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2020 – today
- 2020
[j51]Songshan Yang, Jiawei Wen, Scott T. Eckert, Yaqun Wang, Dajiang J. Liu
, Rongling Wu, Runze Li, Xiang Zhan:
Prioritizing genetic variants in GWAS with lasso using permutation-assisted tuning. Bioinform. 36(12): 3811-3817 (2020)- [j50]Zhong Wang, Nating Wang, Zilu Wang, Libo Jiang, Yaqun Wang, Jiahan Li, Rongling Wu, Janet Kelso:
HiGwas: how to compute longitudinal GWAS data in population designs. Bioinform. 36(14): 4222-4224 (2020)
2010 – 2019
- 2018
- [j49]Guifang Fu, Mian Huang, Wenhao Bo, Han Hao, Rongling Wu:
Mapping morphological shape as a high-dimensional functional curve. Briefings Bioinform. 19(3): 461-471 (2018) - [j48]Liyong Fu, Lidan Sun, Han Hao, Libo Jiang, Sheng Zhu, Meixia Ye, Shouzheng Tang, Minren Huang, Rongling Wu:
How trees allocate carbon for optimal growth: insight from a game-theoretic model. Briefings Bioinform. 19(4): 593-602 (2018) - [j47]Lidan Sun, Jing Wang, Xuli Zhu, Libo Jiang, Kirk Gosik, Mengmeng Sang, Fengsuo Sun, Tangren Cheng, Qixiang Zhang, Rongling Wu:
HpQTL: a geometric morphometric platform to compute the genetic architecture of heterophylly. Briefings Bioinform. 19(4): 603-612 (2018) - [j46]Yang-Jun Wen, Hanwen Zhang, Yuan-Li Ni, Bo Huang, Jin Zhang, Jian-Ying Feng, Shi-Bo Wang, Jim M. Dunwell, Yuan-Ming Zhang, Rongling Wu:
Methodological implementation of mixed linear models in multi-locus genome-wide association studies. Briefings Bioinform. 19(4): 700-712 (2018) - [j45]Lidan Sun, Mengmeng Sang, Chenfei Zheng, Dongyang Wang, Hexin Shi, Kaiyue Liu, Yanfang Guo, Tangren Cheng, Qixiang Zhang, Rongling Wu:
The genetic architecture of heterochrony as a quantitative trait: lessons from a computational model. Briefings Bioinform. 19(6): 1430-1439 (2018) - 2017
- [j44]Qin Yan, Xuli Zhu, Libo Jiang, Meixia Ye, Lidan Sun, John S. Terblanche, Rongling Wu:
A computing platform to map ecological metabolism by integrating functional mapping and the metabolic theory of ecology. Briefings Bioinform. 18(1): 137-144 (2017) - [j43]Kirk Gosik, Lan Kong, Vernon M. Chinchilli, Rongling Wu:
iFORM/eQTL: an ultrahigh-dimensional platform for inferring the global genetic architecture of gene transcripts. Briefings Bioinform. 18(2): 250-259 (2017) - [j42]Jing Wang, Lidan Sun, Libo Jiang, Mengmeng Sang, Meixia Ye, Tangran Cheng, Qixiang Zhang, Rongling Wu:
A high-dimensional linkage analysis model for characterizing crossover interference. Briefings Bioinform. 18(3): 382-393 (2017) - [j41]Libo Jiang, Miaomiao Zhang, Mengmeng Sang, Meixia Ye, Rongling Wu:
Evo-Devo-EpiR: a genome-wide search platform for epistatic control on the evolution of development. Briefings Bioinform. 18(5): 754-760 (2017) - [j40]Yang-Jun Wen, Hanwen Zhang, Yuan-Li Ni, Bo Huang, Jin Zhang, Jian-Ying Feng, Shi-Bo Wang, Jim M. Dunwell, Yuan-Ming Zhang, Rongling Wu:
Methodological implementation of mixed linear models in multi-locus genome-wide association studies. Briefings Bioinform. 18(5): 906 (2017) - [j39]Xuli Zhu, Huan Li, Meixia Ye, Libo Jiang, Mengmeng Sang, Rongling Wu:
AlloMap6: an R package for genetic linkage analysis in allohexaploids. Briefings Bioinform. 18(6): 919-927 (2017) - 2015
- [j38]Tao Zhou, Yafei Lyu, Fang Xu, Wenhao Bo, Yi Zhai, Jian Zhang, Xiaoming Pang, Bingsong Zheng, Rongling Wu:
A QTL model to map the common genetic basis for correlative phenotypic plasticity. Briefings Bioinform. 16(1): 24-31 (2015) - [j37]Fang Xu, Chunfa Tong, Yafei Lyu, Wenhao Bo, Xiaoming Pang, Rongling Wu:
Allotetraploid and autotetraploid models of linkage analysis. Briefings Bioinform. 16(1): 32-38 (2015) - [j36]Meixia Ye, Zhong Wang, Yaqun Wang, Rongling Wu:
A multi-Poisson dynamic mixture model to cluster developmental patterns of gene expression by RNA-seq. Briefings Bioinform. 16(2): 205-215 (2015) - [j35]Lidan Sun, Xuli Zhu, Wenhao Bo, Fang Xu, Tangren Cheng, Qixiang Zhang, Rongling Wu:
An open-pollinated design for mapping imprinting genes in natural populations. Briefings Bioinform. 16(3): 449-460 (2015) - [j34]Meixia Ye, Libo Jiang, Ke Mao, Yaqun Wang, Zhong Wang, Rongling Wu:
Functional mapping of seasonal transition in perennial plants. Briefings Bioinform. 16(3): 526-535 (2015) - [j33]Libo Jiang, Jingyuan Liu, Xuli Zhu, Meixia Ye, Lidan Sun, Xavier Lacaze, Rongling Wu:
2HiGWAS: a unifying high-dimensional platform to infer the global genetic architecture of trait development. Briefings Bioinform. 16(6): 905-911 (2015) - 2014
- [j32]Zhong Wang, Yaqun Wang, Ningtao Wang, Jianxin Wang, Zuoheng Wang, C. Eduardo Vallejos, Rongling Wu:
Towards a comprehensive picture of the genetic landscape of complex traits. Briefings Bioinform. 15(1): 30-42 (2014) - [j31]Chunfa Tong, Lianying Shen, Yafei Lv, Zhong Wang, Xiaoling Wang, Sisi Feng, Xin Li, Yihan Sui, Xiaoming Pang, Rongling Wu:
Structural mapping: how to study the genetic architecture of a phenotypic trait through its formation mechanism. Briefings Bioinform. 15(1): 43-53 (2014) - [j30]Yanru Zeng, Wei Hou, Shuang Song, Sisi Feng, Lin Shen, Guohua Xia, Rongling Wu:
A statistical design for testing apomictic diversification through linkage analysis. Briefings Bioinform. 15(2): 306-318 (2014) - [j29]Yihan Sui, Weimiao Wu, Zhong Wang, Jianxin Wang, Zuoheng Wang, Rongling Wu:
A case-control design for testing and estimating epigenetic effects on complex diseases. Briefings Bioinform. 15(2): 319-326 (2014) - [j28]Ningtao Wang, Yaqun Wang, Han Hao, Luojun Wang, Zhong Wang, Jianxin Wang, Rongling Wu:
A bi-Poisson model for clustering gene expression profiles by RNA-seq. Briefings Bioinform. 15(4): 534-541 (2014) - [j27]Zhongwen Huang, Chunfa Tong, Wenhao Bo, Xiaoming Pang, Zhong Wang, Jichen Xu, Junyi Gai, Rongling Wu:
An allometric model for mapping seed development in plants. Briefings Bioinform. 15(4): 562-570 (2014) - [j26]Wenhao Bo, Zhong Wang, Fang Xu, Guifang Fu, Yihan Sui, Weimiao Wu, Xuli Zhu, Danni Yin, Qin Yan, Rongling Wu:
Shape mapping: genetic mapping meets geometric morphometrics. Briefings Bioinform. 15(4): 571-581 (2014) - [j25]Wenhao Bo, Guifang Fu, Zhong Wang, Fang Xu, Yong Shen, Jichen Xu, Zhongwen Huang, Junyi Gai, C. Eduardo Vallejos, Rongling Wu:
Systems mapping: how to map genes for biomass allocation toward an ideotype. Briefings Bioinform. 15(4): 660-669 (2014) - [j24]Fang Xu, Yafei Lyu, Chunfa Tong, Weimiao Wu, Xuli Zhu, Danni Yin, Qin Yan, Jian Zhang, Xiaoming Pang, Christian M. Tobias, Rongling Wu:
A statistical model for QTL mapping in polysomic autotetraploids underlying double reduction. Briefings Bioinform. 15(6): 1044-1056 (2014) - [j23]Jiahan Li, Jun Dan, Chunlei Li, Rongling Wu:
A model-free approach for detecting interactions in genetic association studies. Briefings Bioinform. 15(6): 1057-1068 (2014) - [j22]Xin Li, Yihan Sui, Tian Liu, Jianxin Wang, Yongci Li, Zhenwu Lin, John Hegarty, Walter A. Koltun, Zuoheng Wang, Rongling Wu:
A model for family-based case-control studies of genetic imprinting and epistasis. Briefings Bioinform. 15(6): 1069-1079 (2014) - [c4]Jingna Si, Jin Cheng, Rongling Wu:
PFGD: A systematic functional genomics resource for Poplar. BIBM 2014: 18-22 - 2013
- [j21]Zhong Wang, Xiaoming Pang, Yafei Lv, Fang Xu, Tao Zhou, Xin Li, Sisi Feng, Jiahan Li, Zhikang Li, Rongling Wu:
A dynamic framework for quantifying the genetic architecture of phenotypic plasticity. Briefings Bioinform. 14(1): 82-95 (2013) - [j20]Xiaoxia Yang, Yafei Lv, Xiaoming Pang, Chunfa Tong, Zhong Wang, Xin Li, Sisi Feng, Christian M. Tobias, Rongling Wu:
A unifying framework for bivalent multilocus linkage analysis of allotetraploids. Briefings Bioinform. 14(1): 96-108 (2013) - [j19]Xiaoming Pang, Zhong Wang, John S. Yap, Jianxin Wang, Junjia Zhu, Wenhao Bo, Yafei Lv, Fang Xu, Tao Zhou, Shaofeng Peng, Dengfeng Shen, Rongling Wu:
A statistical procedure to map high-order epistasis for complex traits. Briefings Bioinform. 14(3): 302-314 (2013) - [j18]Yafei Lv, Xiaoxia Yang, Chunfa Tong, Xin Li, Sisi Feng, Zhong Wang, Xiaoming Pang, Yaqun Wang, Ningtao Wang, Christian M. Tobias, Rongling Wu:
A multivalent three-point linkage analysis model of autotetraploids. Briefings Bioinform. 14(4): 460-468 (2013) - [j17]Sheng Zhu, Zhong Wang, Jianxin Wang, Yaqun Wang, Ningtao Wang, Zuoheng Wang, Meng Xu, Xiaohua Su, Mingxiu Wang, Shougong Zhang, Minren Huang, Rongling Wu:
A quantitative model of transcriptional differentiation driving host-pathogen interactions. Briefings Bioinform. 14(6): 713-723 (2013) - 2012
- [j16]Chenguang Wang, Zhong Wang, Daniel R. Prows, Rongling Wu:
A computational framework for the inheritance pattern of genomic imprinting for complex traits. Briefings Bioinform. 13(1): 34-45 (2012) - [j15]Yakun Wang, Meng Xu, Zhong Wang, Ming Tao, Junjia Zhu, Li Wang, Runze Li, Scott A. Berceli, Rongling Wu:
How to cluster gene expression dynamics in response to environmental signals. Briefings Bioinform. 13(2): 162-174 (2012) - [j14]Xiyang Zhao, Chunfa Tong, Xiaoming Pang, Zhong Wang, Yunqian Guo, Fang Du, Rongling Wu:
Functional mapping of ontogeny in flowering plants. Briefings Bioinform. 13(3): 317-328 (2012) - [j13]Zhong Wang, Zuoheng Wang, Jianxin Wang, Yihan Sui, Jian Zhang, Duanping Liao, Rongling Wu:
A quantitative genetic and epigenetic model of complex traits. BMC Bioinform. 13: 274 (2012) - 2011
- [j12]Jiahan Li, Kiranmoy Das, Guifang Fu, Runze Li, Rongling Wu:
The Bayesian lasso for genome-wide association studies. Bioinform. 27(4): 516-523 (2011) - [j11]Chunfa Tong, Zhong Wang, Bo Zhang, Jisen Shi, Rongling Wu:
3FunMap: full-sib family functional mapping of dynamic traits. Bioinform. 27(14): 2006-2008 (2011) - [j10]Rongling Wu, Jiguo Cao, Zhongwen Huang, Zhong Wang, Junyi Gai, C. Eduardo Vallejos:
Systems mapping: how to improve the genetic mapping of complex traits through design principles of biological systems. BMC Syst. Biol. 5: 84 (2011) - 2010
- [j9]Bong-Rae Kim, Timothy McMurry, Wei Zhao, Rongling Wu, Arthur Berg:
Wavelet-Based Functional Clustering for Patterns of High-Dimensional Dynamic Gene Expression. J. Comput. Biol. 17(8): 1067-1080 (2010)
2000 – 2009
- 2009
- [j8]Tian Liu, Rongling Wu:
A Bayesian Algorithm for Functional Mapping of Dynamic Complex Traits. Algorithms 2(2): 667-691 (2009) - [j7]Sheron Wen, Chenguang Wang, Arthur Berg, Yao Li, Myron M. Chang, Roger B. Fillingim, Margaret R. Wallace, Roland Staud, Lee Kaplan, Rongling Wu:
Modeling genetic imprinting effects of DNA sequences with multilocus polymorphism data. Algorithms Mol. Biol. 4 (2009) - 2008
- [c3]Yunmei Chen, Guifang Fu, Rongling Wu:
Integration of Functional Mapping and Delay Differential Equations to Map the Genes that Regulate Circadian Rhythms. BCBGC 2008: 118-125 - 2007
- [j6]Min Lin, Hongying Li, Wei Hou, Julie A. Johnson, Rongling Wu:
Modeling sequence-sequence interactions for drug response. Bioinform. 23(10): 1251-1257 (2007) - [c2]Song Wu, Jie Yang, Rongling Wu:
Semiparametric functional mapping of quantitative trait loci governing long-term HIV dynamics. ISMB/ECCB (Supplement of Bioinformatics) 2007: 569-576 - 2006
- [j5]Min Lin, Rongling Wu:
A joint model for nonparametric functional mapping of longitudinal trajectory and time-to-event. BMC Bioinform. 7: 138 (2006) - [c1]Min Lin, Rongling Wu, Julie A. Johnson:
A Bivariate Functional Mapping Model for Identifying Haplotypes that Control Drug Response for Systolic and Diastolic Blood Pressures. Pacific Symposium on Biocomputing 2006: 572-583 - 2005
- [j4]Yuehua Cui, Rongling Wu:
Mapping genome-genome epistasis: a high-dimensional model. Bioinform. 21(10): 2447-2455 (2005) - [j3]Wei Zhao, Ying Q. Chen, George Casella, James M. Cheverud, Rongling Wu:
A non-stationary model for functional mapping of complex traits. Bioinform. 21(10): 2469-2477 (2005) - 2004
- [j2]Chang-Xing Ma, Rongling Wu, George Casella:
FunMap: functional mapping of complex traits. Bioinform. 20(11): 1808-1811 (2004) - [j1]Rongling Wu, Chang-Xing Ma, George Casella:
A Mixed Polyploid Model for Linkage Analysis in Outcrossing Tetraploids Using a Pseudo-Test Backcross Design. J. Comput. Biol. 11(4): 562-580 (2004)
Coauthor Index
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