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ORCIDFrontiers in Neuroinformatics, Volume 10
Volume 10, 2016
- Helena T. Glabska, Eivind S. Norheim, Anna Devor
, Anders M. Dale, Gaute T. Einevoll, Daniel K. Wójcik:
Generalized Laminar Population Analysis (gLPA) for Interpretation of Multielectrode Data from Cortex. 1 - Mary K. Askren, Trevor K. McAllister-Day, Natalie Koh, Zoé Mestre, Jennifer N. Dines, Benjamin A. Korman, Susan J. Melhorn, Daniel J. Peterson, Matthew Peverill, Xiaoyan Qin, Swati D. Rane, Melissa A. Reilly, Maya A. Reiter, Kelly A. Sambrook, Karl A. Woelfer, Thomas J. Grabowski, Tara M. Madhyastha:
Using Make for Reproducible and Parallel Neuroimaging Workflow and Quality-Assurance. 2 - Makoto Takemiya, Kei Majima, Mitsuaki Tsukamoto, Yukiyasu Kamitani:
BrainLiner: A Neuroinformatics Platform for Sharing Time-Aligned Brain-Behavior Data. 3 - Oscar Esteban, Emmanuel Caruyer, Alessandro Daducci, Meritxell Bach Cuadra, María J. Ledesma-Carbayo, Andrés Santos:
Diffantom: Whole-Brain Diffusion MRI Phantoms Derived from Real Datasets of the Human Connectome Project. 4 - Dimitris Sakellariou, Andreas M. Koupparis, Vasileios Kokkinos, Michalis Koutroumanidis, George K. Kostopoulos:
Connectivity Measures in EEG Microstructural Sleep Elements. 5 - Alexander Dubbs, James Guevara, Rafael Yuste:
moco: Fast Motion Correction for Calcium Imaging. 6 - Nima Bigdely Shamlo, Scott Makeig, Kay A. Robbins:
Preparing Laboratory and Real-World EEG Data for Large-Scale Analysis: A Containerized Approach. 7 - Benjamin D. Evans, Sarah Jarvis, Simon R. Schultz, Konstantin Nikolic:
PyRhO: A Multiscale Optogenetics Simulation Platform. 8 - Sandeep R. Panta, Runtang Wang, Jill Fries, Ravi Kalyanam, Nicole K. Speer, Marie T. Banich, Kent A. Kiehl, Margaret D. King, Michael P. Milham, Tor D. Wager, Jessica A. Turner, Sergey M. Plis, Vince D. Calhoun:
A Tool for Interactive Data Visualization: Application to Over 10, 000 Brain Imaging and Phantom MRI Data Sets. 9 - Marco Ganzetti, Nicole Wenderoth, Dante Mantini:
Intensity Inhomogeneity Correction of Structural MR Images: A Data-Driven Approach to Define Input Algorithm Parameters. 10 - Eszter A. Papp, Trygve B. Leergaard, Gergely Csúcs, Jan G. Bjaalie:
Brain-Wide Mapping of Axonal Connections: Workflow for Automated Detection and Spatial Analysis of Labeling in Microscopic Sections. 11 - Richard Beare, Jian Chen, Claire E. Kelly, Dimitrios Alexopoulos, Christopher D. Smyser, Cynthia E. Rogers, Wai Yen Loh, Lillian G. Matthews, Jeanie L. Y. Cheong, Alicia J. Spittle, Peter J. Anderson, Lex W. Doyle, Terrie E. Inder, Marc L. Seal, Deanne K. Thompson:
Neonatal Brain Tissue Classification with Morphological Adaptation and Unified Segmentation. 12 - Vito Paolo Pastore, Daniele Poli, Aleksandar Godjoski, Sergio Martinoia, Paolo Massobrio:
ToolConnect: A Functional Connectivity Toolbox for In vitro Networks. 13 - Sejal Patel, Min Tae M. Park, M. Mallar Chakravarty, Jo Knight:
Gene Prioritization for Imaging Genetics Studies Using Gene Ontology and a Stratified False Discovery Rate Approach. 14 - Yinghua Wang, Jiaqing Yan, Jianbin Wen, Tao Yu, Xiaoli Li:
An Intracranial Electroencephalography (iEEG) Brain Function Mapping Tool with an Application to Epilepsy Surgery Evaluation. 15 - Dmitrii I. Sukhinin, Andreas K. Engel, Paul Manger, Claus C. Hilgetag:
Building the Ferretome. 16 - Werner Van Geit, Michael Gevaert, Giuseppe Chindemi, Christian Rössert, Jean-Denis Courcol, Eilif B. Müller, Felix Schürmann, Idan Segev, Henry Markram:
BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. 17 - Satya S. Sahoo, Annan Wei, Joshua Valdez, Li Wang, Bilal Zonjy, Curtis Tatsuoka, Kenneth A. Loparo, Samden D. Lhatoo:
NeuroPigPen: A Scalable Toolkit for Processing Electrophysiological Signal Data in Neuroscience Applications Using Apache Pig. 18 - Nicoletta Nicolaou, Timothy G. Constandinou:
A Nonlinear Causality Estimator Based on Non-Parametric Multiplicative Regression. 19 - Sulantha Mathotaarachchi, Seqian Wang, Monica Shin, Tharick A. Pascoal, Andréa L. Benedet, Min Su Kang, Thomas Beaudry, Vladimir S. Fonov, Serge Gauthier, Aurélie Labbe, Pedro Rosa-Neto:
VoxelStats: A MATLAB Package for Multi-Modal Voxel-Wise Brain Image Analysis. 20 - Zhao Feng, Anan Li, Hui Gong, Qingming Luo:
An Automatic Method for Nucleus Boundary Segmentation Based on a Closed Cubic Spline. 21 - Luz María Alonso-Valerdi:
Python Executable Script for Estimating Two Effective Parameters to Individualize Brain-Computer Interfaces: Individual Alpha Frequency and Neurophysiological Predictor. 22 - Carmen Alina Lupascu, Annunziato Morabito, Elisabetta Merenda, Silvia Marinelli, Cristina Marchetti, Rosanna Migliore, Enrico Cherubini, Michele Migliore:
A General Procedure to Study Subcellular Models of Transsynaptic Signaling at Inhibitory Synapses. 23 - Ruth Pauli, Alexander Bowring, Richard C. Reynolds, Gang Chen, Thomas E. Nichols, Camille Maumet:
Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. 24 - Haiyong Wu, Geng Chen, Yan Jin, Dinggang Shen, Pew-Thian Yap:
Embarrassingly Parallel Acceleration of Global Tractography via Dynamic Domain Partitioning. 25 - Lyuba Zehl, Florent Jaillet, Adrian Stoewer, Jan Grewe, Andrey Sobolev, Thomas Wachtler, Thomas Brochier, Alexa Riehle, Michael Denker, Sonja Grün:
Handling Metadata in a Neurophysiology Laboratory. 26 - Nikolaas N. Oosterhof, Andrew C. Connolly, James V. Haxby:
CoSMoMVPA: Multi-Modal Multivariate Pattern Analysis of Neuroimaging Data in Matlab/GNU Octave. 27 - William Grisham, Barbara Lom, Linda J. Lanyon, Raddy L. Ramos:
Proposed Training to Meet Challenges of Large-Scale Data in Neuroscience. 28 - Jessica L. Forbes, Regina E. Y. Kim, Jane S. Paulsen, Hans J. Johnson:
An Open-Source Label Atlas Correction Tool and Preliminary Results on Huntingtons Disease Whole-Brain MRI Atlases. 29 - José V. Manjón, Pierrick Coupé:
volBrain: An Online MRI Brain Volumetry System. 30 - Philipp Weidel, Mikael Djurfeldt, Renato C. Duarte, Abigail Morrison:
Closed Loop Interactions between Spiking Neural Network and Robotic Simulators Based on MUSIC and ROS. 31 - Antonio Ulloa, Barry Horwitz:
Embedding Task-Based Neural Models into a Connectome-Based Model of the Cerebral Cortex. 32 - Eloy Roura, Nicolae Sarbu, Arnau Oliver, Sergi Valverde, Sandra González-Villà, Ricard Cervera, Núria Bargalló, Xavier Lladó:
Automated Detection of Lupus White Matter Lesions in MRI. 33 - Leah B. Honor, Christian Haselgrove, Jean A. Frazier, David N. Kennedy:
Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. 34 - Robert D. Vincent, Peter Neelin, Najmeh Khalili-Mahani, Andrew L. Janke, Vladimir S. Fonov, Steven M. Robbins, Leila Baghdadi, Jason P. Lerch, John G. Sled, Reza Adalat, David MacDonald, Alex P. Zijdenbos, D. Louis Collins, Alan C. Evans:
MINC 2.0: A Flexible Format for Multi-Modal Images. 35 - Diego A. Angulo, Cyril Schneider, James H. Oliver, Nathalie Charpak, José T. Hernández:
A Multi-facetted Visual Analytics Tool for Exploratory Analysis of Human Brain and Function Datasets. 36 - Aldo Zaimi, Tanguy Duval, Alicja Gasecka, Daniel Côté, Nikola Stikov, Julien Cohen-Adad:
AxonSeg: Open Source Software for Axon and Myelin Segmentation and Morphometric Analysis. 37 - Robert Meyer, Klaus Obermayer:
pypet: A Python Toolkit for Data Management of Parameter Explorations. 38 - Erinç Gökdeniz, Arzucan Özgür, Resit Canbeyli:
Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study. 39 - Gonzalo M. Rojas, Jorge A. Fuentes, Marcelo Gálvez:
Mobile Device Applications for the Visualization of Functional Connectivity Networks and EEG Electrodes: iBraiN and iBraiNEEG. 40 - Angel Lareo, Caroline Garcia Forlim, Reynaldo D. Pinto, Pablo Varona, Francisco de Borja Rodríguez Ortiz:
Temporal Code-Driven Stimulation: Definition and Application to Electric Fish Signaling. 41 - Nima Bigdely Shamlo, Jeremy Cockfield, Scott Makeig, Thomas Rognon, Chris La Valle, Makoto Miyakoshi, Kay A. Robbins:
Hierarchical Event Descriptors (HED): Semi-Structured Tagging for Real-World Events in Large-Scale EEG. 42 - Leah B. Honor, Christian Haselgrove, Jean A. Frazier, David N. Kennedy:
Corrigendum: Data Citation in Neuroimaging: Proposed Best Practices for Data Identification and Attribution. 43 - Sergio E. Galindo, Pablo Toharia, Oscar David Robles, Luis Pastor:
ViSimpl: Multi-View Visual Analysis of Brain Simulation Data. 44 - Kathleen M. Gates, Teague Rhine Henry, Doug Steinley, Damien A. Fair:
A Monte Carlo Evaluation of Weighted Community Detection Algorithms. 45 - Kamal Shadi, Saeideh Bakhshi, David A. Gutman, Helen S. Mayberg, Constantine Dovrolis:
A Symmetry-Based Method to Infer Structural Brain Networks from Probabilistic Tractography Data. 46 - Jian Zhang, Chong Li, Tianzi Jiang:
New Insights into Signed Path Coefficient Granger Causality Analysis. 47 - Oliver Rübel, Max Dougherty, Prabhat, Peter Denes, David Conant, Edward F. Chang, Kristofer E. Bouchard:
Methods for Specifying Scientific Data Standards and Modeling Relationships with Applications to Neuroscience. 48 - Natalia Y. Bilenko, Jack L. Gallant:
Pyrcca: Regularized Kernel Canonical Correlation Analysis in Python and Its Applications to Neuroimaging. 49 - Kristian Loewe, Sarah E. Donohue, Mircea Ariel Schoenfeld, Rudolf Kruse, Christian Borgelt:
Memory-Efficient Analysis of Dense Functional Connectomes. 50 - Marieke Musegaas, Bas J. Dietzenbacher, Peter E. M. Borm:
On Shapley Ratings in Brain Networks. 51 - Ricardo Pizarro, Xi Cheng, Alan S. Barnett, Hervé Lemaître, Beth A. Verchinski, Aaron L. Goldman, Ena Xiao, Qian Luo, Karen Faith Berman, Joseph H. Callicott, Daniel R. Weinberger, Venkata S. Mattay:
Automated Quality Assessment of Structural Magnetic Resonance Brain Images Based on a Supervised Machine Learning Algorithm. 52 - Samir Das, Tristan Glatard, Christine Rogers, John Saigle, Santiago Paiva, Leigh C. MacIntyre, Mouna Safi-Harb, Marc-Etienne Rousseau, Jordan Stirling, Najmeh Khalili-Mahani, Dave MacFarlane, Penelope Kostopoulos, Pierre Rioux, Cecile Madjar, Xavier Lecours-Boucher, Sandeep Vanamala, Reza Adalat, Zia Mohaddes, Vladimir S. Fonov, Sylvain Milot, Ilana Leppert, Clotilde Degroot, Thomas M. Durcan, Tara Campbell, Jeremy T. Moreau, Alain Dagher, D. Louis Collins, Jason Karamchandani, Amit Bar-Or, Edward A. Fon, Rick Hoge, Sylvain Baillet, Guy Rouleau, Alan C. Evans:
Cyberinfrastructure for Open Science at the Montreal Neurological Institute. 53
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