default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDAlexander Schönhuth
Person information
- affiliation: Centrum Wiskunde & Informatica (CWI), Amsterdam, The Netherlands
- affiliation: University of Bielefeld, Faculty of Technology, Germany
SPARQL queries 
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
[j33]Xiao Luo, Xiongbin Kang, Alexander Schönhuth
:
Predicting the prevalence of complex genetic diseases from individual genotype profiles using capsule networks. Nat. Mac. Intell. 5(2): 114-125 (2023)- 2022
- [j32]Sumanta Ray, Snehalika Lall, Anirban Mukhopadhyay, Sanghamitra Bandyopadhyay, Alexander Schönhuth:
Deep variational graph autoencoders for novel host-directed therapy options against COVID-19. Artif. Intell. Medicine 134: 102418 (2022) - 2021
- [j31]Marleen Balvert, Xiao Luo, Ernestina Hauptfeld, Alexander Schönhuth, Bas E. Dutilh:
OGRE: Overlap Graph-based metagenomic Read clustEring. Bioinform. 37(7): 905-912 (2021) - 2020
- [c15]Jasmijn A. Baaijens, Leen Stougie, Alexander Schönhuth:
Strain-Aware Assembly of Genomes from Mixed Samples Using Flow Variation Graphs. RECOMB 2020: 221-222
2010 – 2019
- 2019
- [j30]Bojian Yin, Marleen Balvert, Rick A. A. van der Spek, Bas E. Dutilh, Sander M. Bohté, Jan Veldink, Alexander Schönhuth:
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype. Bioinform. 35(14): i538-i547 (2019) - [j29]Jasmijn A. Baaijens, Alexander Schönhuth:
Overlap graph-based generation of haplotigs for diploids and polyploids. Bioinform. 35(21): 4281-4289 (2019) - [j28]Jasmijn A. Baaijens, Bastiaan Van der Roest, Johannes Köster, Leen Stougie, Alexander Schönhuth:
Full-length de novo viral quasispecies assembly through variation graph construction. Bioinform. 35(24): 5086-5094 (2019) - [j27]Alejandro Lopez Rincon, Marlet Martínez-Archundia, Gustavo U. Martinez-Ruiz, Alexander Schönhuth, Alberto Paolo Tonda:
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. BMC Bioinform. 20(1): 480:1-480:17 (2019) - [i18]Marleen Balvert, Georgios Patoulidis, Andrew Patti, Timo M. Deist, Christine Eyler, Bas E. Dutilh, Alexander Schönhuth, David Craft:
A Drug Recommendation System (Dr.S) for cancer cell lines. CoRR abs/1912.11548 (2019) - [i17]Marleen Balvert, Alexander Schönhuth:
Artificial Intelligence: Understanding Diseases that People Cannot Understand? ERCIM News 2019(118) (2019) - [i16]Alexander Schönhuth, Leen Stougie:
The Genetic Diversity of Viruses on a Graphical Map: Discovery of Resistant and Virulent Strains. ERCIM News 2019(118) (2019) - [i15]David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth:
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7: e27885 (2019) - 2018
- [c14]Rayan Chikhi, Alexander Schönhuth:
Dualities in Tree Representations. CPM 2018: 18:1-18:12 - [c13]Marleen Balvert, Alexander Schönhuth, Bas E. Dutilh:
Metagenomic read clustering based on overlap graphs. ICCABS 2018: 1 - [c12]Bojian Yin, Marleen Balvert, Davide Zambrano, Alexander Schönhuth, Sander M. Bohté:
An image representation based convolutional network for DNA classification. ICLR (Poster) 2018 - [i14]Rayan Chikhi, Alexander Schönhuth:
Dualities in Tree Representations. CoRR abs/1804.04263 (2018) - [i13]Bojian Yin, Marleen Balvert, Davide Zambrano, Alexander Schönhuth, Sander M. Bohté:
An image representation based convolutional network for DNA classification. CoRR abs/1806.04931 (2018) - 2017
- [j26]Jana Ebler, Alexander Schönhuth, Tobias Marschall:
Genotyping inversions and tandem duplications. Bioinform. 33(24): 4015-4023 (2017) - [j25]Johannes Dröge, Alexander Schönhuth, Alice C. McHardy:
A probabilistic model to recover individual genomes from metagenomes. PeerJ Comput. Sci. 3: e117 (2017) - 2016
- [j24]I. Gregor, Alexander Schönhuth, Alice Carolyn McHardy:
Snowball: strain aware gene assembly of metagenomes. Bioinform. 32(17): 649-657 (2016) - [i12]Ulrich Faigle, Alexander Schönhuth:
On Hidden States in Quantum Random Walks. CoRR abs/1601.02882 (2016) - [i11]Alexander Schönhuth, Tobias Marschall:
Eliminating Blind Spots in Genetic Variant Discovery. ERCIM News 2016(104) (2016) - [i10]Johannes Dröge, Alexander Schönhuth, Alice Carolyn McHardy:
A probabilistic model to recover individual genomes from metagenomes. PeerJ Prepr. 4: e2626 (2016) - 2015
- [j23]Roland Wittler, Tobias Marschall, Alexander Schönhuth, Veli Mäkinen:
Repeat- and error-aware comparison of deletions. Bioinform. 31(18): 2947-2954 (2015) - [j22]Robin Cijvat, Stefan Manegold, Martin L. Kersten, Gunnar W. Klau, Alexander Schönhuth, Tobias Marschall, Ying Zhang:
Genome sequence analysis with MonetDB - A case study on Ebola virus diversity. Datenbank-Spektrum 15(3): 185-191 (2015) - [j21]Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth:
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads. J. Comput. Biol. 22(6): 498-509 (2015) - [c11]Robin Cijvat, Stefan Manegold, Martin L. Kersten, Gunnar W. Klau, Alexander Schönhuth, Tobias Marschall, Ying Zhang:
Genome sequence analysis with monetdb: a case study on ebola virus diversity. BTW Workshops 2015: 143-150 - [i9]Thomas Bellitto, Tobias Marschall, Alexander Schönhuth, Gunnar W. Klau:
Next generation cluster editing. PeerJ Prepr. 3: e1301 (2015) - 2014
- [j20]Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel:
Viral Quasispecies Assembly via Maximal Clique Enumeration. PLoS Comput. Biol. 10(3) (2014) - [c10]Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth:
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads. RECOMB 2014: 237-249 - [c9]Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel:
Viral Quasispecies Assembly via Maximal Clique Enumeration. RECOMB 2014: 309-310 - 2013
- [j19]Tobias Marschall, Iman Hajirasouliha, Alexander Schönhuth:
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels. Bioinform. 29(24): 3143-3150 (2013) - [j18]Mohammed El-Kebir, Tobias Marschall, Inken Wohlers, Murray Patterson, Jaap Heringa, Alexander Schönhuth, Gunnar W. Klau:
Mapping proteins in the presence of paralogs using units of coevolution. BMC Bioinform. 14(S-15): S18 (2013) - [j17]Manuel Allhoff, Alexander Schönhuth, Marcel Martin, Ivan G. Costa, Sven Rahmann, Tobias Marschall:
Discovering motifs that induce sequencing errors. BMC Bioinform. 14(S-5): S1 (2013) - [i8]Ulrich Faigle, Alexander Schönhuth:
Observation and evolution of finite-dimensional Markov systems. CTW 2013: 93-97 - [i7]Thomas Bellitto, Tobias Marschall, Alexander Schönhuth, Gunnar W. Klau:
Next Generation Cluster Editing. CoRR abs/1310.3353 (2013) - 2012
- [j16]Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp:
Mirroring co-evolving trees in the light of their topologies. Bioinform. 28(9): 1202-1208 (2012) - [j15]Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth:
CLEVER: clique-enumerating variant finder. Bioinform. 28(22): 2875-2882 (2012) - 2011
- [j14]Christoph Hafemeister, Ivan G. Costa, Alexander Schönhuth, Alexander Schliep:
Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions. Bioinform. 27(7): 946-952 (2011) - [j13]Ulrich Faigle, Alexander Schönhuth:
Efficient Tests for Equivalence of Hidden Markov Processes and Quantum Random Walks. IEEE Trans. Inf. Theory 57(3): 1746-1753 (2011) - [c8]Ulrich Faigle, Alexander Schönhuth:
Representations of Power Series over Word Algebras. CTW 2011: 154-157 - [i6]Iman Hajirasouliha, Alexander Schönhuth, David de Juan, Alfonso Valencia, Süleyman Cenk Sahinalp:
Mirroring co-evolving trees in the light of their topologies. CoRR abs/1110.5704 (2011) - 2010
- [j12]Phuong Dao, Recep Colak, Raheleh Salari, Flavia Moser, Elai Davicioni, Alexander Schönhuth, Martin Ester:
Inferring cancer subnetwork markers using density-constrained biclustering. Bioinform. 26(18) (2010) - [j11]Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp:
Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length. J. Comput. Biol. 17(1): 1-20 (2010) - [j10]Meromit Singer, Dario Boffelli, Joseph Dhahbi, Alexander Schönhuth, Gary P. Schroth, David I. K. Martin, Lior Pachter:
MetMap Enables Genome-Scale Methyltyping for Determining Methylation States in Populations. PLoS Comput. Biol. 6(8) (2010) - [c7]Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp:
Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. WABI 2010: 350-361 - [i5]Ulrich Faigle, Alexander Schönhuth:
Discrete Quantum Markov Chains. CoRR abs/1011.1295 (2010)
2000 – 2009
- 2009
- [j9]Ivan G. Costa, Alexander Schönhuth, Christoph Hafemeister, Alexander Schliep:
Constrained mixture estimation for analysis and robust classification of clinical time series. Bioinform. 25(12) (2009) - [j8]Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov:
The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study. J. Comput. Biol. 16(2): 159-167 (2009) - [j7]Alexander Schönhuth, Herbert Jaeger:
Characterization of ergodic hidden Markov sources. IEEE Trans. Inf. Theory 55(5): 2107-2118 (2009) - [j6]Alexander Schönhuth:
On analytic properties of entropy rate. IEEE Trans. Inf. Theory 55(5): 2119-2127 (2009) - [c6]Recep Colak, Fereydoun Hormozdiari, Flavia Moser, Alexander Schönhuth, J. Holman, Martin Ester, Süleyman Cenk Sahinalp:
Dense Graphlet Statistics of Protein Interaction and Random Networks. Pacific Symposium on Biocomputing 2009: 178-189 - [c5]Phuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester:
Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks. WABI 2009: 37-48 - 2008
- [c4]Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp:
The Relation between Indel Length and Functional Divergence: A Formal Study. WABI 2008: 330-341 - [i4]Alexander Schönhuth:
On analytic properties of entropy rate of discrete random sources. CoRR abs/0804.2469 (2008) - [i3]Alexander Schönhuth:
The ergodic decomposition of asymptotically mean stationary random sources. CoRR abs/0804.2487 (2008) - [i2]Alexander Schönhuth:
A simple and efficient solution of the identifiability problem for hidden Markov sources. CoRR abs/0808.2833 (2008) - 2007
- [j5]Ulrich Faigle, Alexander Schönhuth:
Asymptotic Mean Stationarity of Sources With Finite Evolution Dimension. IEEE Trans. Inf. Theory 53(7): 2342-2348 (2007) - 2006
- [j4]Ulrich Faigle, Alexander Schönhuth:
Quantum Predictor Models. Electron. Notes Discret. Math. 25: 149-155 (2006) - 2005
- [j3]Markus Leber, Lars Kaderali, Alexander Schönhuth, Rainer Schrader:
A fractional programming approach to efficient DNA melting temperature calculation. Bioinform. 21(10): 2375-2382 (2005) - [j2]Ivan G. Costa, Alexander Schönhuth, Alexander Schliep:
The Graphical Query Language: a tool for analysis of gene expression time-courses. Bioinform. 21(10): 2544-2545 (2005) - [j1]Alexander Schliep, Ivan G. Costa, Christine Steinhoff, Alexander Schönhuth:
Analyzing Gene Expression Time-Courses. IEEE ACM Trans. Comput. Biol. Bioinform. 2(3): 179-193 (2005) - [i1]Ulrich Faigle, Alexander Schönhuth:
Note on Negative Probabilities and Observable Processes. Algorithms for Optimization with Incomplete Information 2005 - 2004
- [c3]Alexander Schliep, Christine Steinhoff, Alexander Schönhuth:
Robust inference of groups in gene expression time-courses using mixtures of HMMs. ISMB/ECCB (Supplement of Bioinformatics) 2004: 283-289 - 2003
- [c2]Alexander Schliep, Alexander Schönhuth, Christine Steinhoff:
Using hidden Markov models to analyze gene expression time course data. ISMB (Supplement of Bioinformatics) 2003: 255-263 - 2002
- [c1]P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schönhuth, Dietmar Schomburg, Rainer Schrader:
ProClust: improved clustering of protein sequences with an extended graph-based approach. ECCB 2002: 182-191
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-05-08 21:47 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
