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ORCIDJungwei Fan 0001
Person information
- affiliation: Mayo Clinic, Department of Artificial Intelligence and Informatics, Division of Digital Health Sciences, Rochester, MN, USA
Other persons with the same name
- Jungwei Fan (aka: Jung-Wei Fan) — disambiguation page
Other persons with a similar name
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2020 – today
- 2024
[j13]Yang Ren, Yuqi Wu, Jungwei W. Fan
, Aditya Khurana, Sunyang Fu, Dezhi Wu, Hongfang Liu, Ming Huang:
Automatic uncovering of patient primary concerns in portal messages using a fusion framework of pretrained language models. J. Am. Medical Informatics Assoc. 31(8): 1714-1724 (2024)- [j12]Sunyang Fu, Heling Jia, Maria Vassilaki, Vipina Kuttichi Keloth, Yifang Dang, Yujia Zhou, Muskan Garg, Ronald C. Petersen, Jennifer St Sauver, Sungrim Moon, Liwei Wang, Andrew Wen, Fang Li, Hua Xu, Cui Tao, Jungwei Fan, Hongfang Liu, Sunghwan Sohn:
FedFSA: Hybrid and federated framework for functional status ascertainment across institutions. J. Biomed. Informatics 152: 104623 (2024) - [i5]Ricardo Loor-Torres, Yuqi Wu, Esteban Cabezas, Mariana Borras, David Toro-Tobon, Mayra Durán, Misk Al Zahidy, Maria Mateo Chavez, Cristian Soto Jacome, Jungwei W. Fan, Naykky M. Singh Ospina, Yonghui Wu, Juan P. Brito:
Use of natural language processing to extract and classify papillary thyroid cancer features from surgical pathology reports. CoRR abs/2406.00015 (2024) - [i4]Qiuhao Lu, Rui Li, Elham Sagheb, Andrew Wen, Jinlian Wang, Liwei Wang, Jungwei W. Fan, Hongfang Liu:
Explainable Diagnosis Prediction through Neuro-Symbolic Integration. CoRR abs/2410.01855 (2024) - [i3]Betina Idnay, Zihan Xu, William G. Adams, Mohammad Adibuzzaman, Nicholas R. Anderson, Neil Bahroos, Douglas S. Bell, Cody Bumgardner, Thomas R. Campion Jr., Victor M. Castro, James J. Cimino, I. Glenn Cohen, David A. Dorr, Peter L. Elkin, Jungwei W. Fan, Todd Ferris, David J. Foran, David A. Hanauer, Mike Hogarth, Kun Huang, Jayashree Kalpathy-Cramer, Manoj Kandpal, Niranjan S. Karnik, Avnish Katoch, Albert M. Lai, Christophe G. Lambert, Lang Li, Christopher Lindsell, Jinze Liu, Zhiyong Lu, Yuan Luo, Peter McGarvey, Eneida A. Mendonça, Parsa Mirhaji, Shawn N. Murphy, John D. Osborne, Ioannis Ch. Paschalidis, Paul A. Harris, Fred W. Prior, Nicholas J. Shaheen, Nawar Shara, Ida Sim, Umberto Tachinardi, Lemuel R. Waitman, Rosalind J. Wright, Adrian H. Zai, Kai Zheng, Sandra Soo-Jin Lee, Bradley A. Malin, Karthik Natarajan, W. Nicholson Price, Rui Zhang, Yiye Zhang, Hua Xu, Jiang Bian, Chunhua Weng, Yifan Peng:
Environment Scan of Generative AI Infrastructure for Clinical and Translational Science. CoRR abs/2410.12793 (2024) - 2023
- [j11]Jungwei Fan, Wanjing Wang, Ming Huang, Hongfang Liu, W. M. Hooten:
Retrospective content analysis of consumer product reviews related to chronic pain. Frontiers Digit. Health 5 (2023) - [c24]Yang Ren, Dezhi Wu, Aditya Khurana, George M. Mastorakos, Sunyang Fu, Nansu Zong, Jungwei Fan, Hongfang Liu, Ming Huang:
Classification of Patient Portal Messages with BERT-based Language Models. ICHI 2023: 176-182 - 2022
- [j10]Sunyang Fu, Maria Vassilaki, Omar A. Ibrahim, Ronald C. Petersen, Sandeep R. Pagali, Jennifer St Sauver, Sungrim Moon, Liwei Wang, Jungwei Fan, Hongfang Liu, Sunghwan Sohn:
Quality assessment of functional status documentation in EHRs across different healthcare institutions. Frontiers Digit. Health 4 (2022) - [c23]Sunyang Fu, Maria Vassilaki, Omar A. Ibrahim, Ronald C. Petersen, Jennifer St. Sauver, Liwei Wang, Jungwei Fan, Hongfang Liu, Sunghwan Sohn:
Quality Assessment of Functional Status Documentation in EHR Across Institutions. AMIA 2022 - [c22]Sungrim Moon, Huan He, Jungwei Fan:
Effects of Information Masking in the Task-Specific Finetuning of a Transformers-Based Clinical Question-Answering Framework. ICHI 2022: 36-41 - [c21]Nan Wang, Ming Huang, Jungwei Fan:
Mining Transportation Issues from Patient Portal Messages. ICHI 2022: 532-533 - [i2]Sungrim Moon, Huan He, Hongfang Liu, Jungwei Fan:
RxWhyQA: a clinical question-answering dataset with the challenge of multi-answer questions. CoRR abs/2201.02517 (2022) - 2021
- [j9]Andrew Wen, Liwei Wang, Huan He, Sijia Liu, Sunyang Fu, Sunghwan Sohn, Jacob A. Kugel, Vinod C. Kaggal, Ming Huang, Yanshan Wang, Feichen Shen, Jungwei Fan, Hongfang Liu:
An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses. J. Biomed. Informatics 113: 103660 (2021) - [c20]Ming Huang, Aditya Khurana, George M. Mastorakos, Andrew Wen, Huan He, Liwei Wang, Sijia Liu, Yanshan Wang, Julie E. Prigge, Brian Costello, Nilay D. Shah, Henry Ting, Christi A. Patten, Jungwei Fan, Hongfang Liu:
Patient Asynchronous Response to Coronavirus Disease 2019 (COVID-19): A Retrospective Analysis of Patient Portal Messages. AMIA 2021 - [c19]Ming Huang, Andrew Wen, Huan He, Liwei Wang, Sijia Liu, Yanshan Wang, Nansu Zong, Yue Yu, Julie E. Prigge, Brian Costello, Nilay D. Shah, Henry Ting, Chyke Doubeni, Jungwei Fan, Hongfang Liu, Christi A. Patten:
Disparity analysis of patient portal messaging use for COVID-19 in urban versus rural locality. AMIA 2021 - [c18]Sungrim Moon, Huan He, Jungwei Fan:
Development of a Clinical Question-Answering Corpus with Realistic Multi-Answer Challenges. AMIA 2021 - [c17]Sunghwan Sohn, Sungrim Moon, Larry J. Prokop, Victor M. Montori, Jungwei Fan:
A Scoping Review of Informatics Research for Clinical Practice Variation. AMIA 2021 - [c16]Sunyang Fu, Andrew Wen, Sandeep R. Pagali, Nansu Zong, Jennifer St Sauver, Sunghwan Sohn, Jungwei Fan, Hongfang Liu:
The Implication of Latent Information Quality to the Reproducibility of Secondary Use of Electronic Health Records. MedInfo 2021: 173-177 - [c15]Ming Huang, Aditya Khurana, George M. Mastorakos, Jungwei Fan:
Identification of Transportation Barriers in Patient Portal Messages via Deep Semantic Embeddings and Clustering. MedInfo 2021: 794-798 - 2020
- [j8]Ling Zheng, Zhe He, Duo Helen Wei, Vipina Kuttichi Keloth, Jungwei Fan, Luke Lindemann, Xinxin Zhu, James J. Cimino, Yehoshua Perl:
A review of auditing techniques for the Unified Medical Language System. J. Am. Medical Informatics Assoc. 27(10): 1625-1638 (2020) - [c14]Sungrim Moon, Jungwei Fan:
How You Ask Matters: The Effect of Paraphrastic Questions to BERT Performance on a Clinical SQuAD Dataset. ClinicalNLP@EMNLP 2020: 111-116 - [c13]Ming Huang, Jungwei Fan:
Deep Semantic Embeddings and Clustering to Facilitate Identification of Transportation Barriers in Patient Portal Messages. AMIA 2020 - [c12]Luke A. Carlson, Molly M. Jeffery, Sunyang Fu, Huan He, Rozalina G. McCoy, Yanshan Wang, W. M. Hooten, Jennifer L. St. Sauver, Hongfang Liu, Jungwei Fan:
Annotating Chronic Pain Episodes in EHR Text: Guideline Development and Corpus Analysis. AMIA 2020 - [c11]Luke A. Carlson, Jennifer St. Sauver, Sunyang Fu, Ahmad P. Tafti, Jungwei Fan, Molly M. Jeffery, Rozalina G. McCoy, Hongfang Liu, Yanshan Wang:
Big Impact from Small Data: Unsupervised Machine Learning Approaches for Chronic Pain Patient Subgrouping. AMIA 2020 - [c10]Mohamed Y. Elwazir, Andrew Wen, Sungrim Moon, Jungwei Fan:
A Perturbation Approach to Assessing BERT Robustness for Different Linguistic Aspects in Medical Question-Answering. AMIA 2020 - [c9]Andrew Wen, Feichen Shen, Sungrim Moon, Hongfang Liu, Jungwei Fan:
A Deep Profiling and Visualization Framework to Audit Clinical Assessment Variation. CBMS 2020: 546-551
2010 – 2019
- 2019
- [j7]Andrew Wen, Sunyang Fu, Sungrim Moon, Mohamed El Wazir, Andrew Rosenbaum, Vinod C. Kaggal, Sijia Liu, Sunghwan Sohn, Hongfang Liu, Jungwei Fan:
Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation. npj Digit. Medicine 2 (2019) - [c8]Andrew Wen, Yanshan Wang, Vinod C. Kaggal, Sijia Liu, Hongfang Liu, Jungwei Fan:
Enhancing Clinical Information Retrieval through Context-Aware Queries and Indices. IEEE BigData 2019: 2800-2807 - [i1]Andrew Wen, Mohamed Y. Elwazir, Sungrim Moon, Jungwei Fan:
Adapting and evaluating a deep learning language model for clinical why-question answering. CoRR abs/1911.05604 (2019) - 2015
- [j6]Manabu Torii, Jungwei Fan, Weili Yang, Theodore Lee, Matthew T. Wiley, Daniel S. Zisook, Yang Huang:
Risk factor detection for heart disease by applying text analytics in electronic medical records. J. Biomed. Informatics 58: S164-S170 (2015) - [j5]Min Jiang, Yang Huang, Jungwei Fan, Buzhou Tang, Joshua C. Denny, Hua Xu:
Parsing clinical text: how good are the state-of-the-art parsers? BMC Medical Informatics Decis. Mak. 15-S(S-1): S2 (2015) - [c7]Manabu Torii, Jungwei Fan, Daniel S. Zisook:
Finding Difficult-to-Disambiguate Words: Towards an Efficient Workflow to Implement Word Sense Disambiguation. ICHI 2015: 448 - 2014
- [c6]Yang Huang, Jungwei Fan, Elly W. Yang, Hua Xu:
Building a Treebank of hospital discharge summaries. AMIA 2014 - [c5]Min Jiang, Yang Huang, Jungwei Fan, Buzhou Tang, Joshua C. Denny, Hua Xu:
Parsing Clinical Text: How Good are the State-of-the-Art Parsers? DTMBIO@CIKM 2014: 1 - 2013
- [j4]Jungwei Fan, Elly W. Yang, Min Jiang, Rashmi Prasad, Richard M. Loomis, Daniel Zisook, Joshua C. Denny, Hua Xu, Yang Huang:
Research and applications: Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences. J. Am. Medical Informatics Assoc. 20(6): 1168-1177 (2013) - [c4]Jungwei Fan, Navdeep Sood, Yang Huang:
Disorder Concept Identification from Clinical Notes: an Experience with the ShARe/CLEF 2013 Challenge. CLEF (Working Notes) 2013 - 2011
- [c3]Hua Xu, Samir AbdelRahman, Min Jiang, Jungwei Fan, Yang Huang:
An initial study of full parsing of clinical text using the Stanford Parser. BIBM Workshops 2011: 607-614
2000 – 2009
- 2009
- [j3]Xinxin Zhu, Jungwei Fan, David M. Baorto, Chunhua Weng, James J. Cimino:
A review of auditing methods applied to the content of controlled biomedical terminologies. J. Biomed. Informatics 42(3): 413-425 (2009) - 2007
- [j2]Hua Xu, Jungwei Fan, George Hripcsak, Eneida A. Mendonça, Marianthi Markatou, Carol Friedman:
Gene symbol disambiguation using knowledge-based profiles. Bioinform. 23(8): 1015-1022 (2007) - [j1]Jungwei Fan, Hua Xu, Carol Friedman:
Using contextual and lexical features to restructure and validate the classification of biomedical concepts. BMC Bioinform. 8 (2007) - [c2]Hua Xu, Jungwei Fan, Carol Friedman:
Combining multiple evidence for gene symbol disambiguation. BioNLP@ACL 2007: 41-48 - [c1]Jungwei Fan, Hua Xu, Carol Friedman:
Using Distributional Analysis to Semantically Classify UMLS Concepts. MedInfo 2007: 519-523
Coauthor Index
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