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ORCIDSiddhartha Jonnalagadda
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2020 – today
- 2022
[c22]Jiacheng Xu, Siddhartha Jonnalagadda, Greg Durrett:
Massive-scale Decoding for Text Generation using Lattices. NAACL-HLT 2022: 4659-4676- 2021
- [c21]Maryam Zolnoori, Sasha Vergez, Zoran Kostic, Siddhartha R. Jonnalagadda, Maxim Topaz:
Feasibility study of audio recording patient-clinician verbal communications in home healthcare settings. AMIA 2021
2010 – 2019
- 2017
- [j16]Jiantao Bian, Mohammad Amin Morid
, Siddhartha Jonnalagadda, Gang Luo, Guilherme Del Fiol:
Automatic identification of high impact articles in PubMed to support clinical decision making. J. Biomed. Informatics 73: 95-103 (2017) - 2016
- [j15]Guilherme Del Fiol, Javed Mostafa, Dongqiuye Pu, Richard Medlin, Stacey Slager, Siddhartha Jonnalagadda, Charlene R. Weir:
Formative evaluation of a patient-specific clinical knowledge summarization tool. Int. J. Medical Informatics 86: 126-134 (2016) - [j14]Mohammad Amin Morid, Marcelo Fiszman, Kalpana Raja, Siddhartha Jonnalagadda, Guilherme Del Fiol:
Classification of clinically useful sentences in clinical evidence resources. J. Biomed. Informatics 60: 14-22 (2016) - [j13]Duy Duc An Bui, Guilherme Del Fiol, Siddhartha Jonnalagadda:
PDF text classification to leverage information extraction from publication reports. J. Biomed. Informatics 61: 141-148 (2016) - [j12]Duy Duc An Bui, Guilherme Del Fiol, John F. Hurdle, Siddhartha Jonnalagadda:
Extractive text summarization system to aid data extraction from full text in systematic review development. J. Biomed. Informatics 64: 265-272 (2016) - [c20]Heejun Kim, Jiantao Bian, Javed Mostafa, Siddhartha R. Jonnalagadda, Guilherme Del Fiol:
Feasibility of Extracting Key Elements from ClinicalTrials.gov to Support Clinicians' Patient Care Decision. AMIA 2016 - [c19]Kalpana Raja, Naman Dasot, Pawan Goyal, Siddhartha R. Jonnalagadda:
Towards Evidence-Based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns. CRI 2016 - [i11]Tanmay Basu, Shraman Kumar, Abhishek Kalyan, Priyanka Jayaswal, Pawan Goyal, Stephen Pettifer, Siddhartha Jonnalagadda:
A Novel Framework to Expedite Systematic Reviews by Automatically Building Information Extraction Training Corpora. CoRR abs/1606.06424 (2016) - [i10]Prakash Reddy Putta, John J. Dzak III, Siddhartha R. Jonnalagadda:
Automatically extracting, ranking and visually summarizing the treatments for a disease. CoRR abs/1609.01574 (2016) - [i9]Shu Dong, R. Kannan Mutharasan, Siddhartha Jonnalagadda:
Using Natural Language Processing to Screen Patients with Active Heart Failure: An Exploration for Hospital-wide Surveillance. CoRR abs/1609.01580 (2016) - [i8]Ravi Prakash Garg, Shu Dong, Sanjiv J. Shah, Siddhartha R. Jonnalagadda:
A Bootstrap Machine Learning Approach to Identify Rare Disease Patients from Electronic Health Records. CoRR abs/1609.01586 (2016) - [i7]Ravi Prakash Garg, Kalpana Raja, Siddhartha R. Jonnalagadda:
CRTS: A type system for representing clinical recommendations. CoRR abs/1609.01592 (2016) - [i6]Abhishek Kalyan Adupa, Ravi Prakash Garg, Jessica Corona-Cox, Sanjiv J. Shah, Siddhartha R. Jonnalagadda:
An Information Extraction Approach to Prescreen Heart Failure Patients for Clinical Trials. CoRR abs/1609.01594 (2016) - [i5]Kalpana Raja, Andrew J. Sauer, Ravi Prakash Garg, Melanie R. Klerer, Siddhartha R. Jonnalagadda:
A Hybrid Citation Retrieval Algorithm for Evidence-based Clinical Knowledge Summarization: Combining Concept Extraction, Vector Similarity and Query Expansion for High Precision. CoRR abs/1609.01597 (2016) - 2015
- [j11]Duy Duc An Bui, Siddhartha Jonnalagadda, Guilherme Del Fiol:
Automatically finding relevant citations for clinical guideline development. J. Biomed. Informatics 57: 436-445 (2015) - [j10]James Cormack, Chinmoy Nath, David Milward, Kalpana Raja, Siddhartha R. Jonnalagadda:
Agile text mining for the 2014 i2b2/UTHealth Cardiac risk factors challenge. J. Biomed. Informatics 58: S120-S127 (2015) - [c18]Mohammad Amin Morid, Siddhartha R. Jonnalagadda, Marcelo Fiszman, Kalpana Raja, Guilherme Del Fiol:
Classification of Clinically Useful Sentences in MEDLINE. AMIA 2015 - [c17]Chinmoy Nath, Mazen Albaghdadi, Siddhartha R. Jonnalagadda:
Automated Approach to Extract Cardiovascular Phenotypes from Echocardiography Reports. AMIA 2015 - [c16]Kalpana Raja, Andrew J. Sauer, Melanie R. Klerer, Siddhartha R. Jonnalagadda:
Automated Citation Retrieval System for Clinical Knowledge Management. AMIA 2015 - [c15]Jakob Stöber, Bret S. E. Heale, Kelley Fulghum, Guilherme Del Fiol, Heejun Kim, Kalpana Raja, Siddhartha Jonnalagadda:
Concept based Information Retrieval for Clinical Case Summaries. TREC 2015 - [p1]Kalpana Raja, Siddhartha Jonnalagadda:
Natural Language Processing and Data Mining for Clinical Text. Healthcare Data Analytics 2015: 219-249 - 2014
- [j9]Rashmi Mishra, Jiantao Bian, Marcelo Fiszman, Charlene R. Weir, Siddhartha Jonnalagadda, Javed Mostafa, Guilherme Del Fiol:
Text summarization in the biomedical domain: A systematic review of recent research. J. Biomed. Informatics 52: 457-467 (2014) - [c14]Siddhartha Jonnalagadda, Soheil Moosavinasab, Chinmoy Nath, Dingcheng Li, Christopher G. Chute, Hongfang Liu:
An Automated Approach for Ranking Journals to Help in Clinician Decision Support. AMIA 2014 - 2013
- [j8]Kavishwar B. Wagholikar, Manabu Torii, Siddhartha Jonnalagadda, Hongfang Liu:
Pooling annotated corpora for clinical concept extraction. J. Biomed. Semant. 4: 3 (2013) - [j7]Siddhartha Jonnalagadda, Diana B. Petitti:
A new iterative method to reduce workload in systematic review process. Int. J. Comput. Biol. Drug Des. 6(1/2): 5-17 (2013) - [j6]Sunghwan Sohn, Kavishwar B. Wagholikar, Dingcheng Li, Siddhartha Jonnalagadda, Cui Tao, Ravikumar Komandur Elayavilli, Hongfang Liu:
Comprehensive temporal information detection from clinical text: medical events, time, and TLINK identification. J. Am. Medical Informatics Assoc. 20(5): 836-842 (2013) - [j5]Siddhartha Jonnalagadda, Guilherme Del Fiol, Richard Medlin, Charlene R. Weir, Marcelo Fiszman, Javed Mostafa, Hongfang Liu:
Automatically extracting sentences from Medline citations to support clinicians' information needs. J. Am. Medical Informatics Assoc. 20(5): 995-1000 (2013) - [c13]Siddhartha Jonnalagadda, Christopher G. Chute, Hongfang Liu:
Prioritize journals relevant to a clinical topic: A survey of US cardiologists about heart failure. AMIA 2013 - [c12]Rashmi Mishra, Guilherme Del Fiol, Halil Kilicoglu, Siddhartha Jonnalagadda, Marcelo Fiszman:
Automatically Extracting Clinically Useful Sentences from UpToDate to Support Clinicians' Information Needs. AMIA 2013 - [c11]Siddhartha Jonnalagadda, Soheil Moosavinasab, Dingcheng Li, Martin D. Abel, Christopher G. Chute, Hongfang Liu:
Prioritizing journals relevant to a topic for addressing clinicians' information needs. BIBM 2013: 5-6 - [c10]Dingcheng Li, Hongfang Liu, Christopher G. Chute, Siddhartha Jonnalagadda:
Towards assigning references using semantic, journal and citation relevance. BIBM 2013: 499-503 - [c9]Hongfang Liu, Kavishwar B. Wagholikar, Siddhartha Jonnalagadda, Sunghwan Sohn:
Integrated cTAKES for Concept Mention Detection and Normalization. CLEF (Working Notes) 2013 - [c8]Mingyuan Zhang, Guilherme Del Fiol, Randall Grout, Siddhartha Jonnalagadda, Richard Medlin, Rashmi Mishra, Charlene R. Weir, Hongfang Liu, Javed Mostafa, Marcelo Fiszman:
Automatic Identification of Comparative Effectiveness Research from Medline Citations to Support Clinicians' Treatment Information Needs. MedInfo 2013: 846-850 - 2012
- [j4]Siddhartha Jonnalagadda, Ryan Peeler, Philip Topham:
Discovering opinion leaders for medical topics using news articles. J. Biomed. Semant. 3: 2 (2012) - [j3]Siddhartha Jonnalagadda, Dingcheng Li, Sunghwan Sohn, Stephen Tze-Inn Wu, Kavishwar B. Wagholikar, Manabu Torii, Hongfang Liu:
Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules. J. Am. Medical Informatics Assoc. 19(5): 867-874 (2012) - [j2]Siddhartha Jonnalagadda, Trevor Cohen, Stephen T. Wu, Graciela Gonzalez:
Enhancing clinical concept extraction with distributional semantics. J. Biomed. Informatics 45(1): 129-140 (2012) - [c7]Hongfang Liu, Stephen T. Wu, Dingcheng Li, Siddhartha Jonnalagadda, Sunghwan Sohn, Kavishwar B. Wagholikar, Peter J. Haug, Stanley M. Huff, Christopher G. Chute:
Towards a semantic lexicon for clinical natural language processing. AMIA 2012 - [c6]Stephen T. Wu, Young J. Juhn, Sunghwan Sohn, Ravikumar Komandur Elayavilli, Kavishwar B. Wagholikar, Siddhartha Jonnalagadda, Hongfang Liu:
Asthma Status Identification with Natural Language Processing. AMIA 2012 - [c5]Siddhartha Jonnalagadda, Guilherme Del Fiol, Richard Medlin, Charlene R. Weir, Marcelo Fiszman, Javed Mostafa, Hongfang Liu:
Automatically Extracting Sentences from Medline Citations to Support Clinicians' Information Needs. HISB 2012: 72 - [c4]Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar B. Wagholikar, Stephen T. Wu, Christopher G. Chute, Hongfang Liu, Scott R. Halgrim:
Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. HISB 2012: 118 - 2011
- [b1]Siddhartha Jonnalagadda:
An Effective Approach to Biomedical Information Extraction with Limited Training Data. Arizona State University, Tempe, USA, 2011 - [c3]Ehsan Emadzadeh, Siddhartha Jonnalagadda, Graciela Gonzalez:
Evaluating Distributional Semantic and Feature Selection for Extracting Relationships from Biological Text. ICMLA (2) 2011: 66-71 - [i4]Siddhartha Jonnalagadda, Philip Topham:
NEMO: Extraction and normalization of organization names from PubMed affiliation strings. CoRR abs/1107.5743 (2011) - [i3]Siddhartha Jonnalagadda, Graciela Gonzalez:
BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction. CoRR abs/1107.5744 (2011) - 2010
- [j1]Jörg Hakenberg, Robert Leaman, Nguyen Ha Vo, Siddhartha Jonnalagadda, Ryan Sullivan, Christopher Miller, Luis Tari, Chitta Baral, Graciela Gonzalez:
Efficient Extraction of Protein-Protein Interactions from Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 481-494 (2010) - [c2]Siddhartha Jonnalagadda, Robert Leaman, Trevor Cohen, Graciela Gonzalez:
A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. CICLing 2010: 224-235 - [i2]Siddhartha Jonnalagadda, Graciela Gonzalez:
Sentence Simplification Aids Protein-Protein Interaction Extraction. CoRR abs/1001.4273 (2010) - [i1]Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez:
Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text. CoRR abs/1001.4277 (2010)
2000 – 2009
- 2009
- [c1]Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez:
Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text. HLT-NAACL (Short Papers) 2009: 177-180
Coauthor Index
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