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ORCIDJudith Klein-Seetharaman
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- affiliation: University of Warwick, Warwick Medical School, UK
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2020 – today
- 2024
[i1]Abdullah Mamun, Lawrence D. Devoe, Mark I. Evans, David W. Britt, Judith Klein-Seetharaman, Hassan Ghasemzadeh:
Use of What-if Scenarios to Help Explain Artificial Intelligence Models for Neonatal Health. CoRR abs/2410.09635 (2024)- 2023
- [c18]Abdullah Mamun
, Chia-Cheng Kuo, David W. Britt, Lawrence D. Devoe, Mark I. Evans, Hassan Ghasemzadeh, Judith Klein-Seetharaman:
Neonatal Risk Modeling and Prediction. BSN 2023: 1-4 - 2022
- [j16]Abraham Asfaw, Alexandre Blais, Kenneth R. Brown, Jonathan Candelaria, Christopher Cantwell, Lincoln D. Carr, Joshua Combes, Dripto M. Debroy, John M. Donohue, Sophia E. Economou, Emily Edwards, Michael F. J. Fox, Steven M. Girvin, Alan Ho, Hilary M. Hurst, Zubin Jacob, Blake R. Johnson, Ezekiel Johnston-Halperin, Robert Joynt, Eliot Kapit, Judith Klein-Seetharaman, Martin Laforest, H. J. Lewandowski, Theresa W. Lynn, Corey Rae H. McRae, Celia Merzbacher, Spyridon Michalakis, Prineha Narang, William D. Oliver, Jens Palsberg, David P. Pappas, Michael G. Raymer, David J. Reilly, Mark Saffman, Thomas A. Searles, Jeffrey H. Shapiro, Chandralekha Singh:
Building a Quantum Engineering Undergraduate Program. IEEE Trans. Educ. 65(2): 220-242 (2022) - 2021
- [c17]Meghana Kshirsagar, Nure Tasnina, Michael D. Ward, Jeffrey N. Law, T. M. Murali, Juan M. Lavista Ferres, Gregory R. Bowman, Judith Klein-Seetharaman:
Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome. PSB 2021 - [c16]Lenore J. Cowen, Judith Klein-Seetharaman, Hollie Putnam:
Bioinformatics of corals: Investigating heterogeneous omics data from coral holobionts for insight into reef health and resillience. PSB 2021
2010 – 2019
- 2017
- [j15]Meghana Kshirsagar, Keerthiram Murugesan, Jaime G. Carbonell, Judith Klein-Seetharaman:
Multitask Matrix Completion for Learning Protein Interactions Across Diseases. J. Comput. Biol. 24(6): 501-514 (2017) - [j14]Narinder Sanghera, Alexander Anderson, Nick Nuar, Can Xie, Daniel Mitchell, Judith Klein-Seetharaman:
Insulin biosensor development: a case study. Int. J. Parallel Emergent Distributed Syst. 32(1): 119-138 (2017) - 2016
- [c15]Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan:
Multitask Matrix Completion for Learning Protein Interactions Across Diseases. RECOMB 2016: 53-64 - 2015
- [c14]Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman:
Refining Literature Curated Protein Interactions Using Expert Opinions. Pacific Symposium on Biocomputing 2015: 318-329 - 2013
- [j13]Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman:
Multitask learning for host-pathogen protein interactions. Bioinform. 29(13): 217-226 (2013) - 2012
- [j12]Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman:
Techniques to cope with missing data in host-pathogen protein interaction prediction. Bioinform. 28(18): 466-472 (2012) - [j11]Javier García-García, Sylvia Schleker, Judith Klein-Seetharaman, Baldo Oliva:
BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference. Nucleic Acids Res. 40(Web-Server-Issue): 147-151 (2012) - [j10]Nevenka Dimitrova, Judith Klein-Seetharaman, Peter Beyerlein, Ahmed H. Tewfik:
Signal Processing in Genomics and Proteomics: Defining Its Role [From the Guest Editors]. IEEE Signal Process. Mag. 29(1): 19-21 (2012) - [c13]Ilia Nouretdinov, Alex Gammerman, Yanjun Qi, Judith Klein-Seetharaman:
Determining Confidence of Predicted Interactions Between HIV-1 and Human Proteins Using Conformal Method. Pacific Symposium on Biocomputing 2012: 311-322 - 2011
- [j9]Zhongming Zhao, Junfeng Xia, Öznur Tastan, Irtisha Singh, Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman:
Virus interactions with human signal transduction pathways. Int. J. Comput. Biol. Drug Des. 4(1): 83-105 (2011) - 2010
- [j8]Yanjun Qi, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman, Jason Weston:
Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins. Bioinform. 26(18) (2010) - [c12]Irtisha Singh, Öznur Tastan, Judith Klein-Seetharaman:
Comparison of virus interactions with human signal transduction pathways. BCB 2010: 17-24 - [c11]Subhodeep Moitra, Naveena Yanamala, Öznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman:
Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments. SoSE 2010: 1-7
2000 – 2009
- 2009
- [c10]Sivaraman Balakrishnan, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman:
Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1. GENSiPS 2009: 1-4 - [c9]Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman:
Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration. Pacific Symposium on Biocomputing 2009: 516-527 - 2008
- [j7]Madhavi Ganapathiraju, Narayanaswamy Balakrishnan, Raj Reddy, Judith Klein-Seetharaman:
Transmembrane helix prediction using amino acid property features and latent semantic analysis. BMC Bioinform. 9(S-1) (2008) - [j6]Naveena Yanamala, Kalyan C. Tirupula, Judith Klein-Seetharaman:
Preferential binding of allosteric modulators to active and inactive conformational states of metabotropic glutamate receptors. BMC Bioinform. 9(S-1) (2008) - [c8]Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph:
Protein complex identification by supervised graph local clustering. ISMB 2008: 250-268 - 2007
- [j5]Madhavi Ganapathiraju, Christopher Jon Jursa, Hassan A. Karimi, Judith Klein-Seetharaman:
TMpro web server and web service: transmembrane helix prediction through amino acid property analysis. Bioinform. 23(20): 2795-2796 (2007) - [j4]Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph:
A mixture of feature experts approach for protein-protein interaction prediction. BMC Bioinform. 8(S-10) (2007) - 2006
- [p1]Madhavi Ganapathiraju, Vijayalaxmi Manoharan, Raj Reddy, Judith Klein-Seetharaman:
Collaborative Discovery Through Biological Language Modeling Interface. Ambient Intelligence in Everyday 2006: 300-321 - 2005
- [j3]Yang Cai, Ingo Snel, Betty Cheng, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman:
BioSim--a biomedical character-based problem solving environment. Future Gener. Comput. Syst. 21(7): 1145-1156 (2005) - [c7]Betty Yee Man Cheng, Jaime G. Carbonell, Judith Klein-Seetharaman:
A Machine Text-Inspired Machine Learning Approach for Identification of Transmembrane Helix Boundaries. ISMIS 2005: 29-37 - [c6]Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph:
Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources. Pacific Symposium on Biocomputing 2005 - 2004
- [j2]Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan:
Comparison of probabilistic combination methods for protein secondary structure prediction. Bioinform. 20(17): 3099-3107 (2004) - [j1]Madhavi K. Ganapathiraju, Judith Klein-Seetharaman, Narayanaswamy Balakrishnan, Raj Reddy:
Characterization of protein secondary structure. IEEE Signal Process. Mag. 21(3): 78-87 (2004) - [c5]Madhavi Ganapathiraju, Narayanas Balakrishnan, Raj Reddy, Judith Klein-Seetharaman:
Computational Biology and Language. Ambient Intelligence for Scientific Discovery 2004: 25-47 - [c4]Yang Cai, Judith Klein-Seetharaman:
Ambient intelligence for scientific discovery. CHI Extended Abstracts 2004: 1705-1706 - [c3]Deborah K. Weisser, Judith Klein-Seetharaman:
Identification of fundamental building blocks in protein sequences using statistical association measures. SAC 2004: 154-161 - [c2]Yan Liu, Jaime G. Carbonell, Judith Klein-Seetharaman, Vanathi Gopalakrishnan:
Context sensitive vocabulary and its application in protein secondary structure prediction. SIGIR 2004: 538-539 - 2003
- [c1]Yang Cai, Ingo Snel, B. Suman Bharathi, Clementine Klein, Judith Klein-Seetharaman:
Towards Biomedical Problem Solving in a Game Environment. International Conference on Computational Science 2003: 1005-1014
Coauthor Index
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