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2020 – today
- 2024
[j22]Daniel Faria, Patrícia Eugénio
, Marta Contreiras Silva, Laura Balbi, Georges Bedran, Ashwin Adrian Kallor, Susana Nunes, Aleksander Palkowski, Michal Waleron, Javier Antonio Alfaro, Catia Pesquita:
The Immunopeptidomics Ontology (ImPO). Database J. Biol. Databases Curation 2024 (2024)- [j21]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Explaining protein-protein interactions with knowledge graph-based semantic similarity. Comput. Biol. Medicine 170: 108076 (2024) - [j20]Bo Fu, Patrick Lambrix, Catia Pesquita:
Editorial: Special issue on Interactive Semantic Web. Semantic Web 15(5): 1517-1518 (2024) - [j19]Da Yan, Catia Pesquita, Carsten Görg, Jake Y. Chen:
Guest Editorial Selected Papers From BIOKDD 2022. IEEE ACM Trans. Comput. Biol. Bioinform. 21(5): 1165-1167 (2024) - [c77]Ricardo Miguel Serafim de Carvalho, Catia Pesquita, Andreia Sofia Teixeira:
Building a Temporal Knowledge Graph for Electronic Health Records. DAO-XAI@ECAI 2024 - [c76]Susana Nunes, Catia Pesquita:
Drug Repurposing Hypothesis Validation with Knowledge-infused Explanations. DAO-XAI@ECAI 2024 - [c75]Marta Contreiras Silva, Daniel Faria, Catia Pesquita:
Complex Multi-Ontology Alignment Through Geometric Operations on Language Embeddings. ECAI 2024: 1333-1340 - [e18]Bo Fu, Patrick Lambrix, Huanyu Li, Susana Nunes, Catia Pesquita:
Proceedings of the 9th International Workshop on the Visualization and Interaction for Ontologies, Linked Data and Knowledge Graphs co-located with the 23rd International Semantic Web Conference (ISWC 2024), Baltimore, USA, November 12, 2024. CEUR Workshop Proceedings 3773, CEUR-WS.org 2024 [contents] - 2023
- [j18]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Supervised Biomedical Semantic Similarity. IEEE Access 11: 60635-60645 (2023) - [j17]Susana Nunes, Rita Torres Sousa, Catia Pesquita:
Multi-domain knowledge graph embeddings for gene-disease association prediction. J. Biomed. Semant. 14(1): 11 (2023) - [j16]Ricardo M. S. Carvalho, Daniela Oliveira, Catia Pesquita:
Knowledge Graph Embeddings for ICU readmission prediction. BMC Medical Informatics Decis. Mak. 23(1): 12 (2023) - [j15]Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma:
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. TGDK 1(1): 5:1-5:33 (2023) - [c74]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Benchmark Datasets for Biomedical Knowledge Graphs with Negative Statements. SeWeBMeDA@ESWC 2023 - [c73]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Explainable Representations for Relation Prediction in Knowledge Graphs. KR 2023: 635-646 - [c72]Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2023. OM@ISWC 2023: 97-139 - [c71]Daniel Faria, Marta Contreiras Silva, Pedro Cotovio, Lucas Ferraz, Laura Balbi, Catia Pesquita:
Results for Matcha and Matcha-DL in OAEI 2023. OM@ISWC 2023: 164-169 - [c70]Rita Torres Sousa, Sara Silva, Heiko Paulheim, Catia Pesquita:
Biomedical Knowledge Graph Embeddings with Negative Statements. ISWC 2023: 428-446 - [e17]Mehwish Alam, Cássia Trojahn, Sven Hertling, Catia Pesquita, Christian Aebeloe, Hidir Aras, Amr Azzam, Juan Cano, John Domingue, Simon Gottschalk, Olaf Hartig, Katja Hose, Sabrina Kirrane, Pasquale Lisena, Francesco Osborne, Philipp D. Rohde, Luc Steels, Ruben Taelman, Aisling Third, Ilaria Tiddi, Rima Türker:
Joint Proceedings of the ESWC 2023 Workshops and Tutorials co-located with 20th European Semantic Web Conference (ESWC 2023), Hersonissos, Greece, May 28-29, 2023. CEUR Workshop Proceedings 3443, CEUR-WS.org 2023 [contents] - [e16]Catia Pesquita, Ernesto Jiménez-Ruiz, Jamie P. McCusker, Daniel Faria, Mauro Dragoni, Anastasia Dimou, Raphaël Troncy, Sven Hertling:
The Semantic Web - 20th International Conference, ESWC 2023, Hersonissos, Crete, Greece, May 28 - June 1, 2023, Proceedings. Lecture Notes in Computer Science 13870, Springer 2023, ISBN 978-3-031-33454-2 [contents] - [e15]Catia Pesquita, Hala Skaf-Molli, Vasilis Efthymiou, Sabrina Kirrane, Axel Ngonga, Diego Collarana, Renato Cerqueira, Mehwish Alam, Cássia Trojahn, Sven Hertling:
The Semantic Web: ESWC 2023 Satellite Events - Hersonissos, Crete, Greece, May 28 - June 1, 2023, Proceedings. Lecture Notes in Computer Science 13998, Springer 2023, ISBN 978-3-031-43457-0 [contents] - [e14]Bo Fu, Patrick Lambrix, Huanyu Li, Susana Nunes, Catia Pesquita:
Proceedings of the 8th International Workshop on the Visualization and Interaction for Ontologies, Linked Data and Knowledge Graphs co-located with the 22nd International Semantic Web Conference (ISWC 2023), Athens, Greece, November 6, 2023. CEUR Workshop Proceedings 3508, CEUR-WS.org 2023 [contents] - [i8]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Explainable Representations for Relation Prediction in Knowledge Graphs. CoRR abs/2306.12687 (2023) - [i7]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Benchmark datasets for biomedical knowledge graphs with negative statements. CoRR abs/2307.11719 (2023) - [i6]Rita Torres Sousa, Sara Silva, Heiko Paulheim, Catia Pesquita:
Biomedical Knowledge Graph Embeddings with Negative Statements. CoRR abs/2308.03447 (2023) - [i5]Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma:
Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities. CoRR abs/2309.17255 (2023) - [i4]Pedro Giesteira Cotovio, Ernesto Jiménez-Ruiz, Catia Pesquita:
What can knowledge graph alignment gain with Neuro-Symbolic learning approaches? CoRR abs/2310.07417 (2023) - 2022
- [c69]Ruben Branco, Diogo F. Soares, Andreia S. Martins, Eleonora Auletta, Eduardo N. Castanho, Susana Nunes, Filipa Serrano, Rita Torres Sousa, Catia Pesquita, Sara C. Madeira, Helena Aidos:
Hierarchical Modelling for ALS Prognosis: Predicting the Progression Towards Critical Events. CLEF (Working Notes) 2022: 1211-1227 - [c68]Susana Nunes, Rita Torres Sousa, Filipa Serrano, Ruben Branco, Diogo F. Soares, Andreia S. Martins, Eleonora Auletta, Eduardo N. Castanho, Sara C. Madeira, Helena Aidos, Catia Pesquita:
Explaining Artificial Intelligence Predictions of Disease Progression with Semantic Similarity. CLEF (Working Notes) 2022: 1256-1268 - [c67]Marta Contreiras Silva, Daniel Faria, Catia Pesquita:
Extending AgreementMakerLight to Perform Holistic Ontology Matching. ESWC (Satellite Events) 2022: 31-35 - [c66]Rita Torres Sousa, Sara Silva, Catia Pesquita:
The Supervised Semantic Similarity Toolkit. ESWC (Satellite Events) 2022: 42-46 - [c65]Marta Contreiras Silva, Daniel Faria, Catia Pesquita:
Matching Multiple Ontologies to Build a Knowledge Graph for Personalized Medicine. ESWC 2022: 461-477 - [c64]Da Yan, Catia Pesquita, Carsten Görg, Jake Y. Chen, Mohammed J. Zaki:
21th International Workshop on Data Mining in Bioinformatics (BIOKDD 2022). KDD 2022: 4910-4911 - [c63]Filipa Serrano, Susana Nunes, Catia Pesquita:
VOWLExplain: Knowledge Graph visualization for Explainable Artificial Intelligence. VOILA@ISWC 2022: 29-40 - [c62]Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Cássia Trojahn, Chantelle Verhey, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2022. OM@ISWC 2022: 84-128 - [c61]Daniel Faria, Marta Contreiras Silva, Pedro Cotovio, Patrícia Eugénio, Catia Pesquita:
Matcha and Matcha-DL results for OAEI 2022. OM@ISWC 2022: 197-201 - [c60]Catia Pesquita:
Powering Biomedical Artificial Intelligence with a Holistic Knowledge Graph (invited talk). SeWeBMeDA@ESWC 2022 - [c59]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Towards Supervised Biomedical Semantic Similarity. SeWeBMeDA@ESWC 2022 - [e13]Claudine Géhin, Bruno Wacogne, Alexandre Douplik, Ronny Lorenz, Bethany K. Bracken, Catia Pesquita, Ana Fred, Hugo Gamboa:
Biomedical Engineering Systems and Technologies - 14th International Joint Conference, BIOSTEC 2021, Virtual Event, February 11-13, 2021, Revised Selected Papers. Communications in Computer and Information Science 1710, Springer 2022, ISBN 978-3-031-20663-4 [contents] - [e12]Paul Groth, Maria-Esther Vidal, Fabian M. Suchanek, Pedro A. Szekely, Pavan Kapanipathi, Catia Pesquita, Hala Skaf-Molli, Minna Tamper:
The Semantic Web - 19th International Conference, ESWC 2022, Hersonissos, Crete, Greece, May 29 - June 2, 2022, Proceedings. Lecture Notes in Computer Science 13261, Springer 2022, ISBN 978-3-031-06980-2 [contents] - [e11]Ernesto Jiménez-Ruiz, Vasilis Efthymiou, Jiaoyan Chen, Vincenzo Cutrona, Oktie Hassanzadeh, Juan Sequeda, Kavitha Srinivas, Nora Abdelmageed, Madelon Hulsebos, Daniela Oliveira, Catia Pesquita:
Proceedings of the Semantic Web Challenge on Tabular Data to Knowledge Graph Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), Virtual conference, October 27, 2021. CEUR Workshop Proceedings 3103, CEUR-WS.org 2022 [contents] - [e10]Bo Fu, Patrick Lambrix, Catia Pesquita:
Proceedings of the Seventh International Workshop on the Visualization and Interaction for Ontologies and Linked Data co-located with the 21st International Semantic Web Conference (ISWC 2022), Virtual Event, Hangzhou, China, October 23, 2022. CEUR Workshop Proceedings 3253, CEUR-WS.org 2022 [contents] - 2021
- [c58]Catia Pesquita:
Towards Semantic Integration for Explainable Artificial Intelligence in the Biomedical Domain. HEALTHINF 2021: 747-753 - [c57]Rita Torres Sousa, Sara Silva, Catia Pesquita:
evoKGsim+: A Framework for Tailoring Knowledge Graph-Based Similarity for Supervised Learning. ESWC (Satellite Events) 2021: 141-146 - [c56]Vincenzo Cutrona, Jiaoyan Chen, Vasilis Efthymiou, Oktie Hassanzadeh, Ernesto Jiménez-Ruiz, Juan Sequeda, Kavitha Srinivas, Nora Abdelmageed, Madelon Hulsebos, Daniela Oliveira, Catia Pesquita:
Results of SemTab 2021. SemTab@ISWC 2021: 1-12 - [c55]Daniel Faria, Beatriz Lima, Marta Contreiras Silva, Francisco M. Couto, Catia Pesquita:
AML and AMLC results for OAEI 2021. OM@ISWC 2021: 131-136 - [c54]Ana Guerreiro, Catia Pesquita, Daniel Faria:
VOWLMap: graph-based ontology alignment visualization and editing. ISWC (Posters/Demos/Industry) 2021 - [c53]Beatriz Lima, Daniel Faria, Catia Pesquita:
Pattern-Guided Association Rule Mining for Complex Ontology Alignment. ISWC (Posters/Demos/Industry) 2021 - [c52]Beatriz Lima, Daniel Faria, Catia Pesquita:
Challenges of evaluating complex alignments. OM@ISWC 2021: 49-61 - [c51]Mina Abd Nikooie Pour, Alsayed Algergawy, Florence Amardeilh, Reihaneh Amini, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Ian Harrow, Sven Hertling, Pascal Hitzler, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Jan Portisch, Catherine Roussey, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2021. OM@ISWC 2021: 62-108 - [c50]Ana Guerreiro, Catia Pesquita, Daniel Faria:
VOWLMap: Graph-based Ontology Alignment Visualization and Editing. VOILA@ISWC 2021: 82-94 - [c49]Marta Contreiras Silva, Daniel Faria, Catia Pesquita:
Integrating knowledge graphs for explainable artificial intelligence in biomedicine. OM@ISWC 2021: 209-210 - [c48]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Is there data leakage in protein-protein interaction prediction using knowledge graphs? ISWC (Posters/Demos/Industry) 2021 - [e9]Catia Pesquita, Ana Fred, Hugo Gamboa:
Proceedings of the 14th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2021, Volume 5: HEALTHINF, Online Streaming, February 11-13, 2021. SCITEPRESS 2021, ISBN 978-989-758-490-9 [contents] - [e8]Oshani Seneviratne, Catia Pesquita, Juan Sequeda, Lorena Etcheverry:
Proceedings of the ISWC 2021 Posters, Demos and Industry Tracks: From Novel Ideas to Industrial Practice co-located with 20th International Semantic Web Conference (ISWC 2021), Virtual Conference, October 24-28, 2021. CEUR Workshop Proceedings 2980, CEUR-WS.org 2021 [contents] - [e7]Patrick Lambrix, Catia Pesquita, Vitalis Wiens:
Proceedings of the Sixth International Workshop on the Visualization and Interaction for Ontologies and Linked Data co-located with the 20th International Semantic Web Conference (ISWC 2021), Virtual Conference, 2021. CEUR Workshop Proceedings 3023, CEUR-WS.org 2021 [contents] - [i3]Susana Nunes, Rita Torres Sousa, Catia Pesquita:
Predicting Gene-Disease Associations with Knowledge Graph Embeddings over Multiple Ontologies. CoRR abs/2105.04944 (2021) - 2020
- [j14]Carlota Cardoso, Rita Torres Sousa, Sebastian Köhler, Catia Pesquita:
A Collection of Benchmark Data Sets for Knowledge Graph-based Similarity in the Biomedical Domain. Database J. Biol. Databases Curation 2020 (2020) - [j13]Rita Torres Sousa, Sara Silva, Catia Pesquita:
Evolving knowledge graph similarity for supervised learning in complex biomedical domains. BMC Bioinform. 21(1): 6 (2020) - [j12]Lu Zhou, Élodie Thiéblin, Michelle Cheatham, Daniel Faria, Catia Pesquita, Cássia Trojahn dos Santos, Ondrej Zamazal:
Towards evaluating complex ontology alignments. Knowl. Eng. Rev. 35: e21 (2020) - [j11]Daniel Faria, Alfio Ferrara, Ernesto Jiménez-Ruiz, Stefano Montanelli, Catia Pesquita:
Crowd-assessing quality in uncertain data linking datasets. Knowl. Eng. Rev. 35: e33 (2020) - [c47]Carlota Cardoso, Rita Torres Sousa, Sebastian Köhler, Catia Pesquita:
A Collection of Benchmark Data Sets for Knowledge Graph-Based Similarity in the Biomedical Domain. ESWC (Satellite Events) 2020: 50-55 - [c46]Beatriz Lima, Ruben Branco, João Castanheira, Gustavo Fonseca, Catia Pesquita:
Learning reference alignments for ontology matching within and across domains. OM@ISWC 2020: 72-76 - [c45]Mina Abd Nikooie Pour, Alsayed Algergawy, Reihaneh Amini, Daniel Faria, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Clément Jonquet, Naouel Karam, Abderrahmane Khiat, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Pascal Hitzler, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Beyza Yaman, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2020. OM@ISWC 2020: 92-138 - [c44]Beatriz Lima, Daniel Faria, Francisco M. Couto, Isabel F. Cruz, Catia Pesquita:
OAEI 2020 results for AML and AMLC. OM@ISWC 2020: 154-160 - [e6]Valentina Ivanova, Patrick Lambrix, Catia Pesquita, Vitalis Wiens:
Proceedings of the Fifth International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 19th International Semantic Web Conference (ISWC 2020), Virtual Conference (originally planned in Athens, Greece), November 02, 2020. CEUR Workshop Proceedings 2778, CEUR-WS.org 2020 [contents]
2010 – 2019
- 2019
- [j10]Huanyu Li, Zlatan Dragisic, Daniel Faria, Valentina Ivanova, Ernesto Jiménez-Ruiz, Patrick Lambrix, Catia Pesquita:
User validation in ontology alignment: functional assessment and impact. Knowl. Eng. Rev. 34: e15 (2019) - [j9]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Visualization and interaction for ontologies and linked data - Editorial. J. Web Semant. 55: 145-149 (2019) - [c43]Alsayed Algergawy, Daniel Faria, Alfio Ferrara, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Naouel Karam, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Stefano Montanelli, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2019. OM@ISWC 2019: 46-85 - [c42]Daniel Faria, Catia Pesquita, Teemu Tervo, Francisco M. Couto, Isabel F. Cruz:
AML and AMLC Results for OAEI 2019. OM@ISWC 2019: 101-106 - 2018
- [j8]Daniela Oliveira, Catia Pesquita:
Improving the interoperability of biomedical ontologies with compound alignments. J. Biomed. Semant. 9(1): 1:1-1:13 (2018) - [j7]Daniel Faria, Catia Pesquita, Isabela Mott, Catarina Martins, Francisco M. Couto, Isabel F. Cruz:
Tackling the challenges of matching biomedical ontologies. J. Biomed. Semant. 9(1): 4:1-4:19 (2018) - [j6]Michelle Cheatham, Catia Pesquita, Daniela Oliveira, Helena B. McCurdy:
The properties of property alignment on the semantic web. Int. J. Metadata Semant. Ontologies 13(1): 42-56 (2018) - [c41]Catia Pesquita, Valentina Ivanova, Steffen Lohmann, Patrick Lambrix:
A Framework to Conduct and Report on Empirical User Studies in Semantic Web Contexts. EKAW 2018: 567-583 - [c40]Alsayed Algergawy, Michelle Cheatham, Daniel Faria, Alfio Ferrara, Irini Fundulaki, Ian Harrow, Sven Hertling, Ernesto Jiménez-Ruiz, Naouel Karam, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Stefano Montanelli, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Daniela Schmidt, Pavel Shvaiko, Andrea Splendiani, Élodie Thiéblin, Cássia Trojahn, Jana Vatascinová, Ondrej Zamazal, Lu Zhou:
Results of the Ontology Alignment Evaluation Initiative 2018. OM@ISWC 2018: 76-116 - [c39]Daniel Faria, Catia Pesquita, Booma Sowkarthiga Balasubramani, Teemu Tervo, David Carriço, Rodrigo Garrilha, Francisco M. Couto, Isabel F. Cruz:
Results of AML participation in OAEI 2018. OM@ISWC 2018: 125-131 - [c38]Madalena Pavão, Catia Pesquita:
Complex matching for multiple ontologies: an exploratory study. OM@ISWC 2018: 222-223 - [e5]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Proceedings of the Fourth International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 17th International Semantic Web Conference, VOILA@ISWC 2018, Monterey, CA, USA, October 8, 2018. CEUR Workshop Proceedings 2187, CEUR-WS.org 2018 [contents] - 2017
- [j5]Michelle Cheatham, Isabel F. Cruz, Jérôme Euzenat, Catia Pesquita:
Special issue on ontology and linked data matching. Semantic Web 8(2): 183-184 (2017) - [c37]Manel Achichi, Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Ian Harrow, Valentina Ivanova, Ernesto Jiménez-Ruiz, Kristian Kolthoff, Elena Kuss, Patrick Lambrix, Henrik Leopold, Huanyu Li, Christian Meilicke, Majid Mohammadi, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Heiner Stuckenschmidt, Élodie Thiéblin, Konstantin Todorov, Cássia Trojahn, Ondrej Zamazal:
Results of the Ontology Alignment Evaluation Initiative 2017. OM@ISWC 2017: 61-113 - [c36]Daniel Faria, Booma S. Balasubramani, Vivek R. Shivaprabhu, Isabela Mott, Catia Pesquita, Francisco M. Couto, Isabel F. Cruz:
Results of AML in OAEI 2017. OM@ISWC 2017: 122-128 - [p1]Michelle Cheatham, Catia Pesquita:
Semantic Data Integration. Handbook of Big Data Technologies 2017: 263-305 - [e4]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Proceedings of the Third International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 22, 2017. CEUR Workshop Proceedings 1947, CEUR-WS.org 2017 [contents] - 2016
- [c35]Marzieh Bakhshandeh, Catia Pesquita, José Borbinha:
An Ontological Matching Approach for Enterprise Architecture Model Analysis. BIS 2016: 315-326 - [c34]João Cardoso, Marzieh Bakhshandeh, Daniel Faria, Catia Pesquita, José Borbinha:
Ontology-Based Approach for Heterogeneity Analysis of EA Models. Business Process Management Workshops 2016: 131-142 - [c33]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Workshop Summary. VOILA@ISWC 2016: 1-4 - [c32]Manel Achichi, Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Ian Harrow, Valentina Ivanova, Ernesto Jiménez-Ruiz, Elena Kuss, Patrick Lambrix, Henrik Leopold, Huanyu Li, Christian Meilicke, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Andrea Splendiani, Heiner Stuckenschmidt, Konstantin Todorov, Cássia Trojahn dos Santos, Ondrej Zamazal:
Results of the Ontology Alignment Evaluation Initiative 2016. OM@ISWC 2016: 73-129 - [c31]Daniel Faria, Catia Pesquita, Booma S. Balasubramani, Catarina Martins, João Cardoso, Hugo Curado, Francisco M. Couto, Isabel F. Cruz:
OAEI 2016 results of AML. OM@ISWC 2016: 138-145 - [c30]Zlatan Dragisic, Valentina Ivanova, Patrick Lambrix, Daniel Faria, Ernesto Jiménez-Ruiz, Catia Pesquita:
User Validation in Ontology Alignment. ISWC (1) 2016: 200-217 - [e3]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Proceedings of the Second International Workshop on Visualization and Interaction for Ontologies and Linked Data co-located with the 15th International Semantic Web Conference, VOILA@ISWC 2016, Kobe, Japan, October 17, 2016. CEUR Workshop Proceedings 1704, CEUR-WS.org 2016 [contents] - 2015
- [c29]Gonçalo Antunes, Marzieh Bakhshandeh, José Borbinha, João Cardoso, Sharam Dadashnia, Chiara Di Francescomarino, Mauro Dragoni, Peter Fettke, Avigdor Gal, Chiara Ghidini, Philip Hake, Abderrahmane Khiat, Christopher Klinkmüller, Elena Kuss, Henrik Leopold, Peter Loos, Christian Meilicke, Tim Niesen, Catia Pesquita, Timo Péus, Andreas Schoknecht, Eitam Sheetrit, Andreas Sonntag, Heiner Stuckenschmidt, Tom Thaler, Ingo Weber, Matthias Weidlich:
The Process Model Matching Contest 2015. EMISA 2015: 127-155 - [c28]Catarina Martins, Daniel Faria, Catia Pesquita:
Visualization and editing of biomedical ontology alignments in AgreementMakerLight. ICBO 2015 - [c27]Catarina Martins, Ernesto Jiménez-Ruiz, Emanuel Santos, Catia Pesquita:
Towards visualizing the mapping incoherences in Bioportal. ICBO 2015 - [c26]Daniela Oliveira, Catia Pesquita:
Compound matching of biomedical ontologies. ICBO 2015 - [c25]Daniela Oliveira, Catia Pesquita:
Inferring logical definitions using compound ontology matching. ICBO 2015 - [c24]Michelle Cheatham, Zlatan Dragisic, Jérôme Euzenat, Daniel Faria, Alfio Ferrara, Giorgos Flouris, Irini Fundulaki, Roger Granada, Valentina Ivanova, Ernesto Jiménez-Ruiz, Patrick Lambrix, Stefano Montanelli, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Alessandro Solimando, Cássia Trojahn dos Santos, Ondrej Zamazal:
Results of the Ontology Alignment Evaluation Initiative 2015. OM 2015: 60-115 - [c23]Daniel Faria, Catarina Martins, Amruta Nanavaty, Daniela Oliveira, Booma Sowkarthiga, Aynaz Taheri, Catia Pesquita, Francisco M. Couto, Isabel F. Cruz:
AML results for OAEI 2015. OM 2015: 116-123 - [c22]Marzieh Bakhshandeh, Catia Pesquita, José Borbinha:
Ontology matching techniques for enterprise architecture models. OM 2015: 236-237 - [e2]Valentina Ivanova, Patrick Lambrix, Steffen Lohmann, Catia Pesquita:
Proceedings of the International Workshop on Visualizations and User Interfaces for Ontologies and Linked Data co-located with 14th International Semantic Web Conference (ISWC 2015), Bethlehem, Pennsylvania, USA, October 11, 2015. CEUR Workshop Proceedings 1456, CEUR-WS.org 2015 [contents] - 2014
- [j4]Catia Pesquita, João D. Ferreira, Francisco M. Couto, Mário J. Silva:
The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources. J. Biomed. Semant. 5: 4 (2014) - [c21]Catia Pesquita, Daniel Faria, Emanuel Santos, Jean-Marc Neefs, Francisco M. Couto:
Towards Visualizing the Alignment of Large Biomedical Ontologies. DILS 2014: 104-111 - [c20]Valentina Ivanova, Tomi Kauppinen, Steffen Lohmann, Suvodeep Mazumdar, Catia Pesquita, Kai Xu:
Introduction to VISUAL 2014 - Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics. EKAW (Satellite Events) 2014: 80-82 - [c19]Daniel Faria, Ernesto Jiménez-Ruiz, Catia Pesquita, Emanuel Santos, Francisco M. Couto:
Towards Annotating Potential Incoherences in BioPortal Mappings. ISWC (2) 2014: 17-32 - [c18]Daniel Faria, Catarina Martins, Amruta Nanavaty, Aynaz Taheri, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto:
AgreementMakerLight results for OAEI 2014. OM 2014: 105-112 - [c17]Catia Pesquita, Michelle Cheatham, Daniel Faria, Joana Barros, Emanuel Santos, Francisco M. Couto:
Building reference alignments for compound matching of multiple ontologies using OBO cross-products. OM 2014: 172-173 - [c16]Daniel Faria, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto:
AgreementMakerLight 2.0: Towards Efficient Large-Scale Ontology Matching. ISWC (Posters & Demos) 2014: 457-460 - [e1]Valentina Ivanova, Tomi Kauppinen, Steffen Lohmann, Suvodeep Mazumdar, Catia Pesquita, Kai Xu:
Proceedings of the International Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics co-located with 19th International Conference on Knowledge Engineering and Knowledge Management, VISUAL@EKAW 2014, Linköping, Sweden, November 24, 2014. CEUR Workshop Proceedings 1299, CEUR-WS.org 2014 [contents] - 2013
- [c15]João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva:
Digital preservation of epidemic resources: coupling metadata and ontologies. iPRES 2013 - [c14]Daniel Faria, Catia Pesquita, Emanuel Santos, Matteo Palmonari, Isabel F. Cruz, Francisco M. Couto:
The AgreementMakerLight Ontology Matching System. OTM Conferences 2013: 527-541 - [c13]Catia Pesquita, Daniel Faria, Emanuel Santos, Francisco M. Couto:
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments. OM 2013: 13-24 - [c12]Daniel Faria, Catia Pesquita, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto:
AgreementMakerLight results for OAEI 2013. OM 2013: 101-108 - [c11]Catia Pesquita, Daniel Faria, Cosmin Stroe, Emanuel Santos, Isabel F. Cruz, Francisco M. Couto:
What's in a 'nym'? Synonyms in Biomedical Ontology Matching. ISWC (1) 2013: 526-541 - [i2]Emanuel Santos, Daniel Faria, Catia Pesquita, Francisco M. Couto:
Ontology alignment repair through modularization and confidence-based heuristics. CoRR abs/1307.5322 (2013) - 2012
- [j3]Catia Pesquita, Francisco M. Couto:
Predicting the Extension of Biomedical Ontologies. PLoS Comput. Biol. 8(9) (2012) - [c10]João D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva:
Bringing epidemiology into the Semantic Web. ICBO 2012 - [i1]Daniel Faria, Catia Pesquita, Emanuel Santos, Francisco M. Couto, Cosmin Stroe, Isabel F. Cruz:
Testing the AgreementMaker System in the Anatomy Task of OAEI 2012. CoRR abs/1212.1625 (2012) - 2011
- [c9]Isabel F. Cruz, Cosmin Stroe, Catia Pesquita, Francisco M. Couto, Valerie Cross:
Biomedical Ontology Matching Using the AgreementMaker System. ICBO 2011 - [c8]Catia Pesquita, Francisco M. Couto:
Where GO is Going and What it Means for Ontology Extension. ICBO 2011 - [c7]Bruno Tavares, Hugo P. Bastos, Daniel Faria, João D. Ferreira, Tiago Grego, Catia Pesquita, Francisco M. Couto:
The Biomedical Ontology Applications (BOA) Framework. ICBO 2011 - [c6]Isabel F. Cruz, Cosmin Stroe, Federico Caimi, Alessio Fabiani, Catia Pesquita, Francisco M. Couto, Matteo Palmonari:
Using AgreementMaker to align ontologies for OAEI 2011. OM 2011 - 2010
- [c5]Catia Pesquita, Cosmin Stroe, Isabel F. Cruz, Francisco M. Couto:
BLOOMS on AgreementMaker: results for OAEI 2010. OM 2010
2000 – 2009
- 2009
- [j2]Catia Pesquita, Daniel Faria, André O. Falcão, Phillip W. Lord, Francisco M. Couto:
Semantic Similarity in Biomedical Ontologies. PLoS Comput. Biol. 5(7) (2009) - [c4]Catia Pesquita, Tiago Grego, Francisco M. Couto:
Identifying Gene Ontology Areas for Automated Enrichment. IWANN (2) 2009: 934-941 - [c3]Catia Pesquita, Daniel Faria, Francisco M. Couto:
Measuring coherence between electronic and manual annotations in biological databases. SAC 2009: 806-807 - 2008
- [j1]Catia Pesquita, Daniel Faria, Hugo P. Bastos, António E. N. Ferreira, André O. Falcão, Francisco M. Couto:
Metrics for GO based protein semantic similarity: a systematic evaluation. BMC Bioinform. 9(S-5) (2008) - [c2]Francisco M. Couto, Tiago Grego, Hugo P. Bastos, Catia Pesquita, Rafael P. Torres, Pablo Sanchez, Leandro Pascual, Christian Blaschke:
Identifying bioentity recognition errors of rule-based text-mining systems. ICDIM 2008: 733-738 - [c1]Hugo P. Bastos, Catia Pesquita, Daniel Faria, André O. Falcão:
BOLOS: BLAST & Ontology Linked-hOmologue Stars. SAC 2008: 1278-1281
Coauthor Index
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