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2020 – today
- 2023
[c34]Shaira Limson Kee
, Michael Aaron G. Sy, Samuel P. Border, Nicholas J. Lucarelli, Akshita Gupta, Pinaki Sarder, Marvin C. Masalunga, Myles Joshua Toledo Tan:
Predicting Papillary Renal Cell Carcinoma Prognosis Using Integrative Analysis of Histopathological Images and Genomic Data. IWBBIO (2) 2023: 208-221- [c33]Samuel P. Border, Avi Rosenberg, Jarcy Zee, Richard M. Levenson, Kuang-Yu Jen, Pinaki Sarder, Farzad Fereidouni:
Improving quantification of renal fibrosis using deep-DUET. Digital and Computational Pathology 2023 - [c32]Brandon Ginley, Nicholas J. Lucarelli, Jarcy Zee, Sanjay Jain, Seung Seok Han, Luis Rodrigues, Michelle L. Wong, Kuang-Yu Jen, Pinaki Sarder:
Automated reference kidney histomorphometry using a panoptic segmentation neural network correlates to patient demographics and creatinine. Digital and Computational Pathology 2023 - [c31]Brendon Lutnick, Nicholas J. Lucarelli, Pinaki Sarder:
Generative modeling of histology tissue reduces human annotation effort for segmentation model development. Digital and Computational Pathology 2023 - [c30]Benjamin Shickel, Nicholas J. Lucarelli, Adish Rao, Donghwan Yun, Kyung Chul Moon, Seung Seok Han, Pinaki Sarder:
Spatially aware transformer networks for contextual prediction of diabetic nephropathy progression from whole slide images. Digital and Computational Pathology 2023 - [c29]Myles Joshua Toledo Tan, Alfredo Bayu Satriya, Shaira Limson Kee, Michael Aaron G. Sy, Pinaki Sarder:
The Triple Aim of a Semester-Long Course in Science, Technology, and Society. TALE 2023: 1-7 - 2022
- [j3]Usman Muhammad, Md. Ziaul Hoque, Mourad Oussalah, Anja Keskinarkaus, Tapio Seppänen, Pinaki Sarder:
SAM: Self-augmentation mechanism for COVID-19 detection using chest X-ray images. Knowl. Based Syst. 241: 108207 (2022) - [c28]Souradeep Chakraborty, Rajarsi Gupta, Ke Ma, Darshana Govind, Pinaki Sarder, Won-Tak Choi, Waqas Mahmud, Eric Yee, Felicia Allard, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras:
Predicting the Visual Attention of Pathologists Evaluating Whole Slide Images of Cancer. MOVI@MICCAI 2022: 11-21 - [c27]Samuel P. Border, Brandon Ginley, John E. Tomaszewski, Pinaki Sarder:
HistoLens: a generalizable tool for increasing accessibility and interpretability of quantitative analyses in digital pathology. Digital and Computational Pathology 2022 - [c26]Darshana Govind, Saber Meamardoost, Rabi Yacoub, Rudiyanto Gunawan, John E. Tomaszewski, Pinaki Sarder:
Integrating image analysis with single cell RNA-seq data to study podocyte-specific changes in diabetic kidney disease. Digital and Computational Pathology 2022 - [c25]Neil Kavthekar, Brandon Ginley, Samuel P. Border, Nicholas J. Lucarelli, Kuang-Yu Jen, Pinaki Sarder:
Automated tubular morphometric visualization for whole kidney biopsy. Digital and Computational Pathology 2022 - [c24]Nicholas J. Lucarelli, Donghwan Yun, Dohyun Han, Brandon Ginley, Kyung Chul Moon, Avi Rosenberg, John Tomaszewski, Seung Seok Han, Pinaki Sarder:
Computational integration of renal histology and urinary proteomics using neural networks. Digital and Computational Pathology 2022 - [c23]Brendon Lutnick, David Manthey, Jan U. Becker, Jonathan E. Zuckerman, Luis Rodrigues, Kuang Yu Jen, Pinaki Sarder:
A cloud-based tool for federated segmentation of whole slide images. Digital and Computational Pathology 2022 - 2021
- [c22]Darshana Govind, Briana A. Santo, Brandon Ginley, Rabi Yacoub, Avi Z. Rosenberg, Kuang-Yu Jen, Vighnesh Walavalkar, Gregory E. Wilding, Amber M. Worral, Imtiaz Mohammad, Pinaki Sarder:
Automated detection and quantification of Wilms' Tumor 1-positive cells in murine diabetic kidney disease. Digital Pathology 2021 - [c21]Kuang-Yu Jen, Leema Krishna Murali, Brendon Lutnick, Brandon Ginley, Darshana Govind, Hidetoshi Mori, Guofeng Gao, Pinaki Sarder:
In silico multi-compartment detection based on multiplex immunohistochemical staining in renal pathology. Digital Pathology 2021 - [c20]Brendon Lutnick, Avinash Kammardi Shashiprakash, David Manthey, Pinaki Sarder:
User friendly, cloud based, whole slide image segmentation. Digital Pathology 2021 - [c19]Avinash Kammardi Shashiprakash, Brendon Lutnick, Brandon Ginley, Darshana Govind, Nicholas J. Lucarelli, Kuang-Yu Jen, Avi Z. Rosenberg, Anatoly Urisman, Vighnesh Walavalkar, Jonathan E. Zuckerman, Marco Delsante, Mei Lin Z. Bissonnette, John Tomaszewski, David Manthey, Pinaki Sarder:
A distributed system improves inter-observer and AI concordance in annotating interstitial fibrosis and tubular atrophy. Digital Pathology 2021 - [i5]Brendon Lutnick, Leema Krishna Murali, Brandon Ginley, Pinaki Sarder:
Histo-fetch - On-the-fly processing of gigapixel whole slide images simplifies and speeds neural network training. CoRR abs/2102.11433 (2021) - 2020
- [c18]Brandon Ginley, Kuang-Yu Jen, Avi Rosenberg, Giovanni Maria Rossi, Sanjay Jain, Pinaki Sarder:
Fully automated classification of glomerular lesions in lupus nephritis. Digital Pathology 2020: 113200Y - [c17]Darshana Govind, Kuang-Yu Jen, Pinaki Sarder:
Deep learning-based automated hot-spot detection and tumor grading in human gastrointestinal neuroendocrine tumor. Digital Pathology 2020: 113200P - [c16]Leema Krishna Murali, Brendon Lutnick, Brandon Ginley, John Tomaszewski, Pinaki Sarder:
Generative modeling for renal microanatomy. Digital Pathology 2020: 113200F - [c15]Brendon Lutnick, Brandon Ginley, Kuang-Yu Jen, Wen Dong, Pinaki Sarder:
Generative modeling for label-free glomerular modeling and classification. Digital Pathology 2020: 1132007 - [c14]Briana A. Santo, Brahm H. Segal, John Tomaszewski, Imtiaz Mohammad, Amber M. Worral, Sanjay Jain, Michelle B. Visser, Pinaki Sarder:
Neutrophil Extracellular Traps (NETs): an unexplored territory in renal pathobiology, a pilot computational study. Digital Pathology 2020: 1132012 - [c13]Samuel P. Border, Kuang-Yu Jen, Washington L. C. dos-Santos, John Tomaszewski, Pinaki Sarder:
Probabilistic modelling of diabetic nephropathy progression. Digital Pathology 2020: 1132014 - [c12]Kathryn E. Maraszek, Briana A. Santo, Rabi Yacoub, John Tomaszewski, Imtiaz Mohammad, Amber M. Worral, Pinaki Sarder:
The presence and location of podocytes in glomeruli as affected by diabetes mellitus. Digital Pathology 2020: 1132018 - [i4]Brendon Lutnick, Wen Dong, Zohar Nussinov, Pinaki Sarder:
Unsupervised Community Detection with a Potts Model Hamiltonian, an Efficient Algorithmic Solution, and Applications in Digital Pathology. CoRR abs/2002.01599 (2020) - [i3]Brandon Ginley, Kuang-Yu Jen, Avi Rosenberg, Felicia Yen, Sanjay Jain, Agnes B. Fogo, Pinaki Sarder:
Neural Network Segmentation of Interstitial Fibrosis, Tubular Atrophy, and Glomerulosclerosis in Renal Biopsies. CoRR abs/2002.12868 (2020)
2010 – 2019
- 2019
- [j2]Brendon Lutnick, Brandon Ginley, Darshana Govind, Sean D. McGarry, Peter S. LaViolette, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Kuang-Yu Jen, Pinaki Sarder:
An integrated iterative annotation technique for easing neural network training in medical image analysis. Nat. Mach. Intell. 1(2): 112-119 (2019) - [c11]Aurijoy Majumdar, Kuang-Yu Jen, Sanjay Jain, John Tomaszewski, Pinaki Sarder:
Examining structural patterns and causality in diabetic nephropathy using inter-glomerular distance and Bayesian graphical models. Digital Pathology 2019: 1095608 - [c10]Siddhartha Dhiman, Itender Singh, Pinaki Sarder:
Computational analysis of cerebrovascular structures imaged using two-photon microscopy. Digital Pathology 2019: 1095617 - 2018
- [c9]Brandon G. Ginley, John Tomaszewski, Kuang-Yu Jen, Agnes B. Fogo, Sanjay Jain, Pinaki Sarder:
Computational analysis of the structural progression of human glomeruli in diabetic nephropathy. Digital Pathology 2018: 105810A - [c8]Brendon Lutnick, Rabi Yacoub, Kuang-Yu Jen, John Tomaszewski, Sanjay Jain, Pinaki Sarder:
Deep variational auto-encoders for unsupervised glomerular classification. Digital Pathology 2018: 105810C - [c7]Olivier Simon, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Pinaki Sarder:
Examining structural changes in diabetic nephropathy using inter-nuclear distances in glomeruli: a comparison of variously automated methods. Digital Pathology 2018: 105810B - [c6]Darshana Govind, Brandon Ginley, Brendon Lutnick, John Tomaszewski, Pinaki Sarder:
Glomerular detection and segmentation from multimodal microscopy images using a Butterworth band-pass filter. Digital Pathology 2018: 1058114 - [i2]Brendon Lutnick, Brandon Ginley, Darshana Govind, Sean D. McGarry, Peter S. LaViolette, Rabi Yacoub, Sanjay Jain, John Tomaszewski, Kuang-Yu Jen, Pinaki Sarder:
Iterative annotation to ease neural network training: Specialized machine learning in medical image analysis. CoRR abs/1812.07509 (2018) - 2017
- [c5]Brandon Ginley, Tiffany Emmons, Prabhu Sasankan, Constantin Urban, Brahm H. Segal, Pinaki Sarder:
Identification and characterization of neutrophil extracellular trap shapes in flow cytometry. Digital Pathology 2017: 101400D - [c4]Brandon Ginley, John Tomaszewski, Pinaki Sarder:
Automatic computational labeling of glomerular textural boundaries. Digital Pathology 2017: 101400G - [c3]Brendon Lutnick, John Tomaszewski, Pinaki Sarder:
Leveraging unsupervised training sets for multi-scale compartmentalization in renal pathology. Digital Pathology 2017: 101400I - 2016
- [c2]Pinaki Sarder, Brandon Ginley, John Tomaszewski:
Automated renal histopathology: digital extraction and quantification of renal pathology. Digital Pathology 2016: 97910F - 2012
- [i1]Dandan Hu, Pinaki Sarder, Peter Ronhovde, Sharon Bloch, Samuel Achilefu, Zohar Nussinov:
Segmenting Intracellular Distribution Images Derived by Fluorescent Dyes Using a Potts Model Hamiltonian. CoRR abs/1208.4662 (2012) - 2011
- [c1]Xiaoxiao Xu, Pinaki Sarder, Arye Nehorai:
Statistical design of position-encoded microsphere arrays at low target concentrations. ACSCC 2011: 1694-1698 - 2010
- [p1]Pinaki Sarder, Weixiong Zhang, J. Perren Cobb, Arye Nehorai:
Gene Reachability Using Page Ranking on Gene Co-expression Networks. Link Mining 2010: 557-568
2000 – 2009
- 2006
- [j1]Pinaki Sarder, Arye Nehorai:
Deconvolution methods for 3-D fluorescence microscopy images. IEEE Signal Process. Mag. 23(3): 32-45 (2006)
Coauthor Index
aka: Brandon G. Ginley
aka: Kuang Yu Jen
aka: John E. Tomaszewski
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