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Hsueh-Fen Juan
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2020 – today
- 2023
- [j19]Yueh-Hua Tu, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
Context-dependent gene regulatory network reveals regulation dynamics and cell trajectories using unspliced transcripts. Briefings Bioinform. 24(2) (2023) - [j18]Kai-Pu Chen, Chia-Lang Hsu, Yen-Jen Oyang, Hsuan-Cheng Huang
, Hsueh-Fen Juan
:
BIC: a database for the transcriptional landscape of bacteria in cancer. Nucleic Acids Res. 51(D1): 1205-1211 (2023) - 2022
- [j17]Kuei-Yueh Ko
, Cho-Yi Chen
, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis. Bioinform. 38(3): 763-769 (2022) - [j16]Peng-Hsuan Li
, Ting-Fu Chen, Jheng-Ying Yu, Shang-Hung Shih, Chan-Hung Su, Yin-Hung Lin, Huai-Kuang Tsai
, Hsueh-Fen Juan
, Chien-Yu Chen
, Jia-Hsin Huang
:
pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature. Nucleic Acids Res. 50(W1): 616-622 (2022) - 2021
- [j15]Ting-Fu Chen, Yu-Chuan Chang, Yi Hsiao
, Ko-Han Lee, Yu-Chun Hsiao, Yu-Hsiang Lin, Yi-Chin Ethan Tu, Hsuan-Cheng Huang
, Chien-Yu Chen
, Hsueh-Fen Juan
:
DockCoV2: a drug database against SARS-CoV-2. Nucleic Acids Res. 49(Database-Issue): D1152-D1159 (2021)
2010 – 2019
- 2017
- [j14]Chia-Lang Hsu
, Jiankai Wang, Pei-Chun Lu, Hsuan-Cheng Huang
, Hsueh-Fen Juan:
DynaPho: a web platform for inferring the dynamics of time-series phosphoproteomics. Bioinform. 33(22): 3664-3666 (2017) - 2015
- [j13]Li-Ling Lin
, Hsuan-Cheng Huang
, Hsueh-Fen Juan
:
Circadian systems biology in Metazoa. Briefings Bioinform. 16(6): 1008-1024 (2015) - 2014
- [j12]Ken-Chi Yang, Chia-Lang Hsu
, Chen-Ching Lin, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
Mirin: identifying microRNA regulatory modules in protein-protein interaction networks. Bioinform. 30(17): 2527-2528 (2014) - 2013
- [j11]Szu-Chin Fu, Hsuan-Cheng Huang
, Paul Horton, Hsueh-Fen Juan
:
ValidNESs: a database of validated leucine-rich nuclear export signals. Nucleic Acids Res. 41(Database-Issue): 338-343 (2013) - 2012
- [j10]Cho-Yi Chen
, Shui-Tein Chen, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
Lengthening of 3′UTR increases with morphological complexity in animal evolution. Bioinform. 28(24): 3178-3181 (2012) - [j9]Chen-Ching Lin, Ya-Jen Chen, Cho-Yi Chen
, Yen-Jen Oyang, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
Crosstalk between transcription factors and microRNAs in human protein interaction network. BMC Syst. Biol. 6: 18 (2012) - 2011
- [j8]Cho-Yi Chen
, Shui-Tein Chen, Chiou-Shann Fuh
, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network. BMC Bioinform. 12(S-1): S41 (2011) - [j7]Chien-Wei Tseng, Chen-Ching Lin, Chiung-Nien Chen
, Hsuan-Cheng Huang
, Hsueh-Fen Juan
:
Integrative network analysis reveals active microRNAs and their functions in gastric cancer. BMC Syst. Biol. 5: 99 (2011) - 2010
- [j6]Chen-Ching Lin, Jen-Tsung Hsiang
, Chia-Yi Wu
, Yen-Jen Oyang, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy. BMC Syst. Biol. 4: 138 (2010)
2000 – 2009
- 2008
- [j5]Yu-Ching Fang, Hsuan-Cheng Huang
, Hsueh-Fen Juan
:
MeInfoText: associated gene methylation and cancer information from text mining. BMC Bioinform. 9 (2008) - 2006
- [j4]Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan
, Hsien-Da Huang, Li-Cheng Wu, Meng-Feng Tsai, Hsuan-Cheng Huang
:
An agent-based system to discover protein-protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints. J. Comput. Chem. 27(9): 1020-1032 (2006) - 2004
- [j3]Chien-Yu Chen
, Yen-Jen Oyang, Hsueh-Fen Juan
:
Incremental generation of summarized clustering hierarchy for protein family analysis. Bioinform. 20(16): 2586-2596 (2004) - [j2]Chia-Chin Wu, Hsuan-Cheng Huang
, Hsueh-Fen Juan
, Shui-Tein Chen:
GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data. Bioinform. 20(18): 3691-3693 (2004) - [j1]Darby Tien-Hao Chang, Chien-Yu Chen
, Wen-Chin Chung, Yen-Jen Oyang, Hsueh-Fen Juan
, Hsuan-Cheng Huang
:
ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures. Nucleic Acids Res. 32(Web-Server-Issue): 76-82 (2004) - [c2]Darby Tien-Hao Chang, Chien-Yu Chen, Yen-Jen Oyang, Hsueh-Fen Juan, Hsuan-Cheng Huang:
An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures. BIBE 2004: 427-433 - 2003
- [c1]Chien-Yu Chen
, Hsueh-Fen Juan
, Po-Jen Hsiao, Shui-Tein Chen, Hsiang-Wen Tseng, Yen-Jen Oyang:
Design of an incremental clustering package for protein function and family analysis. ISMSE 2003: 288-296
Coauthor Index
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