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ORCIDAlex Pothen
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- affiliation: Purdue University, West Lafayette, IN, USA
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2020 – today
- 2025
[i15]Siddhartha Shankar Das, Naheed Anjum Arafat, Muftiqur Rahman, S. M. Ferdous, Alex Pothen, Mahantesh M. Halappanavar:
SGS-GNN: A Supervised Graph Sparsification method for Graph Neural Networks. CoRR abs/2502.10208 (2025)- [i14]Henrik Reinstädtler, S. M. Ferdous, Alex Pothen, Bora Uçar, Christian Schulz:
Semi-Streaming Algorithms for Hypergraph Matching. CoRR abs/2502.13636 (2025) - 2024
- [c52]S. M. Ferdous
, Bhargav Samineni, Alex Pothen, Mahantesh Halappanavar, Bala Krishnamoorthy:
Semi-Streaming Algorithms for Weighted k-Disjoint Matchings. ESA 2024: 53:1-53:19 - [c51]Siddhartha Shankar Das, S. M. Ferdous, Mahantesh M. Halappanavar, Edoardo Serra, Alex Pothen:
AGS-GNN: Attribute-guided Sampling for Graph Neural Networks. KDD 2024: 538-549 - [c50]Hanjing Xu, Alex Pothen:
Divide and Conquer-based Quantum Algorithms for Maximum Independent Set on Large Separable Graphs. QCE 2024: 87-97 - [c49]S. M. Ferdous, Alex Pothen, Mahantesh Halappanavar:
Streaming Matching and Edge Cover in Practice. SEA 2024: 12:1-12:22 - [i13]Siddhartha Shankar Das, S. M. Ferdous, Mahantesh M. Halappanavar, Edoardo Serra, Alex Pothen:
AGS-GNN: Attribute-guided Sampling for Graph Neural Networks. CoRR abs/2405.15218 (2024) - [i12]Kathrin Hanauer, Uwe Naumann, Alex Pothen, Robert Schreiber:
Discrete Algorithms on Modern and Emerging Compute Infrastructure (Dagstuhl Seminar 24201). Dagstuhl Reports 14(5): 12-24 (2024) - 2023
- [j31]Hanjing Xu, Samudra Dasgupta, Alex Pothen, Arnab Banerjee:
Dynamic Asset Allocation with Expected Shortfall via Quantum Annealing. Entropy 25(3): 541 (2023) - [c48]Pasqua D'Ambra, Fabio Durastante, S. M. Ferdous, Salvatore Filippone, Mahantesh Halappanavar, Alex Pothen:
AMG Preconditioners based on Parallel Hybrid Coarsening and Multi-objective Graph Matching. PDP 2023: 59-67 - [i11]S. M. Ferdous, Bhargav Samineni, Alex Pothen, Mahantesh Halappanavar, Bala Krishnamoorthy:
Streaming Algorithms for Weighted k-Disjoint Matchings. CoRR abs/2311.02073 (2023) - 2022
- [j30]Ahmed Al-Herz, Alex Pothen:
A 2/3-approximation algorithm for vertex-weighted matching. Discret. Appl. Math. 308: 46-67 (2022) - [c47]Siddhartha Shankar Das, Mahantesh Halappanavar, Antonino Tumeo, Edoardo Serra, Alex Pothen, Ehab Al-Shaer:
VWC-BERT: Scaling Vulnerability-Weakness-Exploit Mapping on Modern AI Accelerators. IEEE Big Data 2022: 1224-1229 - [i10]Abida Sanjana Shemonti, Emanuele Plebani, Natalia P. Biscola, Deborah M. Jaffey, Leif A. Havton, Janet R. Keast, Alex Pothen, Murat Dundar, Terry L. Powley, Bartek Rajwa:
A novel statistical methodology for quantifying the spatial arrangements of axons in peripheral nerves. CoRR abs/2210.09554 (2022) - [i9]Abida Sanjana Shemonti, Joshua D. Eisenberg, Robert O. Heuckeroth, Marthe J. Howard, Alex Pothen, Bartek Rajwa:
Generative modeling of the enteric nervous system employing point pattern analysis and graph construction. CoRR abs/2210.15044 (2022) - 2021
- [j29]Seher Acer, Ariful Azad, Erik G. Boman, Aydin Buluç, Karen D. Devine, S. M. Ferdous, Nitin Gawande, Sayan Ghosh, Mahantesh Halappanavar, Ananth Kalyanaraman, Arif Khan, Marco Minutoli, Alex Pothen, Sivasankaran Rajamanickam, Oguz Selvitopi, Nathan R. Tallent, Antonino Tumeo:
EXAGRAPH: Graph and combinatorial methods for enabling exascale applications. Int. J. High Perform. Comput. Appl. 35(6): 553-571 (2021) - [c46]S. M. Ferdous, Alex Pothen, Arif Khan, Ajay Panyala, Mahantesh Halappanavar:
A Parallel Approximation Algorithm for Maximizing Submodular b-Matching. ACDA 2021: 45-56 - [c45]Siddhartha Shankar Das, Edoardo Serra, Mahantesh Halappanavar, Alex Pothen, Ehab Al-Shaer:
V2W-BERT: A Framework for Effective Hierarchical Multiclass Classification of Software Vulnerabilities. DSAA 2021: 1-12 - [i8]Siddhartha Shankar Das, Edoardo Serra, Mahantesh Halappanavar, Alex Pothen, Ehab Al-Shaer:
V2W-BERT: A Framework for Effective Hierarchical Multiclass Classification of Software Vulnerabilities. CoRR abs/2102.11498 (2021) - [i7]S. M. Ferdous, Alex Pothen, Arif Khan, Ajay Panyala, Mahantesh Halappanavar:
A Parallel Approximation Algorithm for Maximizing Submodular b-Matching. CoRR abs/2107.05793 (2021) - 2020
- [j28]Yu Hong Yeung, Alex Pothen, Jessica Crouch:
AMPS: Real-time mesh cutting with augmented matrices for surgical simulations. Numer. Linear Algebra Appl. 27(6) (2020) - [c44]Ahmed Al-Herz, Alex Pothen:
A Parallel 2/3-Approximation Algorithm for Vertex-Weighted Matching. CSC 2020: 12-21 - [c43]Xin Cheng, Hemanta K. Maji, Alex Pothen:
Graphs with Tunable Chromatic Numbers for Parallel Coloring. CSC 2020: 54-64
2010 – 2019
- 2019
- [j27]Alex Pothen, S. M. Ferdous, Fredrik Manne:
Approximation algorithms in combinatorial scientific computing. Acta Numer. 28: 541-633 (2019) - [j26]Florin Dobrian, Mahantesh Halappanavar, Alex Pothen, Ahmed Al-Herz:
A 2/3-Approximation Algorithm for Vertex Weighted Matching in Bipartite Graphs. SIAM J. Sci. Comput. 41(1): A566-A591 (2019) - [c42]Alex Pothen, Steve Ulrich:
Close-Range Rendezvous with a Moving Target Spacecraft using Udwadia- Kalaba Equation. ACC 2019: 3267-3272 - [c41]Alex Pothen:
Parallel algorithms through approximation: graphs, data privacy and machine learning. CF 2019: 340 - [c40]Arif M. Khan, Mahantesh Halappanavar, Tobias Hagge, Karol Kowalski, Alex Pothen, Sriram Krishnamoorthy:
Mapping Arbitrarily Sparse Two-Body Interactions on One-Dimensional Quantum Circuits. HiPC 2019: 52-62 - [i6]Ahmed Al-Herz, Alex Pothen:
A 2/3-Approximation Algorithm for Vertex-weighted Matching. CoRR abs/1902.05877 (2019) - 2018
- [j25]Mu Wang, Guang Lin, Alex Pothen:
Using automatic differentiation for compressive sensing in uncertainty quantification. Optim. Methods Softw. 33(4-6): 799-812 (2018) - [c39]Ye Chen, Ryan D. Calvert, Ariful Azad, Bartek Rajwa, James Fleet, Timothy Ratliff, Alex Pothen:
Phenotyping Immune Cells in Tumor and Healthy Tissue Using Flow Cytometry Data. BCB 2018: 73-78 - [c38]S. M. Ferdous, Arif M. Khan, Alex Pothen:
Parallel Algorithms Through Approximation: B-Edge Cover. IPDPS 2018: 22-33 - [c37]Arif Khan, Krzysztof Choromanski, Alex Pothen, S. M. Ferdous, Mahantesh Halappanavar, Antonino Tumeo:
Adaptive anonymization of data using b-edge cover. SC 2018: 59:1-59:11 - [c36]S. M. Ferdous, Alex Pothen, Arif Khan:
New Approximation Algorithms for Minimum Weighted Edge Cover. CSC 2018: 97-108 - [i5]Florin Dobrian, Mahantesh Halappanavar, Alex Pothen, Ahmed Al-Herz:
A 2/3-Approximation Algorithm for Vertex-weighted Matching in Bipartite Graphs. CoRR abs/1804.08016 (2018) - [i4]Yu Hong Yeung, Alex Pothen, Jessica Crouch:
AMPS: A Real-time Mesh Cutting Algorithm for Surgical Simulations. CoRR abs/1811.00328 (2018) - 2017
- [j24]Yu Hong Yeung, Alex Pothen, Mahantesh Halappanavar, Zhenyu Huang:
AMPS: An Augmented Matrix Formulation for Principal Submatrix Updates with Application to Power Grids. SIAM J. Sci. Comput. 39(5) (2017) - [j23]Ariful Azad, Aydin Buluç, Alex Pothen:
Computing Maximum Cardinality Matchings in Parallel on Bipartite Graphs via Tree-Grafting. IEEE Trans. Parallel Distributed Syst. 28(1): 44-59 (2017) - [j22]Tianying Wu, Vaithianathan Venkatasubramanian, Alex Pothen:
Fast Parallel Stochastic Subspace Algorithms for Large-Scale Ambient Oscillation Monitoring. IEEE Trans. Smart Grid 8(3): 1494-1503 (2017) - [c35]Alex Pothen, Ananth Grama:
Introduction to HiCOMB Workshop. IPDPS Workshops 2017: 251 - [i3]Yu Hong Yeung, Alex Pothen, Mahantesh Halappanavar, Zhenyu Huang:
AMPS: An Augmented Matrix Formulation for Principal Submatrix Updates with Application to Power Grids. CoRR abs/1706.03147 (2017) - 2016
- [j21]Ariful Azad, Bartek Rajwa, Alex Pothen:
flowVS: channel-specific variance stabilization in flow cytometry. BMC Bioinform. 17: 291 (2016) - [j20]Mu Wang, Assefaw Hadish Gebremedhin, Alex Pothen:
Capitalizing on live variables: new algorithms for efficient Hessian computation via automatic differentiation. Math. Program. Comput. 8(4): 393-433 (2016) - [j19]Arif M. Khan, Alex Pothen, Md. Mostofa Ali Patwary, Nadathur Rajagopalan Satish, Narayanan Sundaram, Fredrik Manne, Mahantesh Halappanavar, Pradeep Dubey:
Efficient Approximation Algorithms for Weighted b-Matching. SIAM J. Sci. Comput. 38(5) (2016) - [j18]Yu Hong Yeung, Jessica Crouch, Alex Pothen:
Interactively Cutting and Constraining Vertices in Meshes Using Augmented Matrices. ACM Trans. Graph. 35(2): 18:1-18:17 (2016) - [c34]Arif M. Khan, Alex Pothen, Md. Mostofa Ali Patwary, Mahantesh Halappanavar, Nadathur Rajagopalan Satish, Narayanan Sundaram, Pradeep Dubey:
Designing scalable b-Matching algorithms on distributed memory multiprocessors by approximation. SC 2016: 773-783 - [c33]Arif M. Khan, Alex Pothen:
A New 3/2-Approximation Algorithm for the b-Edge Cover Problem. CSC 2016: 52-61 - [c32]Mu Wang, Alex Pothen, Paul D. Hovland:
Edge Pushing is Equivalent to Vertex Elimination for Computing Hessians. CSC 2016: 102-111 - 2015
- [j17]Mahantesh Halappanavar, Alex Pothen, Ariful Azad, Fredrik Manne, Johannes Langguth, Arif M. Khan:
Codesign Lessons Learned from Implementing Graph Matching on Multithreaded Architectures. Computer 48(8): 46-55 (2015) - [c31]Ariful Azad, Aydin Buluç, Alex Pothen:
A Parallel Tree Grafting Algorithm for Maximum Cardinality Matching in Bipartite Graphs. IPDPS 2015: 1075-1084 - [c30]Alex Pothen:
PCO Keynote. IPDPS Workshops 2015: 1108 - [c29]Alex Pothen:
How to match in parallel: approximation algorithms and multicore machines. IA3@SC 2015: 1:1 - 2014
- [i2]Ariful Azad, Bartek Rajwa, Alex Pothen:
Immunophenotypes of Acute Myeloid Leukemia From Flow Cytometry Data Using Templates. CoRR abs/1403.6358 (2014) - 2013
- [j16]Assefaw Hadish Gebremedhin, Duc C. Nguyen, Md. Mostofa Ali Patwary, Alex Pothen:
ColPack: Software for graph coloring and related problems in scientific computing. ACM Trans. Math. Softw. 40(1): 1:1-1:31 (2013) - [c28]Ariful Azad, Arif M. Khan, Bartek Rajwa, Saumyadipta Pyne, Alex Pothen:
Classifying Immunophenotypes With Templates From Flow Cytometry. BCB 2013: 256 - 2012
- [j15]Ariful Azad, Saumyadipta Pyne, Alex Pothen:
Matching phosphorylation response patterns of antigen-receptor-stimulated T cells via flow cytometry. BMC Bioinform. 13(S-2): S10 (2012) - [j14]Mahantesh Halappanavar, John Feo, Oreste Villa, Antonino Tumeo, Alex Pothen:
Approximate weighted matching on emerging manycore and multithreaded architectures. Int. J. High Perform. Comput. Appl. 26(4): 413-430 (2012) - [j13]Ümit V. Çatalyürek, John Feo, Assefaw Hadish Gebremedhin, Mahantesh Halappanavar, Alex Pothen:
Graph coloring algorithms for multi-core and massively multithreaded architectures. Parallel Comput. 38(10-11): 576-594 (2012) - [c27]Ariful Azad, Mahantesh Halappanavar, Sivasankaran Rajamanickam, Erik G. Boman, Arif M. Khan, Alex Pothen:
Multithreaded Algorithms for Maxmum Matching in Bipartite Graphs. IPDPS 2012: 860-872 - [c26]Ariful Azad, Alex Pothen:
Multithreaded Algorithms for Matching in Graphs with Application to Data Analysis in Flow Cytometry. IPDPS Workshops 2012: 2494-2497 - [c25]Arif M. Khan, David F. Gleich, Alex Pothen, Mahantesh Halappanavar:
A multithreaded algorithm for network alignment via approximate matching. SC 2012: 64 - [i1]Ümit V. Çatalyürek, John Feo, Assefaw Hadish Gebremedhin, Mahantesh Halappanavar, Alex Pothen:
Graph Coloring Algorithms for Muti-core and Massively Multithreaded Architectures. CoRR abs/1205.3809 (2012) - 2011
- [c24]Md. Mostofa Ali Patwary, Assefaw Hadish Gebremedhin, Alex Pothen:
New Multithreaded Ordering and Coloring Algorithms for Multicore Architectures. Euro-Par (2) 2011: 250-262 - [c23]Ümit V. Çatalyürek, Florin Dobrian, Assefaw Hadish Gebremedhin, Mahantesh Halappanavar, Alex Pothen:
Distributed-Memory Parallel Algorithms for Matching and Coloring. IPDPS Workshops 2011: 1971-1980 - [c22]Ariful Azad, Mahantesh Halappanavar, Florin Dobrian, Alex Pothen:
Computing maximum matching in parallel on bipartite graphs: worth the effort? IA3@SC 2011: 11-14 - 2010
- [c21]Emad Y. Ramadan, Christopher Osgood, Alex Pothen:
Discovering overlapping modules and bridge proteins in proteomic networks. BCB 2010: 366-369 - [c20]Ariful Azad, Johannes Langguth, Youhan Fang, Yuan (Alan) Qi, Alex Pothen:
Identifying Rare Cell Populations in Comparative Flow Cytometry. WABI 2010: 162-175
2000 – 2009
- 2009
- [j12]Assefaw Hadish Gebremedhin, Arijit Tarafdar, Alex Pothen, Andrea Walther:
Efficient Computation of Sparse Hessians Using Coloring and Automatic Differentiation. INFORMS J. Comput. 21(2): 209-223 (2009) - [c19]Michelle Mills Strout, Nissa Osheim, Dave Rostron, Paul D. Hovland, Alex Pothen:
Evaluation of Hierarchical Mesh Reorderings. ICCS (1) 2009: 540-549 - 2007
- [j11]Assefaw Hadish Gebremedhin, Arijit Tarafdar, Fredrik Manne, Alex Pothen:
New Acyclic and Star Coloring Algorithms with Application to Computing Hessians. SIAM J. Sci. Comput. 29(3): 1042-1072 (2007) - 2006
- [c18]Bruce Hendrickson, Alex Pothen:
Combinatorial Scientific Computing: The Enabling Power of Discrete Algorithms in Computational Science. VECPAR 2006: 260-280 - 2005
- [j10]Assefaw Hadish Gebremedhin, Fredrik Manne, Alex Pothen:
What Color Is Your Jacobian? Graph Coloring for Computing Derivatives. SIAM Rev. 47(4): 629-705 (2005) - [c17]Emad Y. Ramadan, Christopher Osgood, Alex Pothen:
The Architecture of a Proteomic Network in the Yeast. CompLife 2005: 265-276 - 2004
- [j9]Michael Wagner, Dayanand N. Naik, Alex Pothen, Srinivas Kasukurti, Raghu Ram Devineni, Bao-Ling Adam, O. John Semmes, George L. Wright Jr.:
Computational protein biomarker prediction: a case study for prostate cancer. BMC Bioinform. 5: 26 (2004) - [c16]Emad Y. Ramadan, Arijit Tarafdar, Alex Pothen:
A Hypergraph Model for the Yeast Protein Complex Network. IPDPS 2004 - [c15]Florin Dobrian, Alex Pothen:
Oblio: Design and Performance. PARA 2004: 758-767 - [r1]Alex Pothen, Sivan Toledo:
Elimination Structures in Scientific Computing. Handbook of Data Structures and Applications 2004 - 2002
- [c14]Assefaw Hadish Gebremedhin, Fredrik Manne, Alex Pothen:
Parallel Distance-k Coloring Algorithms for Numerical Optimization. Euro-Par 2002: 912-921 - 2001
- [j8]David Hysom, Alex Pothen:
A Scalable Parallel Algorithm for Incomplete Factor Preconditioning. SIAM J. Sci. Comput. 22(6): 2194-2215 (2001) - [c13]Florin Dobrian, Alex Pothen:
The design of I/O-efficient sparse direct solvers. SC 2001: 39
1990 – 1999
- 1999
- [c12]Florin Dobrian, Alex Pothen:
Object-Oriented Parallel Factorization for Sparse Symmetric Systems. PP 1999 - [c11]David Hysom, Alex Pothen:
Parallel Computation of ILU(k) Preconditioners Without Serial Bottlenecks. PP 1999 - [c10]David Hysom, Alex Pothen:
Efficient Parallel Computation of ILU(k) Preconditioners. SC 1999: 29 - 1998
- [c9]Gary Kumfert, Alex Pothen:
An Object-Oriented Collection of Minimum Degree Algorithms. ISCOPE 1998: 95-106 - [c8]Florin Dobrian, Gary Kumfert, Alex Pothen:
Object-Oriented Design for Sparse Direct Solvers. ISCOPE 1998: 207-214 - 1997
- [j7]Alan George, Alex Pothen:
An Analysis of Spectral Envelope Reduction via Quadratic Assignment Problems. SIAM J. Matrix Anal. Appl. 18(3): 706-732 (1997) - 1996
- [c7]Ion Stoica, Alex Pothen:
A robust and flexible microeconomic scheduler for parallel computers. HiPC 1996: 406-412 - 1995
- [j6]Stephen T. Barnard, Alex Pothen, Horst D. Simon:
A spectral algorithm for envelope reduction of sparse matrices. Numer. Linear Algebra Appl. 2(4): 317-334 (1995) - [j5]Richard A. Brualdi, Shmuel Friedland, Alex Pothen:
The Sparse Basis Problem and Multilinear Algebra. SIAM J. Matrix Anal. Appl. 16(1): 1-20 (1995) - [c6]Ion Stoica, Hussein M. Abdel-Wahab, Alex Pothen:
A Microeconomic Scheduler for Parallel Computers. JSSPP 1995: 200-218 - 1994
- [j4]Nicholas J. Higham, Alex Pothen:
Stability of the Partitioned Inverse Method for Parallel Solution of Sparse Triangular Systems. SIAM J. Sci. Comput. 15(1): 139-148 (1994) - 1993
- [j3]Alex Pothen, Chunguang Sun:
A Mapping Algorithm for Parallel Sparse Cholesky Factorization. SIAM J. Sci. Comput. 14(5): 1253-1257 (1993) - [c5]Stephen T. Barnard, Alex Pothen, Horst D. Simon:
A spectral algorithm for envelope reduction of sparse matrices. SC 1993: 493-502 - 1992
- [j2]Alex Pothen, Fernando L. Alvarado:
A Fast Reordering Algorithm for Parallel Sparse Triangular Solution. SIAM J. Sci. Comput. 13(2): 645-653 (1992) - [c4]Alex Pothen, Horst D. Simon, Lie Wang, Stephen T. Barnard:
Towards a Fast Implementation of Spectral Nested Dissection. SC 1992: 42-51 - 1991
- [c3]Alex Pothen, Chunguang Sun:
Distributed Multifrontal Factorization Using Clique Trees. PP 1991: 34-40 - 1990
- [j1]Alex Pothen, Chin-Ju Fan:
Computing the block triangular form of a sparse matrix. ACM Trans. Math. Softw. 16(4): 303-324 (1990)
1980 – 1989
- 1989
- [c2]Alex Pothen, Horst D. Simon:
Spectral Algorithms for Ordering Sparse Matrices in Parallel. PP 1989: 120-121 - 1988
- [c1]Alex Pothen, Padma Raghavan:
Distributed orthogonal factorization. C³P 1988: 1610-1620
Coauthor Index
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