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2020 – today
- 2024
[j41]Wenjie You, Zijiang Yang
, Guoli Ji:
PLS-based gene subset augmentation and tumor-specific gene identification. Comput. Biol. Medicine 174: 108434 (2024)- [c22]Guangzao Huang, Zijiang Yang, Grace Liu, Guoli Ji:
Introducing Prediction Concept into Data Envelopment Analysis Using Classifier in Economic Forecast. SAI (2) 2024: 118-127 - 2023
- [j40]Junjie Zhang, Guoli Ji, Xilin Gao, Jinting Guan:
Single-nucleus gene and gene set expression-based similarity network fusion identifies autism molecular subtypes. BMC Bioinform. 24(1): 142 (2023) - [j39]Guoli Ji, Qi Tang, Sheng Zhu, Junyi Zhu, Pengchao Ye, Shuting Xia, Xiaohui Wu:
stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies. Genom. Proteom. Bioinform. 21(3): 601-618 (2023) - 2022
- [j38]Qingyang Yin, Yang Wang, Jinting Guan, Guoli Ji:
scIAE: an integrative autoencoder-based ensemble classification framework for single-cell RNA-seq data. Briefings Bioinform. 23(1) (2022) - [j37]Sheng Zhu, Qiwei Lian, Wenbin Ye, Wei Qin, Zhe Wu, Guoli Ji, Xiaohui Wu:
scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution. Nucleic Acids Res. 50(D1): 365-370 (2022) - 2021
- [j36]Xiaohui Wu, Tao Liu, Congting Ye, Wenbin Ye, Guoli Ji:
scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data. Briefings Bioinform. 22(4) (2021) - [j35]Congting Ye, Danhui Zhao, Wenbin Ye, Xiaohui Wu, Guoli Ji, Qingshun Quinn Li, Juncheng Lin:
QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering. Briefings Bioinform. 22(6) (2021) - [j34]Wenbin Ye, Tao Liu, Hongjuan Fu, Congting Ye, Guoli Ji, Xiaohui Wu:
movAPA: modeling and visualization of dynamics of alternative polyadenylation across biological samples. Bioinform. 37(16): 2470-2472 (2021) - [j33]Huoyou Li, Xuesong Xiao, Xiaohui Wu, Lishan Ye, Guoli Ji:
scLINE: A multi-network integration framework based on network embedding for representation of single-cell RNA-seq data. J. Biomed. Informatics 122: 103899 (2021) - [c21]Mengfei Liu, Guoli Ji:
Whole Genome Analysis of Polyadenylation Sites in Long Non-coding RNAs in Oryza Sativa. ICBBT 2021: 55-59 - 2020
- [j32]Moliang Chen, Guoli Ji, Hongjuan Fu, Qianmin Lin, Congting Ye, Wenbin Ye, Yaru Su, Xiaohui Wu:
A survey on identification and quantification of alternative polyadenylation sites from RNA-seq data. Briefings Bioinform. 21(4): 1261-1276 (2020) - [j31]Pengchao Ye, Wenbin Ye, Congting Ye, Shuchao Li, Lishan Ye, Guoli Ji, Xiaohui Wu:
scHinter: imputing dropout events for single-cell RNA-seq data with limited sample size. Bioinform. 36(3): 789-797 (2020) - [j30]Congting Ye, Qian Zhou, Xiaohui Wu, Chen Yu, Guoli Ji, Daniel R. Saban, Qingshun Quinn Li:
scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. Bioinform. 36(4): 1262-1264 (2020) - [c20]Yang Wang, Yiping Lin, Guoli Ji, Jinting Guan:
Gene Screening for Autism Based on Cell-type-specific Predictive Models. BIBM 2020: 2090-2096 - [c19]Xin Wei, Yibo Zhuang, Xiaohui Wu, Guoli Ji:
SCNMLRR: Single Cell Clustering Based on Low-rank Non-negative Matrix Factorization. ICBBS 2020: 30-34 - [c18]Hongjuan Fu, Yibo Zhuang, Xiaohui Wu, Guoli Ji:
A Pipeline to Identify Novel 3' UTRs and Widespread Intergenic Transcription by Combination of Polyadenylation Sites and RNA-seq Data. ICBBS 2020: 126-132
2010 – 2019
- 2019
- [j29]Guoli Ji, Wenbin Ye, Yaru Su, Moliang Chen, Guangzao Huang, Xiaohui Wu:
AStrap: identification of alternative splicing from transcript sequences without a reference genome. Bioinform. 35(15): 2654-2656 (2019) - [j28]Yimin Zheng, Guoli Ji, Zhuo-Yun Nie, Jiangyin Huang:
Research on a reduced order closed-loop identification algorithms based on AIC for process with time delay. Clust. Comput. 22(6): 13247-13260 (2019) - [j27]Mingshun Yuan, Zijiang Yang, Guoli Ji:
Partial maximum correlation information: A new feature selection method for microarray data classification. Neurocomputing 323: 231-243 (2019) - [j26]Wenjie You, Zijiang Yang, Guangbao Guo, Xiu-Feng Wan, Guoli Ji:
Prediction of DNA-binding proteins by interaction fusion feature representation and selective ensemble. Knowl. Based Syst. 163: 598-610 (2019) - [c17]Yiping Lin, Shuchao Li, Guoli Ji, Jinting Guan:
Human brain cell type-specific gene co-expression associated with autism spectrum disorder. BIBM 2019: 2083-2089 - [c16]Wenbing Zhu, Zijiang Yang, Xuesong Xiao, Yuanhaowei Ji, Shuchao Li, Xue Yan, Guoli Ji:
An Improved Bayesian Integrated ICA Approach for Control Loop Diagnosis with Small Sample Size. ICCAD 2019: 1-6 - 2018
- [j25]Jinting Guan, Moliang Chen, Congting Ye, James J. Cai, Guoli Ji:
AEGS: identifying aberrantly expressed gene sets for differential variability analysis. Bioinform. 34(5): 881-883 (2018) - [j24]Congting Ye, Yuqi Long, Guoli Ji, Qingshun Quinn Li, Xiaohui Wu:
APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data. Bioinform. 34(11): 1841-1849 (2018) - [j23]Guoli Ji, Moliang Chen, Wenbin Ye, Sheng Zhu, Congting Ye, Yaru Su, Haonan Peng, Xiaohui Wu:
TSAPA: identification of tissue-specific alternative polyadenylation sites in plants. Bioinform. 34(12): 2123-2125 (2018) - [j22]Mingshun Yuan, Zijiang Yang, Guangzao Huang, Guoli Ji:
A novel feature selection method to predict protein structural class. Comput. Biol. Chem. 76: 118-129 (2018) - 2017
- [j21]Guoli Ji, Qianmin Lin, Yuqi Long, Congting Ye, Wenbin Ye, Xiaohui Wu:
PAcluster: Clustering polyadenylation site data using canonical correlation analysis. J. Bioinform. Comput. Biol. 15(5): 1750018:1-1750018:19 (2017) - [j20]Guangzao Huang, Zijiang Yang, Xiaojing Chen, Guoli Ji:
An innovative one-class least squares support vector machine model based on continuous cognition. Knowl. Based Syst. 123: 217-228 (2017) - [j19]Mingshun Yuan, Zijiang Yang, Guangzao Huang, Guoli Ji:
Feature selection by maximizing correlation information for integrated high-dimensional protein data. Pattern Recognit. Lett. 92: 17-24 (2017) - [j18]Guoli Ji, Pengchao Ye, Yijian Shi, Leiming Yuan, Xiaojing Chen, Mingshun Yuan, Dehua Zhu, Xi Chen, Xinyu Hu, Jing Jiang:
Laser-Induced Breakdown Spectroscopy for Rapid Discrimination of Heavy-Metal-Contaminated Seafood Tegillarca granosa. Sensors 17(11): 2655 (2017) - 2016
- [c15]Wenbing Zhu, Zijiang Yang, Meishuang Tang, Sun Zhou, Bin Yao, Guoli Ji:
Integrating principal component analysis and optimal histogram estimation for Bayesian control loop diagnosis. AIM 2016: 1109-1114 - [c14]Jinting Guan, Meishuang Tang, Guangzao Huang, Wenbing Zhu, Sun Zhou, Guoli Ji:
A new small-world network model for instant messaging chat network. SoSE 2016: 1-5 - 2015
- [j17]Guoli Ji, Jinting Guan, Yong Zeng, Qingshun Quinn Li, Xiaohui Wu:
Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes. Briefings Bioinform. 16(2): 304-313 (2015) - [j16]Guoli Ji, Lei Li, Qingshun Quinn Li, Xiangdong Wu, Jingyi Fu, Gong Chen, Xiaohui Wu:
PASPA: a web server for mRNA poly(A) site predictions in plants and algae. Bioinform. 31(10): 1671-1673 (2015) - [j15]Jinting Guan, Jingyi Fu, Mingcheng Wu, Longteng Chen, Guoli Ji, Qingshun Quinn Li, Xiaohui Wu:
VAAPA: A web platform for visualization and analysis of alternative polyadenylation. Comput. Biol. Medicine 57: 20-25 (2015) - [j14]Kangkang Zhang, Ruben Gonzalez, Biao Huang, Guoli Ji:
Expectation-Maximization Approach to Fault Diagnosis With Missing Data. IEEE Trans. Ind. Electron. 62(2): 1231-1240 (2015) - [c13]Wenbing Zhu, Zixuan Li, Sun Zhou, Guoli Ji:
Bayesian Fault Diagnosis Using Principal Component Analysis Approach with Continuous Evidence. ITITS (1) 2015: 273-283 - [c12]Yaozong Wang, Xiaorong Hu, Sun Zhou, Guoli Ji:
Oscillation Source Detection for Large-Scale Chemical Process with Interpretative Structural Model. ITITS (2) 2015: 441-451 - [c11]Sun Zhou, Zhongyuan Cai, Guoli Ji:
Bayesian Approach to Fault Diagnosis with Ambiguous Historical Modes. ITITS (2) 2015: 473-481 - 2014
- [j13]Wenjie You, Zijiang Yang, Guoli Ji:
Feature selection for high-dimensional multi-category data using PLS-based local recursive feature elimination. Expert Syst. Appl. 41(4): 1463-1475 (2014) - [j12]Yunlong Liu, Zijiang Yang, Guoli Ji:
Solving partially observable problems with inaccurate PSR models. Inf. Sci. 283: 142-152 (2014) - [j11]Wenjie You, Zijiang Yang, Guoli Ji:
PLS-based recursive feature elimination for high-dimensional small sample. Knowl. Based Syst. 55: 15-28 (2014) - 2013
- [j10]Guoli Ji, Jiangyin Huang, Kangkang Zhang, Yucai Zhu, Wei Lin, Tianxiao Ji, Sun Zhou, Bin Yao:
Identification and predictive control for a circulation fluidized bed boiler. Knowl. Based Syst. 45: 62-75 (2013) - 2012
- [j9]Pei Li, Guoli Ji, Min Dong, Emily Schmidt, Douglas Lenox, Liangliang Chen, Qi Liu, Lin Liu, Jie Zhang, Chun Liang:
CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis. Bioinform. 28(18): 2382-2384 (2012) - [j8]Yunlong Gao, Jinyan Pan, Guoli Ji, Zijiang Yang:
A novel two-level nearest neighbor classification algorithm using an adaptive distance metric. Knowl. Based Syst. 26: 103-110 (2012) - [j7]Yunlong Gao, Guoli Ji, Zijiang Yang, Jinyan Pan:
A Dynamic AdaBoost Algorithm With Adaptive Changes of Loss Function. IEEE Trans. Syst. Man Cybern. Part C 42(6): 1828-1841 (2012) - [c10]Xiaohui Wu, Meishuang Tang, Junfeng Yao, Shuiyuan Lin, Zhe Xiang, Guoli Ji:
PATMAP: Polyadenylation Site Identification from Next-Generation Sequencing Data. HAIS (1) 2012: 485-496 - [c9]Guoli Ji, Zhe Xiang, Xiaohui Wu, Shuiyuan Lin, Meishuang Tang, Junfeng Yao:
High-throughput antibody sequence alignment based on GPU computing. SAC 2012: 1417-1418 - 2011
- [j6]Zijiang Yang, Wenjie You, Guoli Ji:
Using partial least squares and support vector machines for bankruptcy prediction. Expert Syst. Appl. 38(7): 8336-8342 (2011) - [j5]Sun Zhou, Guoli Ji, Zijiang Yang, Wei Chen:
Hybrid intelligent control scheme of a polymerization kettle for ACR production. Knowl. Based Syst. 24(7): 1037-1047 (2011) - [j4]Guoli Ji, Zijiang Yang, Wenjie You:
PLS-Based Gene Selection and Identification of Tumor-Specific Genes. IEEE Trans. Syst. Man Cybern. Part C 41(6): 830-841 (2011) - [c8]Guoli Ji, Huanghui Zhang, Xiaohui Wu, Meishuang Tang:
Identification of plant messenger RNA polyadenylation sites using length-variable second order Markov model. SMC 2011: 920-924 - 2010
- [c7]Yunlong Liu, Guoli Ji, Zijiang Yang:
Using Learned PSR Model for Planning under Uncertainty. Canadian AI 2010: 309-314 - [c6]Sun Zhou, Guoli Ji:
Modeling and fuzzy controller design for ACR polymerizing-kettles. ICCA 2010: 1688-1693 - [c5]Guoli Ji, Xiaohui Wu, Qingshun Quinn Li, Jianti Zheng:
Messenger RNA Polyadenylation Site Recognition in Green Alga Chlamydomonas Reinhardtii. ISNN (1) 2010: 17-26 - [c4]Junfeng Yao, Chengpeng Wu, Xiaobiao Xie, Kai Qian, Guoli Ji, Prabir Bhattacharya:
A new method of information decision-making based on D-S evidence theory. SMC 2010: 1804-1811
2000 – 2009
- 2009
- [j3]Chun Liang, Lin Liu, Guoli Ji:
WebGMAP: a web service for mapping and aligning cDNA sequences to genomes. Nucleic Acids Res. 37(Web-Server-Issue): 77-83 (2009) - [c3]Guoli Ji, Xiaohui Wu, Denghui Xing, Qingshun Quinn Li:
PROBER: Segmentation and Differential Analysis Tool for Tiling Microarray Data. BMEI 2009: 1-5 - [c2]Wenjie You, Shanshan Wu, Guoli Ji:
The Application of an Improved Particle Swarm Optimization (PSO) Algorithm in Pairwise Sequence Alignment. CIS (2) 2009: 125-128 - [c1]Guoli Ji, Congting Ye, Zijiang Yang, Zhenya Guo:
A Novel Method for Progressive Multiple Sequence Alignment Based on Lempel-Ziv. ICONIP (1) 2009: 151-158 - 2007
- [j2]Guoli Ji, Jianti Zheng, Yingjia Shen, Xiaohui Wu, Ronghan Jiang, Yun Lin, Johnny C. Loke, Kimberly M. Davis, Greg J. Reese, Qingshun Quinn Li:
Predictive modeling of plant messenger RNA polyadenylation sites. BMC Bioinform. 8 (2007) - [j1]Chun Liang, Gang Wang, Lin Liu, Guoli Ji, Yuansheng Liu, Jinqiao Chen, Jason S. Webb, Greg J. Reese, Jeffrey F. D. Dean:
WebTraceMiner: a web service for processing and mining EST sequence trace files. Nucleic Acids Res. 35(Web-Server-Issue): 137-142 (2007)
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