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ORCIDJeremy L. Warner
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2020 – today
- 2023
[j16]Megan M. Shuey
, William W. Stead, Ida Aka, April L. Barnado, Lisa Bastarache, Elly Brokamp, Meredith Campbell, Robert J. Carroll, Jeffrey A. Goldstein, Adam Lewis, Beth A. Malow, Jonathan D. Mosley, Travis Osterman, Dolly A Padovani-Claudio, Andrea Ramirez, Dan M. Roden, Bryce A Schuler, Edward Siew, Jennifer Sucre, Isaac Thomsen, Rory J. Tinker, Sara Van Driest, Colin Walsh, Jeremy L. Warner, Quinn Stanton Wells, Lee E. Wheless:
Next-generation phenotyping: introducing phecodeX for enhanced discovery research in medical phenomics. Bioinform. 39(10) (2023)- [c30]Travis Zack, Jeremy L. Warner:
Introducing a Comprehensive Score of Systemic Anticancer Treatment Relevance. MedInfo 2023: 464-468 - [i1]Shan Chen, Marco Guevara, Nicolas Ramirez, Arpi Murray, Jeremy L. Warner, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman:
Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy. CoRR abs/2303.13722 (2023) - 2022
- [j15]Elmer V. Bernstam, Jeremy L. Warner, John C. Krauss, Edward P. Ambinder, Wendy S. Rubinstein, George Komatsoulis, Robert S. Miller, James L. Chen:
Quantitating and assessing interoperability between electronic health records. J. Am. Medical Informatics Assoc. 29(5): 753-760 (2022) - [c29]Harry Hochheiser, Sean Finan, Zhou Yuan, John D. Levander, Eric B. Durbin, Isaac Hands, Ramakanth Kavuluru, Jeremy L. Warner, Guergana Savova:
DeepPhe: Natural Language Processing Tools for Cancer Research and Surveillance. AMIA 2022 - [c28]Liwei Wang, Sunyang Fu, Andrew Wen, Xiaoyang Ruan, Huan He, Sijia Liu, Sungrim Moon, Michelle Mai, Irbaz Bin Riaz, Nan Wang, Ping Yang, Hua Xu, Jeremy L. Warner, Hongfang Liu:
Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing. ICHI 2022: 517-518 - 2021
- [j14]Neil S. Zheng, Jeremy L. Warner, Travis J. Osterman, Quinn Stanton Wells, Xiao-Ou Shu, Stephen A. Deppen, Seth J. Karp, Shon Dwyer, QiPing Feng, Nancy J. Cox, Josh F. Peterson, C. Michael Stein, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei:
A retrospective approach to evaluating potential adverse outcomes associated with delay of procedures for cardiovascular and cancer-related diagnoses in the context of COVID-19. J. Biomed. Informatics 113: 103657 (2021) - 2020
- [j13]Nathan D. Seligson, Jeremy L. Warner, William S. Dalton, David Martin, Robert S. Miller, Debra Patt, Kenneth L. Kehl, Matvey B. Palchuk, Gil Alterovitz, Laura K. Wiley, Ming Huang, Feichen Shen, Yanshan Wang, Khoa A. Nguyen, Anthony F. Wong, Funda Meric-Bernstam, Elmer V. Bernstam, James L. Chen:
Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity. J. Am. Medical Informatics Assoc. 27(11): 1808-1812 (2020) - [c27]Danielle S. Bitterman, Timothy A. Miller, David Harris, Chen Lin, Sean Finan, Jeremy L. Warner, Raymond H. Mak, Guergana Savova:
Extracting Relations between Radiotherapy Treatment Details. ClinicalNLP@EMNLP 2020: 194-200
2010 – 2019
- 2019
- [j12]Jeremy L. Warner, Dmitry Dymshyts, Christian G. Reich, Michael J. Gurley, Harry Hochheiser, Zachary H. Moldwin, Rimma Belenkaya, Andrew E. Williams, Peter C. Yang:
HemOnc: A new standard vocabulary for chemotherapy regimen representation in the OMOP common data model. J. Biomed. Informatics 96 (2019) - [c26]Elmer V. Bernstam, Jeremy L. Warner, John C. Krauss, Edward P. Ambinder, Wendy S. Rubinstein, George Komatsoulis, Robert S. Miller, James L. Chen:
Continuum of Interoperability in Oncology EHR Implementations. AMIA 2019 - [c25]Yaa A. Kumah-Crystal, Liz Salmi, Chethan Sarabu, Jeffery Smith, Jeremy L. Warner:
Flipping Clinical Documentation on its Head. AMIA 2019 - [c24]Zachary H. Moldwin, Harry Hochheiser, Jeremy L. Warner:
HemOnc.org: Evaluation of Information Models for Cancer Therapy Representation. AMIA 2019 - [c23]Zhijun Yin, Jeremy L. Warner, Qingxia Chen, Bradley A. Malin:
Patient Messaging Content Associated with Initiating Hormonal Therapy after a Breast Cancer Diagnosis. AMIA 2019 - [c22]Ergin Soysal, Jeremy L. Warner, Jingqi Wang, Min Jiang, Krysten Harvey, Sandeep Kumar Jain, Xiao Dong, Hsing-yi Song, Harish Siddhanamatha, Liwei Wang, Qi Dai, Qingxia Chen, Xianglin Du, Cui Tao, Ping Yang, Joshua Charles Denny, Hongfang Liu, Hua Xu:
Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP. MedInfo 2019: 1041-1045 - 2018
- [j11]Zhijun Yin, Morgan Harrell, Jeremy L. Warner, Qingxia Chen, Daniel Fabbri, Bradley A. Malin:
The therapy is making me sick: how online portal communications between breast cancer patients and physicians indicate medication discontinuation. J. Am. Medical Informatics Assoc. 25(11): 1444-1451 (2018) - [c21]Krysten Harvey, Andrew M. Malty, Samuel M. Rubinstein, Jeremy L. Warner:
connecTPL: A Tool for Connecting Drugs and Publications to their Clinical Trials. AMIA 2018 - [c20]Jeremy L. Warner, Samuel M. Rubinstein, Julie Wu, Emmanuel A. Santillana, Suresh K. Bhavnani:
Exploring Mutational Heterogeneity in the GENIE Tumor Database Using Visual Analytics. AMIA 2018 - [c19]Jeremy L. Warner, Guergana Savova, Noemie Elhadad, Lisa Bastarache, David Gotz:
Computable Longitudinal Patient Trajectories. AMIA 2018 - [c18]Zhijun Yin, Jeremy L. Warner, Bradley A. Malin:
Learning When Communications Between Healthcare Providers Indicate Hormonal Therapy Medication Discontinuation. AMIA 2018 - 2017
- [c17]Suresh K. Bhavnani, Archana Ayyaswami, Tianlong Chen, Jeremy L. Warner:
Identification of Patient Subgroups in Metastatic Breast Cancer Patients Based on Somatic Copy Number Alterations: A Bipartite Network Analysis. AMIA 2017 - [c16]Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu:
Identifying Metastases related Information from Pathology Reports of Lung Cancer Patients. CRI 2017 - [c15]Zhijun Yin, Bradley A. Malin, Jeremy L. Warner, Pei-Yun Sabrina Hsueh, Ching-Hua Chen:
The Power of the Patient Voice: Learning Indicators of Treatment Adherence From An Online Breast Cancer Forum. ICWSM 2017: 337-346 - [c14]Sandeep Kumar Jain, Maryam Rahimian, Robin M. Joyce, Jessica A. Zerillo, Jeremy L. Warner:
Using network graphs to visualize changing documentation styles in an oncology practice before and after opennotes implementation. VAHC 2017: 62-68 - 2016
- [j10]Jeremy L. Warner, Lucy Wang, William Pao, Jeffrey A. Sosman, Ravi V. Atreya, Pam Carney, Mia A. Levy:
CUSTOM-SEQ: a prototype for oncology rapid learning in a comprehensive EHR environment. J. Am. Medical Informatics Assoc. 23(4): 692-700 (2016) - [j9]Jeremy L. Warner, Matthew J. Rioth, Kenneth D. Mandl, Joshua C. Mandel, David A. Kreda, Isaac S. Kohane, Daniel Carbone, Ross Oreto, Lucy Wang, Shilin Zhu, Heming Yao, Gil Alterovitz:
SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. J. Am. Medical Informatics Assoc. 23(4): 701-710 (2016) - [j8]Matthew J. Rioth, Ramya Thota, David B. Staggs, Douglas B. Johnson, Jeremy L. Warner:
Pragmatic precision oncology: the secondary uses of clinical tumor molecular profiling. J. Am. Medical Informatics Assoc. 23(4): 773-776 (2016) - [j7]Wei-Qi Wei, Pedro L. Teixeira, Huan Mo, Robert M. Cronin, Jeremy L. Warner, Joshua C. Denny:
Combining billing codes, clinical notes, and medications from electronic health records provides superior phenotyping performance. J. Am. Medical Informatics Assoc. 23(e1): e20-e27 (2016) - [j6]Jeremy L. Warner, Peijin Zhang, Jenny Liu, Gil Alterovitz:
Classification of hospital acquired complications using temporal clinical information from a large electronic health record. J. Biomed. Informatics 59: 209-217 (2016) - [c13]Jesus Caban, Adam Perer, Uba Backonja, Jeremy L. Warner, Shira Fischer:
Workshop on Visual Analytics in Healthcare. AMIA 2016 - 2015
- [j5]Hua Xu, Melinda C. Aldrich, Qingxia Chen, Hongfang Liu, Neeraja B. Peterson, Qi Dai, Mia A. Levy, Anushi Shah, Han Xue, Xiaoyang Ruan, Min Jiang, Ying Li, Jamii St Julien, Jeremy L. Warner, Carol Friedman, Dan M. Roden, Joshua C. Denny:
Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality. J. Am. Medical Informatics Assoc. 22(1): 179-191 (2015) - [j4]Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz:
Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization. J. Am. Medical Informatics Assoc. 22(2): 324-329 (2015) - [j3]Jeremy L. Warner, Suzanne E. Maddux, Kevin S. Hughes, John C. Krauss, Peter Paul Yu, Lawrence N. Shulman, Deborah K. Mayer, Mike Hogarth, Mark Shafarman, Allison Stover Fiscalini, Laura Esserman, Liora Alschuler, George A. Koromia, Zabrina Gonzaga, Edward P. Ambinder:
Development, implementation, and initial evaluation of a foundational open interoperability standard for oncology treatment planning and summarization. J. Am. Medical Informatics Assoc. 22(3): 577-586 (2015) - [j2]Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane:
SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. J. Am. Medical Informatics Assoc. 22(6): 1173-1178 (2015) - [c12]Matthew J. Rioth, Jeremy L. Warner:
Visualizing High Dimensional Clinical and Tumor Genotyping Data. AMIA 2015 - 2014
- [c11]Robert J. Carroll, Jeremy L. Warner, Anne E. Eyler, Charles Moore, Jayanth Doss, Katherine P. Liao, Robert M. Plenge, Joshua C. Denny:
PheWAS and Genetics Define Subphenotypes in Drug Response. AMIA 2014 - [c10]Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu:
Identifying Metastases from Pathology Reports in Lung Cancer Patients. AMIA 2014 - [c9]Wei-Qi Wei, Pedro L. Teixeira, Huan Mo, Robert M. Cronin, Jeremy L. Warner, Joshua C. Denny:
Evaluation of Diagnosis Codes, Clinical Notes, and Medications on Identifying Subjects with a Specific Disease Phenotype. AMIA 2014 - [c8]Hua Xu, Qingxia Chen, Jeremy L. Warner, Han Xue, Min Jiang, Anushi Shah, Melinda Aldrich, Qi Dai, Joshua C. Denny:
Mining electronic health record data to detect drug-repurposing signals for cancers. AMIA 2014 - 2013
- [j1]Jeremy L. Warner, Gil Alterovitz, Kelly Bodio, Robin M. Joyce:
Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma. J. Am. Medical Informatics Assoc. 20(4): 696-699 (2013) - [c7]Michael C. Gao, Jeremy L. Warner, Peter C. Yang, Gil Alterovitz:
Constructing a Novel Cancer Ontology. AMIA 2013 - [c6]Jeremy L. Warner, Gil Alterovitz, Joshua C. Denny, Robert Fassett, Kevin S. Hughes:
Sharing of Genomic Information: Perspectives from Stakeholders. AMIA 2013 - [c5]Jeremy L. Warner, Quan Ding, David A. Kreda, Zi'ou Zheng, Keshav Gupta, Joshua C. Denny, Gil Alterovitz:
Phenometric analysis of electronic health records: a new approach to visualization of high dimensional biomedical information. AMIA 2013 - [c4]Jeremy L. Warner, Peter C. Yang, Gil Alterovitz:
Automated Synthesis and Visualization of a Chemotherapy Treatment Regimen Network. MedInfo 2013: 62-66 - [c3]Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz:
Analytic Approaches to Phenotypic Complexity. MedInfo 2013: 1267 - 2012
- [c2]Jeremy L. Warner, Gil Alterovitz:
Phenome-Based Analysis as a Means for Discovering Context-Dependent Clinical Reference Ranges. AMIA 2012 - [c1]Jeremy L. Warner, Peter Anick, Kenneth Roach, Nianwen Xue, Robin M. Joyce, Charles Safran, Pengyu Hong:
Towards an Annotation Schema for Cancer Trajectory State Detection. AMIA 2012
Coauthor Index
aka: Joshua Charles Denny
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