandez, Arpith C. Jacob, Daniel Neilson, Verónica G. Vergara Larrea, Sandra Wienke, Alexander Bobyr, William C. Brantley, Sunita Chandrasekaran, Mathew E. Colgrove, Alexander Grund, Robert Henschel, Wayne Joubert, Matthias S. Müller, Dave Raddatz, Pavel Shelepugin, Brian Whitney, Bo Wang, Kalyan Kumaran:
From Describing to Prescribing Parallelism: Translating the SPEC ACCEL OpenACC Suite to OpenMP Target Directives. ISC Workshops 2016: 470-488 - 2015
- [j9]Wayne Joubert, Rick Archibald, Mark A. Berrill, W. Michael Brown, Markus Eisenbach, Ray W. Grout, Jeff Larkin, John M. Levesque, Bronson Messer, Matthew R. Norman, Bobby Philip, Ramanan Sankaran, Arnold N. Tharrington, John A. Turner:
Accelerated application development: The ORNL Titan experience. Comput. Electr. Eng. 46: 123-138 (2015) - [c10]O. E. Bronson Messer, Eduardo F. D'Azevedo, Judith C. Hill, Wayne Joubert, S. Laosooksathit, Arnold N. Tharrington:
Developing MiniApps on Modern Platforms Using Multiple Programming Models. CLUSTER 2015: 753-759 - [c9]Christos Kartsaklis, Wayne Joubert, Oscar R. Hernandez, Markus Eisenbach, Wael R. Elwasif, David E. Bernholdt:
CUDA Grid-Level Task Progression Algorithms. HPCC/CSS/ICESS 2015: 1628-1632 - [c8]Diego Rossinelli, Yu-Hang Tang, Kirill Lykov, Dmitry Alexeev, Massimo Bernaschi, Panagiotis E. Hadjidoukas, Mauro Bisson, Wayne Joubert, Christian Conti, George E. Karniadakis, Massimiliano Fatica, Igor Pivkin, Petros Koumoutsakos:
The in-silico lab-on-a-chip: petascale and high-throughput simulations of microfluidics at cell resolution. SC 2015: 2:1-2:12 - 2012
- [c7]Wayne Joubert, Shi-Quan Su:
An analysis of computational workloads for the ORNL Jaguar system. ICS 2012: 247-256 - [c6]Christos Kartsaklis, Oscar R. Hernandez, Chung-Hsing Hsu, Thomas Ilsche, Wayne Joubert, Richard L. Graham:
HERCULES: A Pattern Driven Code Transformation System. IPDPS Workshops 2012: 574-583 - [c5]Christopher Baker, Gregory G. Davidson, Thomas M. Evans, Steven P. Hamilton, Joshua J. Jarrell, Wayne Joubert:
High performance radiation transport simulations: preparing for Titan. SC 2012: 47
1990 – 1999
- 1999
- [c4]Wayne Joubert:
Results on Parallelization Strategies for ILU Preconditioners. PP 1999 - 1996
- [j8]Vance Faber, Wayne Joubert, Emanuel Knill, Thomas A. Manteuffel:
Minimal Residual Method Stronger than Polynomial Preconditioning. SIAM J. Matrix Anal. Appl. 17(4): 707-729 (1996) - [j7]Alfred A. Lorber, Graham F. Carey, Wayne Joubert:
ODE Recursions and Iterative Solvers for Linear Equations. SIAM J. Sci. Comput. 17(1): 65-77 (1996) - 1994
- [j6]Wayne Joubert, Graham F. Carey:
Embedded Gradient Iterative Solution of a Class of Nonlinear Pde's on the Connection Machine. Int. J. High Speed Comput. 6(2): 277-286 (1994) - [j5]Wayne Joubert, Thomas Oppe:
Improved SSOR and incomplete Cholesky solution of linear equations on shared memory and distributed memory parallel computers. Numer. Linear Algebra Appl. 1(3): 287-311 (1994) - [j4]Wayne Joubert:
On the convergence behavior of the restarted GMRES algorithm for solving nonsymmetric linear systems. Numer. Linear Algebra Appl. 1(5): 427-447 (1994) - [j3]Wayne Joubert:
A Robust GMRES-Based Adaptive Polynomial Preconditioning Algorithm for Nonsymmetric Linear Systems. SIAM J. Sci. Comput. 15(2): 427-439 (1994) - 1993
- [c3]Wayne Joubert, Graham F. Carey:
PCG: A Software Package for the Iterative Solution of Linear Systems on Scalar, Vector and Parallel Computers. PPSC 1993: 515-518 - 1992
- [j2]Wayne Joubert:
Lanczos Methods for the Solution of Nonsymmetric Systems of Linear Equations. SIAM J. Matrix Anal. Appl. 13(3): 926-943 (1992) - [j1]Wayne Joubert, Thomas A. Manteuffel, Seymour V. Parter, Sze-Ping Wong:
Preconditioning Second-Order Elliptic Operators: Experiment and Theory. SIAM J. Sci. Comput. 13(1): 259-288 (1992) - 1991
- [c2]Wayne Joubert, Graham F. Carey:
Parallelizable Restarted Iterative Methods for Nonsymmetric Linear Systems. PP 1991: 138-143 - [c1]Wayne Joubert, Peter Highnam, Graham F. Carey:
PCG/CM: A Package for the Iterative Solution of Large Sparse Linear Systems ond the Connection Machine. PP 1991: 631-336
Coauthor Index
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