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2020 – today
- 2024
[j36]Shan Chen
, Yingya Li, Sheng Lu, Hoang Van, Hugo J. W. L. Aerts, Guergana K. Savova, Danielle S. Bitterman:
Evaluating the ChatGPT family of models for biomedical reasoning and classification. J. Am. Medical Informatics Assoc. 31(4): 940-948 (2024)- [j35]Marco Guevara, Shan Chen, Spencer Thomas, Tafadzwa L. Chaunzwa, Idalid Franco, Benjamin H. Kann, Shalini Moningi, Jack M. Qian, Madeleine Goldstein, Susan Harper, Hugo J. W. L. Aerts, Paul J. Catalano, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman:
Large language models to identify social determinants of health in electronic health records. npj Digit. Medicine 7(1) (2024) - [c72]Jon Z. Cai, Kristin Wright-Bettner, Martha Palmer, Guergana Savova, James H. Martin:
Adapting Abstract Meaning Representation Parsing to the Clinical Narrative - the SPRING THYME parser. ClinicalNLP@NAACL 2024: 271-282 - [c71]Jiarui Yao, Harry Hochheiser, Wonjin Yoon, Eli Goldner, Guergana Savova:
Overview of the 2024 Shared Task on Chemotherapy Treatment Timeline Extraction. ClinicalNLP@NAACL 2024: 557-569 - [i11]Jon Z. Cai, Kristin Wright-Bettner, Martha Palmer, Guergana K. Savova, James H. Martin:
Adapting Abstract Meaning Representation Parsing to the Clinical Narrative - the SPRING THYME parser. CoRR abs/2405.09153 (2024) - [i10]Daniela Andreeva, Guergana Savova:
Artificial Intelligence in the Legal Field: Law Students Perspective. CoRR abs/2410.09937 (2024) - [i9]João Matos, Shan Chen, Siena Placino, Yingya Li, Juan Carlos Climent Pardo, Daphna Idan, Takeshi Tohyama, David Restrepo, Luis Filipe Nakayama, Jose M. M. Pascual-Leone, Guergana Savova, Hugo J. W. L. Aerts, Leo A. Celi, A. Ian Wong, Danielle S. Bitterman, Jack Gallifant:
WorldMedQA-V: a multilingual, multimodal medical examination dataset for multimodal language models evaluation. CoRR abs/2410.12722 (2024) - [i8]Yingya Li, Timothy A. Miller, Steven Bethard, Guergana Savova:
Identifying Task Groupings for Multi-Task Learning Using Pointwise V-Usable Information. CoRR abs/2410.12774 (2024) - 2023
- [j34]Weipeng Zhou, Meliha Yetisgen, Majid Afshar, Yanjun Gao, Guergana Savova, Timothy A. Miller:
Improving model transferability for clinical note section classification models using continued pretraining. J. Am. Medical Informatics Assoc. 31(1): 89-97 (2023) - [c70]Lijing Wang, Yingya Li, Timothy A. Miller, Steven Bethard, Guergana Savova:
Two-Stage Fine-Tuning for Improved Bias and Variance for Large Pretrained Language Models. ACL (1) 2023: 15746-15761 - [c69]Jiarui Yao, Steven Bethard, Kristin Wright-Bettner, Eli Goldner, David Harris, Guergana Savova:
Textual Entailment for Temporal Dependency Graph Parsing. ClinicalNLP@ACL 2023: 191-199 - [c68]Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Guergana Savova:
End-to-end clinical temporal information extraction with multi-head attention. BioNLP@ACL 2023: 313-319 - [c67]Sheng Lu, Shan Chen, Yingya Li, Danielle S. Bitterman, Guergana Savova, Iryna Gurevych:
Measuring Pointwise \mathcalV-Usable Information In-Context-ly. EMNLP (Findings) 2023: 15739-15756 - [i7]Shan Chen, Marco Guevara, Nicolas Ramirez, Arpi Murray, Jeremy L. Warner, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman:
Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy. CoRR abs/2303.13722 (2023) - [i6]Shan Chen, Yingya Li, Sheng Lu, Hoang Van, Hugo J. W. L. Aerts, Guergana K. Savova, Danielle S. Bitterman:
Evaluation of ChatGPT Family of Models for Biomedical Reasoning and Classification. CoRR abs/2304.02496 (2023) - [i5]Marco Guevara, Shan Chen, Spencer Thomas, Tafadzwa L. Chaunzwa, Idalid Franco, Benjamin H. Kann, Shalini Moningi, Jack M. Qian, Madeleine Goldstein, Susan Harper, Hugo J. W. L. Aerts, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman:
Large Language Models to Identify Social Determinants of Health in Electronic Health Records. CoRR abs/2308.06354 (2023) - [i4]Sheng Lu, Shan Chen, Yingya Li, Danielle S. Bitterman, Guergana Savova, Iryna Gurevych:
Measuring Pointwise $\mathcal{V}$-Usable Information In-Context-ly. CoRR abs/2310.12300 (2023) - [i3]Shan Chen, Marco Guevara, Shalini Moningi, Frank Hoebers, Hesham Elhalawani, Benjamin H. Kann, Fallon E. Chipidza, Jonathan Leeman, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Maryam Lustberg, Majid Afshar, Danielle S. Bitterman:
The impact of using an AI chatbot to respond to patient messages. CoRR abs/2310.17703 (2023) - 2022
- [c66]Harry Hochheiser, Sean Finan, Zhou Yuan, John D. Levander, Eric B. Durbin, Isaac Hands, Ramakanth Kavuluru, Jeremy L. Warner, Guergana Savova:
DeepPhe: Natural Language Processing Tools for Cancer Research and Surveillance. AMIA 2022 - 2021
- [c65]Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova:
EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain. BioNLP@NAACL-HLT 2021: 191-201 - 2020
- [j33]Alon Geva, Steven H. Abman, Shannon F. Manzi, Dunbar D. Ivy, Mary Mullen, John Griffin, Chen Lin, Guergana K. Savova, Kenneth D. Mandl:
Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources. J. Am. Medical Informatics Assoc. 27(2): 294-300 (2020) - [j32]Chen Lin, Steven Bethard, Dmitriy Dligach, Farig Sadeque, Guergana Savova, Timothy A. Miller:
Does BERT need domain adaptation for clinical negation detection? J. Am. Medical Informatics Assoc. 27(4): 584-591 (2020) - [c64]Danielle S. Bitterman, Timothy A. Miller, David Harris, Chen Lin, Sean Finan, Jeremy L. Warner, Raymond H. Mak, Guergana Savova:
Extracting Relations between Radiotherapy Treatment Details. ClinicalNLP@EMNLP 2020: 194-200 - [c63]Kristin Wright-Bettner, Chen Lin, Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Martha Palmer, James H. Martin, Guergana Savova:
Defining and Learning Refined Temporal Relations in the Clinical Narrative. LOUHI@EMNLP 2020: 104-114 - [c62]Wendy W. Chapman, Adela Grando, Merida L. Johns, Guergana Savova, Maia Hightower:
Training Women for Leadership in Informatics and Digital Health: A Report from the Inaugural Women in AMIA Leadership Program. AMIA 2020 - [c61]Stéphane M. Meystre, Jonathan C. Silverstein, Guergana Savova, Valentina Petkov, Bradley A. Malin:
De-Identification of Clinical Text: Stakeholders' Perspectives and Acceptance of Automatic De-Identification. AMIA 2020 - [c60]Chen Lin, Timothy A. Miller, Dmitriy Dligach, Farig Sadeque, Steven Bethard, Guergana Savova:
A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction. BioNLP 2020: 70-75 - [i2]Cindy Li, Elizabeth Chen, Guergana Savova, Hamish Fraser, Carsten Eickhoff:
Mining Misdiagnosis Patterns from Biomedical Literature. CoRR abs/2006.13721 (2020) - [i1]Gil Alon, Elizabeth Chen, Guergana Savova, Carsten Eickhoff:
Diagnosis Prevalence vs. Efficacy in Machine-learning Based Diagnostic Decision Support. CoRR abs/2006.13737 (2020)
2010 – 2019
- 2019
- [j31]Natalia Viani, Timothy A. Miller, Carlo Napolitano, Silvia G. Priori, Guergana K. Savova, Riccardo Bellazzi, Lucia Sacchi:
Supervised methods to extract clinical events from cardiology reports in Italian. J. Biomed. Informatics 95 (2019) - [c59]Kristin Wright-Bettner, Martha Palmer, Guergana Savova, Piet C. de Groen, Timothy A. Miller:
Cross-document coreference: An approach to capturing coreference without context. LOUHI@EMNLP 2019: 1-10 - 2018
- [j30]Aurélie Névéol, Hercules Dalianis, Sumithra Velupillai, Guergana Savova, Pierre Zweigenbaum:
Clinical Natural Language Processing in languages other than English: opportunities and challenges. J. Biomed. Semant. 9(1): 12:1-12:13 (2018) - [c58]Chen Lin, Timothy A. Miller, Dmitriy Dligach, Hadi Amiri, Steven Bethard, Guergana Savova:
Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction. Louhi@EMNLP 2018: 165-176 - [c57]Hadi Amiri, Kara M. Magane, Lauren E. Wisk, Guergana Savova, Elissa R. Weitzman:
Toward Large-scale and Multi-facet Analysis of First Person Alcohol Drinking. AMIA 2018 - [c56]Alon Geva, Jason P. Stedman, Guergana Savova, Chen Lin, Shannon F. Manzi, Paul Avillach, Kenneth D. Mandl:
ADEPT: An End-to-End System for High-Throughput Pharmacovigilance. AMIA 2018 - [c55]Guergana Savova, Merida L. Johns, Nancy M. Lorenzi, Patricia F. Brennan, Rebecca Crowley Jacobson:
Women in AMIA - Resources for Emerging Leaders. AMIA 2018 - [c54]Jeremy L. Warner, Guergana Savova, Noemie Elhadad, Lisa Bastarache, David Gotz:
Computable Longitudinal Patient Trajectories. AMIA 2018 - [c53]Hadi Amiri, Timothy A. Miller, Guergana Savova:
Spotting Spurious Data with Neural Networks. NAACL-HLT 2018: 2006-2016 - 2017
- [j29]Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Chen Lin, Guergana Savova:
Towards generalizable entity-centric clinical coreference resolution. J. Biomed. Informatics 69: 251-258 (2017) - [c52]Natalia Viani, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Carlo Napolitano, Silvia G. Priori, Riccardo Bellazzi, Lucia Sacchi, Guergana K. Savova:
Recurrent Neural Network Architectures for Event Extraction from Italian Medical Reports. AIME 2017: 198-202 - [c51]Aurélie Névéol, Noémie Elhadad, Sumithra Velupillai, Hua Xu, Guergana Savova:
Clinical Natural Language Processing in Languages Other Than English. AMIA 2017 - [c50]Guergana Savova, Eugene Tseytlin, Sean Finan, Melissa Castine, Timothy A. Miller, Olga Medvedeva, David Harris, Harry Hochheiser, Chen Lin, Girish Chavan, Rebecca Jacobson:
DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. AMIA 2017 - [c49]Timothy A. Miller, Steven Bethard, Hadi Amiri, Guergana Savova:
Unsupervised Domain Adaptation for Clinical Negation Detection. BioNLP 2017: 165-170 - [c48]Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova:
Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks. BioNLP 2017: 322-327 - [c47]Dmitriy Dligach, Timothy A. Miller, Chen Lin, Steven Bethard, Guergana Savova:
Neural Temporal Relation Extraction. EACL (2) 2017: 746-751 - [c46]Hadi Amiri, Timothy A. Miller, Guergana Savova:
Repeat before Forgetting: Spaced Repetition for Efficient and Effective Training of Neural Networks. EMNLP 2017: 2401-2410 - [c45]Steven Bethard, Guergana Savova, Martha Palmer, James Pustejovsky:
SemEval-2017 Task 12: Clinical TempEval. SemEval@ACL 2017: 565-572 - [e3]Svetla Boytcheva, Kevin Bretonnel Cohen, Guergana Savova, Galia Angelova:
Proceedings of the Biomedical NLP Workshop associated with RANLP 2017, Varna, Bulgaria, September 2017. INCOMA Ltd. 2017 [contents] - 2016
- [j28]Cassandra Brady, Bahram Namjou, Stephanie Kennebeck, Jonathan Bickel, Nandan Patibandla, Yizhao Ni, Sara Van Driest, Lixin Chen, Ashton Roach, Beth Cobb, Jacqueline Kirby, Joshua C. Denny, Lisa Bailey-Davis, Marc S. Williams, Keith Marsolo, Imre Solti, Ingrid A. Holm, John Harley, Isaac S. Kohane, Guergana Savova, Nancy Crimmins, Todd Lingren, Vidhu Thaker:
Developing an Algorithm to Detect Early Childhood Obesity in Two Tertiary Pediatric Medical Centers. Appl. Clin. Inform. 07(03): 693-706 (2016) - [j27]Danielle L. Mowery, Brett R. South, Lee M. Christensen, Jianwei Leng, Laura-Maria Peltonen, Sanna Salanterä, Hanna Suominen, David Martínez, Sumithra Velupillai, Noémie Elhadad, Guergana Savova, Sameer Pradhan, Wendy W. Chapman:
Normalizing acronyms and abbreviations to aid patient understanding of clinical texts: ShARe/CLEF eHealth Challenge 2013, Task 2. J. Biomed. Semant. 7: 43 (2016) - [j26]Chen Lin, Dmitriy Dligach, Timothy A. Miller, Steven Bethard, Guergana K. Savova:
Multilayered temporal modeling for the clinical domain. J. Am. Medical Informatics Assoc. 23(2): 387-395 (2016) - [j25]Jacqueline Kirby, Peter Speltz, Luke V. Rasmussen, Melissa A. Basford, Omri Gottesman, Peggy L. Peissig, Jennifer A. Pacheco, Gerard Tromp, Jyotishman Pathak, David S. Carrell, Stephen B. Ellis, Todd Lingren, William K. Thompson, Guergana Savova, Jonathan L. Haines, Dan M. Roden, Paul A. Harris, Joshua C. Denny:
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. J. Am. Medical Informatics Assoc. 23(6): 1046-1052 (2016) - [j24]Harry Hochheiser, Melissa Castine, David Harris, Guergana Savova, Rebecca S. Jacobson:
An information model for computable cancer phenotypes. BMC Medical Informatics Decis. Mak. 16: 121 (2016) - [c44]Stéphane M. Meystre, Hongfang Liu, Rong Xu, Sivaram Arabandi, Kavishwar B. Wagholikar, Jon D. Patrick, Guergana K. Savova, Chunhua Weng, Pierre Zweigenbaum, Dina Demner-Fushman, Özlem Uzuner, Hua Xu:
Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. AMIA 2016 - [c43]Timothy A. Miller, Dmitriy Dligach, Chen Lin, Steven Bethard, Guergana Savova:
Feature Portability in Cross-domain Clinical Coreference. AMIA 2016 - [c42]Timothy A. Miller, Dmitriy Dligach, Guergana Savova:
Unsupervised Document Classification with Informed Topic Models. BioNLP@ACL 2016: 83-91 - [c41]Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova:
Improving Temporal Relation Extraction with Training Instance Augmentation. BioNLP@ACL 2016: 108-113 - [c40]Steven Bethard, Guergana Savova, Wei-Te Chen, Leon Derczynski, James Pustejovsky, Marc Verhagen:
SemEval-2016 Task 12: Clinical TempEval. SemEval@NAACL-HLT 2016 - 2015
- [j23]Sameer Pradhan, Noémie Elhadad, Brett R. South, David Martínez, Lee M. Christensen, Amy Vogel, Hanna Suominen, Wendy W. Chapman, Guergana Savova:
Evaluating the state of the art in disorder recognition and normalization of the clinical narrative. J. Am. Medical Informatics Assoc. 22(1): 143-154 (2015) - [j22]Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo, Natalie S. Braggs, Andrew Cagan, Vivian S. Gainer, Joshua C. Denny, Guergana K. Savova:
Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. J. Am. Medical Informatics Assoc. 22(e1): e151-e161 (2015) - [c39]Dmitriy Dligach, Timothy A. Miller, Guergana Savova:
Semi-supervised Learning for Phenotyping Tasks. AMIA 2015 - [c38]Uri Kartoun, Vishesh Kumar, Su-Chun Cheng, Sheng Yu, Katherine P. Liao, Elizabeth W. Karlson, Ashwin N. Ananthakrishnan, Zongqi Xia, Vivian S. Gainer, Andrew Cagan, Guergana Savova, Pei J. Chen, Shawn N. Murphy, Susanne E. Churchill, Isaac S. Kohane, Peter Szolovits, Tianxi Cai, Stanley Y. Shaw:
Demonstrating the Advantages of Applying Data Mining Techniques on Time-Dependent Electronic Medical Records. AMIA 2015 - [c37]Timothy A. Miller, Sean Finan, Dmitriy Dligach, Guergana Savova:
Robust Sentence Segmentation for Clinical Text. AMIA 2015 - [c36]Guergana Savova, Rebecca S. Jacobson, Joshua C. Denny, Nicole L. Washington, Harry Hochheiser:
Natural Language Processing for Phenotype Extraction: Challenges in Extraction and Representation. AMIA 2015 - [c35]Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Chen Lin, Guergana Savova:
Extracting Time Expressions from Clinical Text. BioNLP@IJCNLP 2015: 81-91 - [c34]Noémie Elhadad, Sameer Pradhan, Sharon Lipsky Gorman, Suresh Manandhar, Wendy W. Chapman, Guergana K. Savova:
SemEval-2015 Task 14: Analysis of Clinical Text. SemEval@NAACL-HLT 2015: 303-310 - [c33]Steven Bethard, Leon Derczynski, Guergana Savova, James Pustejovsky, Marc Verhagen:
SemEval-2015 Task 6: Clinical TempEval. SemEval@NAACL-HLT 2015: 806-814 - 2014
- [j21]Dmitriy Dligach, Steven Bethard, Lee Becker, Timothy A. Miller, Guergana K. Savova:
Discovering body site and severity modifiers in clinical texts. J. Am. Medical Informatics Assoc. 21(3): 448-454 (2014) - [j20]William F. Styler IV, Steven Bethard, Sean Finan, Martha Palmer, Sameer Pradhan, Piet C. de Groen, Bradley James Erickson, Timothy A. Miller, Chen Lin, Guergana K. Savova, James Pustejovsky:
Temporal Annotation in the Clinical Domain. Trans. Assoc. Comput. Linguistics 2: 143-154 (2014) - [c32]Chen Lin, Timothy A. Miller, Alvin Kho, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Guergana Savova:
Descending-Path Convolution Kernel for Syntactic Structures. ACL (2) 2014: 81-86 - [c31]Sean Finan, Piet C. de Groen, Guergana Savova:
Narrative Event and Temporal Relation Visualization Tool. AMIA 2014 - [c30]Peter J. Haug, Xinzi Wu, Jeffrey P. Ferraro, Guergana Savova, Stanley M. Huff, Christopher G. Chute:
Developing a Section Labeler for Clinical Documents. AMIA 2014 - [c29]Aurélie Névéol, Hercules Dalianis, Guergana Savova, Pierre Zweigenbaum:
Clinical Natural Language Processing in Languages Other Than English. AMIA 2014 - [c28]Sumithra Velupillai, Danielle L. Mowery, Lee M. Christensen, Noemie Elhadad, Sameer Pradhan, Guergana K. Savova, Wendy W. Chapman:
Disease/Disorder Semantic Template Filling - Information Extraction Challenge in the ShARe/CLEF eHealth Evaluation Lab 2014. AMIA 2014 - [c27]Danielle L. Mowery, Sumithra Velupillai, Brett R. South, Lee M. Christensen, David Martínez, Liadh Kelly, Lorraine Goeuriot, Noémie Elhadad, Sameer Pradhan, Guergana K. Savova, Wendy W. Chapman:
Task 2: ShARe/CLEF eHealth Evaluation Lab 2014. CLEF (Working Notes) 2014: 31-42 - [c26]Sameer Pradhan, Noémie Elhadad, Wendy W. Chapman, Suresh Manandhar, Guergana Savova:
SemEval-2014 Task 7: Analysis of Clinical Text. SemEval@COLING 2014: 54-62 - 2013
- [j19]Stephen T. Wu, Vinod Kaggal, Dmitriy Dligach, James J. Masanz, Pei J. Chen, Lee Becker, Wendy Webber Chapman, Guergana K. Savova, Hongfang Liu, Christopher G. Chute:
A common type system for clinical natural language processing. J. Biomed. Semant. 4: 1 (2013) - [j18]Louise Deléger, Katalin Molnár, Guergana Savova, Fei Xia, Todd Lingren, Qi Li, Keith Marsolo, Anil G. Jegga, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Large-scale evaluation of automated clinical note de-identification and its impact on information extraction. J. Am. Medical Informatics Assoc. 20(1): 84-94 (2013) - [j17]Daniel Albright, Arrick Lanfranchi, Anwen Fredriksen, William F. Styler IV, Colin Warner, Jena D. Hwang, Jinho D. Choi, Dmitriy Dligach, Rodney D. Nielsen, James H. Martin, Wayne H. Ward, Martha Palmer, Guergana K. Savova:
Towards comprehensive syntactic and semantic annotations of the clinical narrative. J. Am. Medical Informatics Assoc. 20(5): 922-930 (2013) - [j16]Andrew J. McMurry, Britt Fitch, Guergana Savova, Isaac S. Kohane, Ben Y. Reis:
Improved de-identification of physician notes through integrative modeling of both public and private medical text. BMC Medical Informatics Decis. Mak. 13: 112 (2013) - [c25]Dmitriy Dligach, Timothy A. Miller, Guergana Savova:
Discovering Body Site and Severity Modifiers in Clinical Texts. AMIA 2013 - [c24]Chen Lin, Elizabeth W. Karlson, Helena Canhão, Timothy A. Miller, Dmitriy Dligach, Pei J. Chen, Raúl N. Pérez, Yuanyuan Shen, Michael E. Weinblatt, Nancy A. Shadick, Robert M. Plenge, Guergana Savova:
Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records. AMIA 2013 - [c23]Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Sameer Pradhan, Chen Lin, Guergana K. Savova:
Discovering Time Expressions in Clinical Text. AMIA 2013 - [c22]Guergana Savova, Wendy Webber Chapman, Noemie Elhadad, Martha Palmer:
Panel: Shared Resources, Shared Code, and Shared Activities in Clinical Natural Language Processing. AMIA 2013 - [c21]Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Chen Lin, Guergana Savova:
Discovering Temporal Narrative Containers in Clinical Text. BioNLP@ACL 2013: 18-26 - [c20]Danielle L. Mowery, Brett R. South, Lee M. Christensen, Laura-Maria Murtola, Sanna Salanterä, Hanna Suominen, David Martínez, Noémie Elhadad, Sameer Pradhan, Guergana K. Savova, Wendy W. Chapman:
Task 2: ShARe/CLEF eHealth Evaluation Lab 2013. CLEF (Working Notes) 2013 - [c19]Sameer Pradhan, Noémie Elhadad, Brett R. South, David Martínez, Lee M. Christensen, Amy Vogel, Hanna Suominen, Wendy W. Chapman, Guergana K. Savova:
Task 1: ShARe/CLEF eHealth Evaluation Lab 2013. CLEF (Working Notes) 2013 - [c18]Hanna Suominen, Sanna Salanterä, Sumithra Velupillai, Wendy Webber Chapman, Guergana K. Savova, Noemie Elhadad, Sameer Pradhan, Brett R. South, Danielle L. Mowery, Gareth J. F. Jones, Johannes Leveling, Liadh Kelly, Lorraine Goeuriot, David Martínez, Guido Zuccon:
Overview of the ShARe/CLEF eHealth Evaluation Lab 2013. CLEF 2013: 212-231 - [c17]Dmitriy Dligach, Timothy A. Miller, Guergana Savova:
Active Learning for Phenotyping Tasks. RANLP (Medicine and Biology) 2013: 1-8 - [e2]Guergana Savova, Kevin Bretonnel Cohen, Galia Angelova:
Proceedings of the Workshop on NLP for Medicine and Biology associated with RANLP 2013, Hissar, Bulgaria, September 13, 2013. INCOMA Ltd. Shoumen, BULGARIA 2013, ISBN 978-954-452-024-3 [contents] - 2012
- [j15]Jiaping Zheng, Wendy Webber Chapman, Timothy A. Miller, Chen Lin, Rebecca S. Crowley, Guergana K. Savova:
A system for coreference resolution for the clinical narrative. J. Am. Medical Informatics Assoc. 19(4): 660-667 (2012) - [j14]Guergana K. Savova, Janet E. Olson, Sean P. Murphy, Victoria L. Cafourek, Fergus J. Couch, Matthew P. Goetz, James N. Ingle, Vera J. Suman, Christopher G. Chute, Richard M. Weinshilboum:
Automated discovery of drug treatment patterns for endocrine therapy of breast cancer within an electronic medical record. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j13]Wendy Webber Chapman, Guergana K. Savova, Jiaping Zheng, Melissa Tharp, Rebecca S. Crowley:
Anaphoric reference in clinical reports: Characteristics of an annotated corpus. J. Biomed. Informatics 45(3): 507-521 (2012) - [j12]Susan Rea, Jyotishman Pathak, Guergana K. Savova, Thomas A. Oniki, Les Westberg, Calvin E. Beebe, Cui Tao, Craig G. Parker, Peter J. Haug, Stanley M. Huff, Christopher G. Chute:
Building a robust, scalable and standards-driven infrastructure for secondary use of EHR data: The SHARPn project. J. Biomed. Informatics 45(4): 763-771 (2012) - [c16]Timothy A. Miller, Dmitriy Dligach, Guergana Savova:
Active Learning for Coreference Resolution. BioNLP@HLT-NAACL 2012: 73-81 - 2011
- [j11]Guergana K. Savova, Wendy Webber Chapman, Jiaping Zheng, Rebecca S. Crowley:
Anaphoric relations in the clinical narrative: corpus creation. J. Am. Medical Informatics Assoc. 18(4): 459-465 (2011) - [j10]Wendy Webber Chapman, Prakash M. Nadkarni, Lynette Hirschman, Leonard W. D'Avolio, Guergana K. Savova, Özlem Uzuner:
Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J. Am. Medical Informatics Assoc. 18(5): 540-543 (2011) - [j9]Sunghwan Sohn, Jean-Pierre A. Kocher, Christopher G. Chute, Guergana K. Savova:
Drug side effect extraction from clinical narratives of psychiatry and psychology patients. J. Am. Medical Informatics Assoc. 18(Supplement): 144-149 (2011) - [j8]Jiaping Zheng, Wendy Webber Chapman, Rebecca S. Crowley, Guergana K. Savova:
Coreference resolution: A review of general methodologies and applications in the clinical domain. J. Biomed. Informatics 44(6): 1113-1122 (2011) - 2010
- [j7]Guergana K. Savova, James J. Masanz, Philip V. Ogren, Jiaping Zheng, Sunghwan Sohn, Karin Kipper Schuler, Christopher G. Chute:
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications. J. Am. Medical Informatics Assoc. 17(5): 507-513 (2010) - [j6]Iftikhar J. Kullo, Jin Fan, Jyotishman Pathak, Guergana K. Savova, Zeenat Ali, Christopher G. Chute:
Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease. J. Am. Medical Informatics Assoc. 17(5): 568-574 (2010) - [j5]Lionel Tim-Ee Cheng, Jiaping Zheng, Guergana K. Savova, Bradley James Erickson:
Discerning Tumor Status from Unstructured MRI Reports - Completeness of Information in Existing Reports and Utility of Automated Natural Language Processing. J. Digit. Imaging 23(2): 119-132 (2010) - [c15]Rodney D. Nielsen, James J. Masanz, Philip V. Ogren, Wayne H. Ward, James H. Martin, Guergana K. Savova, Martha Palmer:
An architecture for complex clinical question answering. IHI 2010: 395-399 - [c14]Cui Tao, Harold R. Solbrig, Deepak K. Sharma, Wei-Qi Wei, Guergana K. Savova, Christopher G. Chute:
Time-Oriented Question Answering from Clinical Narratives Using Semantic-Web Techniques. ISWC (2) 2010: 241-256
2000 – 2009
- 2009
- [j4]Anni Coden, Guergana K. Savova, Igor L. Sominsky, Michael A. Tanenblatt, James J. Masanz, Karin Schuler, James W. Cooper, Wei Guan, Piet C. de Groen:
Automatically extracting cancer disease characteristics from pathology reports into a Disease Knowledge Representation Model. J. Biomed. Informatics 42(5): 937-949 (2009) - [c13]Guergana Savova, Steven Bethard, William F. Styler IV, James H. Martin, Martha Palmer, James J. Masanz, Wayne H. Ward:
Towards Temporal Relation Discovery from the Clinical Narrative. AMIA 2009 - [c12]Sunghwan Sohn, Guergana K. Savova:
Mayo Clinic Smoking Status Classification System: Extensions and Improvements. AMIA 2009 - [e1]Guergana Savova, Vangelis Karkaletsis, Galia Angelova:
Proceedings of the Workshop on Biomedical Information Extraction@RANLP 2009, Borovets, Bulgaria, September 18, 2009. Association for Computational Linguistics 2009 [contents] - 2008
- [j3]Guergana K. Savova, Philip V. Ogren, Patrick H. Duffy, James D. Buntrock, Christopher G. Chute:
Technical Brief: Mayo Clinic NLP System for Patient Smoking Status Identification. J. Am. Medical Informatics Assoc. 15(1): 25-28 (2008) - [j2]Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute:
Word sense disambiguation across two domains: Biomedical literature and clinical notes. J. Biomed. Informatics 41(6): 1088-1100 (2008) - [c11]Dingcheng Li, Guergana Savova, Karin Kipper Schuler:
Conditional Random Fields and Support Vector Machines for Disorder Named Entity Recognition in Clinical Texts. BioNLP 2008: 94-95 - [c10]Philip V. Ogren, Guergana K. Savova, Christopher G. Chute:
Constructing Evaluation Corpora for Automated Clinical Named Entity Recognition. LREC 2008 - [c9]Karin Schuler, Vinod Kaggal, James J. Masanz, Philip V. Ogren, Guergana K. Savova:
System Evaluation on a Named Entity Corpus from Clinical Notes. LREC 2008 - 2006
- [c8]Philip V. Ogren, Guergana Savova, James D. Buntrock, Christopher G. Chute:
Building and Evaluating Annotated Corpora for Medical NLP Systems. AMIA 2006 - 2005
- [c7]Shana Watters, Brian McInnes, David McKoskey, Timothy A. Miller, Daniel Boley, Maria L. Gini, William Schuler, A. Polukeyeva, Jeanette K. Gundel, Sergey V. Pakhomov, Guergana Savova:
Using Volunteers to Annotate Biomedical Corpora for Anaphora Resolution. AAAI Spring Symposium: Knowledge Collection from Volunteer Contributors 2005: 117- - [c6]Guergana Savova, Marcelline R. Harris, Serguei Pakhomov, Christopher G. Chute:
Frame Semantics and the Domain of Functioning, Disability and Health. AMIA 2005 - 2003
- [j1]Marcelline R. Harris, Guergana K. Savova, Thomas M. Johnson, Christopher G. Chute:
A term extraction tool for expanding content in the domain of functioning, disability, and health: proof of concept. J. Biomed. Informatics 36(4-5): 250-259 (2003) - [c5]Marcelline R. Harris, Hyeoneui Kim, Lori Rhudy, Guergana Savova, Christopher G. Chute:
Testing the Generalizability of the ISO Model for Nursing Diagnoses. AMIA 2003 - [c4]Guergana K. Savova, Marcelline R. Harris, Thomas M. Johnson, Serguei V. S. Pakhomov, Christopher G. Chute:
A Data-Driven Approach for Extracting "the Most Specific Term" for Ontology Development. AMIA 2003 - [c3]Guergana K. Savova, Joan Bachenko:
Prosodic features of four types of disfluencies. DiSS 2003: 91-94 - [c2]Guergana K. Savova, Joan Bachenko:
Designing for errors: similarities and differences of disfluency rates and prosodic characteristics across domains. INTERSPEECH 2003: 229-232 - 2000
- [c1]Guergana Savova, Michael Schonwetter, Sergey V. Pakhomov:
Improving language model perplexity and recognition accuracy for medical dictations via within-domain interpolation with literal and semi-literal corpora. INTERSPEECH 2000: 206-209
Coauthor Index
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