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ORCIDB. F. Francis Ouellette
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2020 – today
- 2023
[j32]Patricia M. Palagi
, Russell Schwartz, Scott Markel, B. F. Francis Ouellette:
Ten simple rules for writing a PLOS Computational Biology quick tips article. PLoS Comput. Biol. 19(12) (2023)- 2020
- [j31]Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks:
Genomic basis for RNA alterations in cancer. Nat. 578(7793): 129-136 (2020)
2010 – 2019
- 2018
- [j30]Michal Krassowski, Marta Paczkowska, Kim Cullion, Tina Huang, Irakli Dzneladze, B. F. Francis Ouellette, Joseph Tadashi Yamada, Amelie Fradet-Turcotte, Jüri Reimand:
ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins. Nucleic Acids Res. 46(Database-Issue): D901-D910 (2018) - 2016
- [j29]Michelle D. Brazas, B. F. Francis Ouellette:
Continuing Education Workshops in Bioinformatics Positively Impact Research and Careers. PLoS Comput. Biol. 12(6) (2016) - 2015
- [j28]Aidan Budd, Manuel Corpas, Michelle D. Brazas, Jonathan C. Fuller, Jeremy Goecks, Nicola J. Mulder, Magali Michaut, B. F. Francis Ouellette, Aleksandra Pawlik, Niklas Blomberg:
A Quick Guide for Building a Successful Bioinformatics Community. PLoS Comput. Biol. 11(2) (2015) - 2013
- [j27]Michelle D. Brazas, B. F. Francis Ouellette:
Navigating the changing learning landscape: perspective from bioinformatics.ca. Briefings Bioinform. 14(5): 556-562 (2013) - [j26]Joanne A. Fox, B. F. Francis Ouellette:
Education in Computational Biology Today and Tomorrow. PLoS Comput. Biol. 9(12) (2013) - 2012
- [j25]Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder:
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012) - [j24]Warren A. Cheung, B. F. Francis Ouellette, Wyeth W. Wasserman:
Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs). BMC Bioinform. 13: 249 (2012) - [j23]Michelle D. Brazas, David S. Yim, Winston Yeung, B. F. Francis Ouellette:
A decade of web server updates at the bioinformatics links directory: 2003-2012. Nucleic Acids Res. 40(Web-Server-Issue): 3-12 (2012) - 2011
- [j22]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Database J. Biol. Databases Curation 2011 (2011) - [j21]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - [j20]Michelle D. Brazas, David S. Yim, Joseph Tadashi Yamada, B. F. Francis Ouellette:
The 2011 bioinformatics links directory update: more resources, tools and databases and features to empower the bioinformatics community. Nucleic Acids Res. 39(Web-Server-Issue): 3-7 (2011) - [j19]Kelvin Xi Zhang, B. F. Francis Ouellette:
CAERUS: Predicting CAncER oUtcomeS Using Relationship between Protein Structural Information, Protein Networks, Gene Expression Data, and Mutation Data. PLoS Comput. Biol. 7(3) (2011) - 2010
- [j18]Kelvin Xi Zhang, B. F. Francis Ouellette:
Pandora, a PAthway and Network DiscOveRy Approach based on common biological evidence. Bioinform. 26(4): 529-535 (2010) - [j17]Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette:
Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory. Nucleic Acids Res. 38(Web-Server-Issue): 3-6 (2010)
2000 – 2009
- 2009
- [j16]David Landsman, Robert Gentleman, Janet Kelso, B. F. Francis Ouellette:
DATABASE: A new forum for biological databases and curation. Database J. Biol. Databases Curation 2009 (2009) - [j15]Kelvin Xi Zhang, B. F. Francis Ouellette:
GAIA: a gram-based interaction analysis tool - an approach for identifying interacting domains in yeast. BMC Bioinform. 10(S-1) (2009) - [j14]Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette:
Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory. Nucleic Acids Res. 37(Web-Server-Issue): 3-5 (2009) - 2008
- [j13]Michelle D. Brazas, Joanne A. Fox, Timothy Brown, Scott McMillan, B. F. Francis Ouellette:
Keeping pace with the data: 2008 update on the Bioinformatics Links Directory. Nucleic Acids Res. 36(Web-Server-Issue): 2-4 (2008) - [c2]Kelvin Xi Zhang, B. F. Francis Ouellette:
A new approach to predict interactions between integral membrane proteins in yeast. IEEE Congress on Evolutionary Computation 2008: 1801-1806 - 2007
- [j12]Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette:
Conducting Research on the Web: 2007 Update for the Bioinformatics Links Directory. Nucleic Acids Res. 35(Web-Server-Issue): 3-5 (2007) - [c1]Nawar Malhis, Kelvin Xi Zhang, B. F. Francis Ouellette:
Detecting Protein-Domains DNA-Motifs Association in Saccharomyces cerevisiae Regulatory Networks. AINA Workshops (1) 2007: 639-644 - 2006
- [j11]Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette:
A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory. Nucleic Acids Res. 34(Web-Server-Issue): 3-5 (2006) - 2005
- [j10]Sohrab P. Shah, Yong Huang, Tao Xu, Macaire Man Saint Yuen, John Ling, B. F. Francis Ouellette:
Atlas - a data warehouse for integrative bioinformatics. BMC Bioinform. 6: 34 (2005) - [j9]Perseus I. Missirlis, Carri-Lyn R. Mead, Stefanie L. Butland, B. F. Francis Ouellette, Rebecca S. Devon, Blair R. Leavitt, Robert A. Holt:
Satellog: A database for the identification and prioritization of satellite repeats in disease association studies. BMC Bioinform. 6: 145 (2005) - [j8]C. Alfarano, C. E. Andrade, K. Anthony, N. Bahroos, Martha Bajec, K. Bantoft, Doron Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, Ian M. Donaldson, D. Dorairajoo, Michel Justin Dumontier, M. R. Dumontier, V. Earles, R. Farrall, Howard J. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, Robin Haw, A. Hrvojic, L. Hurrell, Ruth Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, Benjamin D. Parker, Greg Pintilie, R. Pirone, John J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, Kevin A. Snyder, R. Stasiuk, D. Strumpf, Brigitte Tuekam, S. Tao, Z. Wang, M. White, R. Willis, Cheryl Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, Shudong Zhang, K. Zheng, Tony Pawson, B. F. Francis Ouellette, Christopher W. V. Hogue:
The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Res. 33(Database-Issue): 418-424 (2005) - [j7]Joanne A. Fox, Stefanie L. Butland, Scott McMillan, Graeme Campbell, B. F. Francis Ouellette:
The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers. Nucleic Acids Res. 33(Web-Server-Issue): 3-24 (2005) - 2004
- [j6]Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald T. Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette:
Pegasys: software for executing and integrating analyses of biological sequences. BMC Bioinform. 5: 40 (2004) - 2003
- [j5]Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette:
GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results. Bioinform. 19(10): 1296-1297 (2003) - 2002
- [j4]Sanja Rogic, B. F. Francis Ouellette, Alan K. Mackworth:
Improving gene recognition accuracy by combining predictions from two gene-finding programs. Bioinform. 18(8): 1034-1045 (2002) - 2001
- [j3]Gary D. Bader, Ian M. Donaldson, Cheryl Wolting, B. F. Francis Ouellette, Tony Pawson, Christopher W. V. Hogue:
BIND - The Biomolecular Interaction Network Database. Nucleic Acids Res. 29(1): 242-245 (2001)
1990 – 1999
- 1999
- [j2]Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette, Barbara A. Rapp, David L. Wheeler:
GenBank. Nucleic Acids Res. 27(1): 12-17 (1999) - 1998
- [j1]Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette:
GenBank. Nucleic Acids Res. 26(1): 1-7 (1998)
Coauthor Index
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