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Zhaohui S. Qin
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- affiliation: Emory University, Atlanta, GA, USA
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2020 – today
- 2024
- [j38]Shiyu Wang, Yuanqi Du, Xiaojie Guo, Bo Pan, Zhaohui S. Qin, Liang Zhao:
Controllable Data Generation by Deep Learning: A Review. ACM Comput. Surv. 56(9): 228:1-228:38 (2024) - [j37]Shaojun Yu, Junjie Wu, Yumeng Shao, Deqiang Qiu, Zhaohui S. Qin:
A novel classification framework for genome-wide association study of whole brain MRI images using deep learning. PLoS Comput. Biol. 20(10): 1012527 (2024) - 2023
- [j36]Ramin Homayouni, Prashanti Manda, Aik Choon Tan, Zhaohui S. Qin:
Editorial: AI and data science in drug development and public health: Highlights from the MCBIOS 2022 conference. Frontiers Big Data 6 (2023) - 2022
- [j35]Zhen Cao, Yanting Huang, Ran Duan, Peng Jin, Zhaohui S. Qin, Shihua Zhang:
Disease category-specific annotation of variants using an ensemble learning framework. Briefings Bioinform. 23(1) (2022) - [j34]Wenjing Ma, Sumeet Sharma, Peng Jin, Shannon L. Gourley, Zhaohui S. Qin:
LRcell: detecting the source of differential expression at the sub-cell-type level from bulk RNA-seq data. Briefings Bioinform. 23(3) (2022) - [j33]Da Yan, Zhaohui S. Qin, Debswapna Bhattacharya, Jake Y. Chen:
Guest Editorial for Selected Papers From BIOKDD 2021. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3068-3069 (2022) - 2021
- [j32]Boqi Wang, James Yang, Steven Qiu, Yongsheng Bai, Zhaohui S. Qin:
Systematic Exploration in Tissue-Pathway Associations of Complex Traits Using Comprehensive eQTLs Catalog. Frontiers Big Data 4: 719737 (2021) - [j31]Zhaohui S. Qin:
A wonderful time - exciting progress made in the past 20 years in genetics powered by the Human Genome Project. Quant. Biol. 9(4): 366-370 (2021) - 2020
- [j30]Tianlei Xu, Xiaoqi Zheng, Ben Li, Peng Jin, Zhaohui S. Qin, Hao Wu:
A comprehensive review of computational prediction of genome-wide features. Briefings Bioinform. 21(1): 120-134 (2020) - [j29]Tianlei Xu, Peng Jin, Zhaohui S. Qin:
Regulatory annotation of genomic intervals based on tissue-specific expression QTLs. Bioinform. 36(3): 690-697 (2020) - [j28]Guodong Yang, Aiqun Ma, Zhaohui S. Qin, Li Chen:
Application of topic models to a compendium of ChIP-Seq datasets uncovers recurrent transcriptional regulatory modules. Bioinform. 36(8): 2352-2358 (2020) - [j27]Jonathan D. Wren, Yongsheng Bai, Zhaohui S. Qin, Da Yan, Ramin Homayouni:
Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. BMC Bioinform. 21-S(4): 254 (2020) - [j26]Rongrong Zhang, Ming Hu, Yu Zhu, Zhaohui S. Qin, Ke Deng, Jun S. Liu:
Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model. IEEE ACM Trans. Comput. Biol. Bioinform. 17(2): 647-656 (2020)
2010 – 2019
- 2019
- [j25]Axel Poulet, Ben Li, Tristan Dubos, Juan Carlos Rivera-Mulia, David M. Gilbert, Zhaohui S. Qin:
RT States: systematic annotation of the human genome using cell type-specific replication timing programs. Bioinform. 35(13): 2167-2176 (2019) - 2018
- [j24]Payam Karisani, Zhaohui S. Qin, Eugene Agichtein:
Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval. Database J. Biol. Databases Curation 2018: bax104 (2018) - 2017
- [j23]Xiaobo Sun, William S. Pittard, Tianlei Xu, Li Chen, Michael E. Zwick, Xiaoqian Jiang, Fusheng Wang, Zhaohui S. Qin:
Omicseq: a web-based search engine for exploring omics datasets. Nucleic Acids Res. 45(Webserver-Issue): W445-W452 (2017) - [j22]Zhaohui S. Qin:
Special collection of bioinformatics in the era of precision medicine. Quant. Biol. 5(4): 277-279 (2017) - [c7]Xiaobo Sun, Fusheng Wang, Zhaohui S. Qin:
High Performance Merging of Massive Data from Genome-Wide Association Studies. DMAH@VLDB 2017: 36-40 - 2016
- [j21]Zheng Xu, Guosheng Zhang, Fulai Jin, Mengjie Chen, Terrence S. Furey, Patrick F. Sullivan, Zhaohui S. Qin, Ming Hu, Yun Li:
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data. Bioinform. 32(5): 650-656 (2016) - [j20]Ben Li, Zhaonan Sun, Qing He, Yu Zhu, Zhaohui S. Qin:
Bayesian inference with historical data-based informative priors improves detection of differentially expressed genes. Bioinform. 32(5): 682-689 (2016) - [j19]Li Chen, Zhaohui S. Qin:
traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals. Bioinform. 32(8): 1214-1216 (2016) - [c6]Yongqun He, Zhaohui S. Qin, Jie Zheng:
EGO: A Biomedical Ontology for Integrative Epigenome Representation and Analysis. ICBO/BioCreative 2016 - 2015
- [j18]Li Chen, Chi Wang, Zhaohui S. Qin, Hao Wu:
A novel statistical method for quantitative comparison of multiple ChIP-seq datasets. Bioinform. 31(12): 1889-1896 (2015) - [j17]Shuai Yuan, H. Richard Johnston, Guosheng Zhang, Yun Li, Yi-Juan Hu, Zhaohui S. Qin:
One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies. PLoS Comput. Biol. 11(8) (2015) - 2013
- [j16]Hyungwon Choi, Damian Fermin, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin:
Sparsely correlated hidden Markov models with application to genome-wide location studies. Bioinform. 29(5): 533-541 (2013) - [j15]Zuoshuang Xiang, Tingting Qin, Zhaohui S. Qin, Yongqun He:
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks. BMC Syst. Biol. 7(S-3): S9 (2013) - [j14]Ming Hu, Ke Deng, Zhaohui S. Qin, Jesse R. Dixon, Siddarth Selvaraj, Jennifer Fang, Bing Ren, Jun S. Liu:
Bayesian Inference of Spatial Organizations of Chromosomes. PLoS Comput. Biol. 9(1) (2013) - [j13]Ming Hu, Ke Deng, Zhaohui S. Qin, Jun S. Liu:
Understanding spatial organizations of chromosomes via statistical analysis of Hi-C data. Quant. Biol. 1(2): 156-174 (2013) - 2012
- [j12]Ming Hu, Yu Zhu, Jeremy M. G. Taylor, Jun S. Liu, Zhaohui S. Qin:
Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq. Bioinform. 28(1): 63-68 (2012) - [j11]Ming Hu, Ke Deng, Siddarth Selvaraj, Zhaohui S. Qin, Bing Ren, Jun S. Liu:
HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinform. 28(23): 3131-3133 (2012) - [c5]Shuai Yuan, Zhaohui S. Qin:
Read-mapping using personalized diploid reference genome for RNA sequencing data reduced bias for detecting allele-specific expression. BIBM Workshops 2012: 718-724 - 2010
- [j10]Zhaohui S. Qin, Jianjun Yu, Jincheng Shen, Christopher A. Maher, Ming Hu, Shanker Kalyana-Sundaram, Jindan Yu, Arul M. Chinnaiyan:
HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data. BMC Bioinform. 11: 369 (2010) - [j9]Hyungwon Choi, Zhaohui S. Qin, Debashis Ghosh:
A Double-Layered Mixture Model for the Joint Analysis of DNA Copy Number and Gene Expression Data. J. Comput. Biol. 17(2): 121-137 (2010)
2000 – 2009
- 2009
- [j8]Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin:
Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. Bioinform. 25(14): 1715-1721 (2009) - 2008
- [j7]Zhaohui S. Qin:
Data Analysis and Graphics Using R: An Example-Based Approach, Second Edition.: John Maindonald and John Braun. Briefings Bioinform. 9(3): 258-259 (2008) - 2007
- [j6]Zuoshuang Xiang, Zhaohui S. Qin, Yongqun He:
CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering. Bioinform. 23(14): 1843-1845 (2007) - 2006
- [j5]Zhaohui S. Qin, Shyam Gopalakrishnan, Gonçalo R. Abecasis:
An efficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria. Bioinform. 22(2): 220-225 (2006) - [j4]Zhaohui S. Qin:
Clustering microarray gene expression data using weighted Chinese restaurant process. Bioinform. 22(16): 1988-1997 (2006) - [c4]Shyam Gopalakrishnan, Zhaohui S. Qin:
TagSNP Selection Based on Pairwise LD Criteria and Power Analysis in Association Studies. Pacific Symposium on Biocomputing 2006: 511-522 - 2005
- [j3]Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun:
HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinform. 21(1): 131-134 (2005) - [j2]Dongxiao Zhu, Zhaohui S. Qin:
Structural comparison of metabolic networks in selected single cell organisms. BMC Bioinform. 6: 8 (2005) - [j1]Dongxiao Zhu, Alfred O. Hero III, Zhaohui S. Qin, Anand Swaroop:
High Throughput Screening of Co-Expressed Gene Pairs with Controlled False Discovery Rate (FDR) and Minimum Acceptable Strength (MAS). J. Comput. Biol. 12(7): 1029-1045 (2005) - 2003
- [c3]Xin Lu, Wen Zhang, Zhaohui S. Qin, Jun S. Liu:
Statistical Resynchronization and Detection of Periodic Transcripts. CSB 2003: 394-395 - 2002
- [c2]Tianhua Niu, Xin Lu, Hosung Kang, Zhaohui S. Qin, Jun S. Liu:
Haplotype Inference and Its Application in Linkage Disequilibrium Mapping. Computational Methods for SNPs and Haplotype Inference 2002: 48-61 - [c1]Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun:
Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference 2002: 96-112
Coauthor Index
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last updated on 2024-12-02 22:28 CET by the dblp team
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