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ORCIDMichael C. Schatz
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2020 – today
- 2024
[c4]Stephen Hwang, Nathaniel K. Brown, Omar Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead:
MEM-Based Pangenome Indexing for k-mer Queries. WABI 2024: 4:1-4:17- 2023
- [j20]Aysam Guerler
, Dannon Baker, Marius van den Beek, Björn A. Grüning, Dave Bouvier, Nate Coraor, Stephen D. Shank, Jordan D. Zehr, Michael C. Schatz, Anton Nekrutenko:
Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy. BMC Bioinform. 24(1): 263 (2023) - 2022
- [j19]Arun Das, Michael C. Schatz:
Sketching and sampling approaches for fast and accurate long read classification. BMC Bioinform. 23(1): 452 (2022) - [j18]Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs:
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. Nucleic Acids Res. 50(W1): 345-351 (2022) - [i1]Rosa Alcazar, Maria Alvarez, Rachel Arnold, Mentewab Ayalew, Lyle G. Best, Michael C. Campbell, Kamal Chowdhury, Katherine E. L. Cox, Christina Daulton, Youping Deng, Carla Easter, Karla Fuller, Shazia Tabassum Hakim, Ava M. Hoffman, Natalie Kucher, Andrew Lee, Joslynn Lee, Jeffrey T. Leek, Robert Meller, Loyda B. Méndez, Miguel P. Méndez-González, Stephen Mosher, Michele Nishiguchi, Siddharth Pratap, Tiffany Rolle, Sourav Roy, Rachel Saidi, Michael C. Schatz, Shurjo Sen, James Sniezek, Edu Suarez Martinez, Frederick Tan, Jennifer Vessio, Karriem Watson, Wendy Westbroek, Joseph Wilcox, Xianfa Xie:
Diversifying the Genomic Data Science Research Community. CoRR abs/2201.08443 (2022) - 2021
- [j17]Maria Nattestad, Robert Aboukhalil, Chen-Shan Chin, Michael C. Schatz:
Ribbon: intuitive visualization for complex genomic variation. Bioinform. 37(3): 413-415 (2021) - [j16]Melanie Kirsche, Arun Das, Michael C. Schatz:
Sapling: accelerating suffix array queries with learned data models. Bioinform. 37(6): 744-749 (2021) - 2020
- [j15]Charlotte A. Darby, Ravi Gaddipati, Michael C. Schatz, Ben Langmead:
Vargas: heuristic-free alignment for assessing linear and graph read aligners. Bioinform. 36(12): 3712-3718 (2020) - [j14]Ruibang Luo, Tak Wah Lam, Michael C. Schatz:
Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants. Int. J. Comput. Biol. Drug Des. 13(5/6): 431-437 (2020)
2010 – 2019
- 2019
- [j13]Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz:
Recovering rearranged cancer chromosomes from karyotype graphs. BMC Bioinform. 20-S(20): 641 (2019) - 2017
- [j12]Gregory W. Vurture, Fritz J. Sedlazeck, Maria Nattestad, Charles J. Underwood, Han Fang, James Gurtowski, Michael C. Schatz:
GenomeScope: fast reference-free genome profiling from short reads. Bioinform. 33(14): 2202-2204 (2017) - 2016
- [j11]Maria Nattestad, Michael C. Schatz:
Assemblytics: a web analytics tool for the detection of variants from an assembly. Bioinform. 32(19): 3021-3023 (2016) - [c3]Mohammad Ruhul Amin, Steven Skiena, Michael C. Schatz:
NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing reads. ICCABS 2016: 1-6 - 2014
- [j10]Shoshana Marcus, Hayan Lee, Michael C. Schatz:
SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips. Bioinform. 30(24): 3476-3483 (2014) - [j9]Matthew A. Titmus, James Gurtowski, Michael C. Schatz:
Answering the demands of digital genomics. Concurr. Comput. Pract. Exp. 26(4): 917-928 (2014) - [j8]Ivan Iossifov, Brian J. O'Roak, Stephan J. Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A. Stessman, Kali T. Witherspoon, Laura Vives, Karynne E. Patterson, Joshua D. Smith, Bryan Paeper, Deborah A. Nickerson, Jeanselle Dea, Shan Dong, Luis E. Gonzalez, Jeffrey D. Mandell, Shrikant M. Mane, Michael T. Murtha, Catherine A. Sullivan, Michael F. Walker, Zainulabedin Waqar, Liping Wei, A. Jeremy Willsey, Boris Yamrom, Yoon-ha Lee, Ewa Grabowska, Ertugrul Dalkic, Zi-Hua Wang, Steven Marks, Peter Andrews, Anthony Leotta, Jude Kendall, Inessa Hakker, Julie Rosenbaum, Beicong Ma, Linda Rodgers, Jennifer Troge, Giuseppe Narzisi, Seungtai Yoon, Michael C. Schatz, Kenny Ye, W. Richard McCombie, Jay Shendure, Evan E. Eichler, Matthew W. State, Michael Wigler:
The contribution of de novo coding mutations to autism spectrum disorder. Nat. 515(7526): 216-221 (2014) - [c2]Giuseppe Narzisi, Bud Mishra, Michael C. Schatz:
On Algorithmic Complexity of Biomolecular Sequence Assembly Problem. AlCoB 2014: 183-195 - [c1]Philip D. Blood, Shoshana Marcus, Michael C. Schatz:
Large-scale Sequencing and Assembly of Cereal Genomes Using Blacklight. XSEDE 2014: 20:1-20:6 - 2013
- [j7]Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop:
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings Bioinform. 14(2): 213-224 (2013) - 2012
- [j6]Hayan Lee, Michael C. Schatz:
Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score. Bioinform. 28(16): 2097-2105 (2012) - 2010
- [j5]Carl Kingsford, Michael C. Schatz, Mihai Pop:
Assembly complexity of prokaryotic genomes using short reads. BMC Bioinform. 11: 21 (2010)
2000 – 2009
- 2009
- [j4]Michael C. Schatz:
CloudBurst: highly sensitive read mapping with MapReduce. Bioinform. 25(11): 1363-1369 (2009) - [j3]Saket Navlakha, Michael C. Schatz, Carl Kingsford:
Revealing Biological Modules via Graph Summarization. J. Comput. Biol. 16(2): 253-264 (2009) - [j2]Cole Trapnell, Michael C. Schatz:
Optimizing data intensive GPGPU computations for DNA sequence alignment. Parallel Comput. 35(8-9): 429-440 (2009) - 2007
- [j1]Michael C. Schatz, Cole Trapnell, Arthur L. Delcher, Amitabh Varshney:
High-throughput sequence alignment using Graphics Processing Units. BMC Bioinform. 8 (2007)
Coauthor Index
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