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ORCIDOswaldo Trelles
Oswaldo Trelles-Salazar
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- affiliation: University of Málaga, Spain
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2020 – today
- 2023
[j33]Esteban Pérez-Wohlfeil
, Oswaldo Trelles, Nicolás Guil:
Irregular alignment of arbitrarily long DNA sequences on GPU. J. Supercomput. 79(8): 8699-8728 (2023)- 2020
- [j32]Eugenia Ulzurrun, Yorley Duarte, Esteban Pérez-Wohlfeil, Fernando D. González Nilo, Oswaldo Trelles:
PLIDflow: an open-source workflow for the online analysis of protein-ligand docking using galaxy. Bioinform. 36(14): 4203-4205 (2020)
2010 – 2019
- 2018
- [j31]Sergio Díaz Del Pino, Juan Falgueras Cano, Esteban Pérez-Wohlfeil, Oswaldo Trelles:
mORCA: sailing bioinformatics world with mobile devices. Bioinform. 34(5): 869-870 (2018) - [j30]Esteban Pérez-Wohlfeil, Oswaldo Trelles:
Precise and Parallel Pairwise Metagenomic Comparisons. J. Comput. Biol. 25(8): 841-849 (2018) - [c36]Ricardo Holthausen, Sergio Díaz Del Pino, Esteban Pérez-Wohlfeil, Pablo Rodríguez-Brazzarola, Oswaldo Trelles:
Workflows and Service Discovery: A Mobile Device Approach. IWBBIO (1) 2018: 177-185 - [c35]Pablo Rodríguez-Brazzarola, Esteban Pérez-Wohlfeil, Sergio Díaz Del Pino, Ricardo Holthausen, Oswaldo Trelles:
Analyzing the Differences Between Reads and Contigs When Performing a Taxonomic Assignment Comparison in Metagenomics. IWBBIO (1) 2018: 450-460 - 2017
- [j29]Óscar Torreño Tirado, Oswaldo Trelles:
Two level parallelism and I/O reduction in genome comparisons. Clust. Comput. 20(3): 1925-1936 (2017) - [j28]Michael T. Krieger, Óscar Torreño Tirado, Oswaldo Trelles, Dieter Kranzlmüller:
Building an open source cloud environment with auto-scaling resources for executing bioinformatics and biomedical workflows. Future Gener. Comput. Syst. 67: 329-340 (2017) - [c34]Esteban Pérez-Wohlfeil, Óscar Torreño Tirado, Oswaldo Trelles:
Accelerating Exhaustive Pairwise Metagenomic Comparisons. ICA3PP 2017: 611-620 - [c33]Esteban Pérez-Wohlfeil, Óscar Torreño Tirado, Oswaldo Trelles:
Pairwise and Incremental Multi-stage Alignment of Metagenomes: A New Proposal. IWBBIO (2) 2017: 74-80 - 2016
- [j27]Alex Upton, Oswaldo Trelles, José Antonio Cornejo-García, James Richard Perkins:
Review: High-performance computing to detect epistasis in genome scale data sets. Briefings Bioinform. 17(3): 368-379 (2016) - [c32]Alex Upton, Johan Karlsson, Oswaldo Trelles, Miguel Hernandez, Juan Elvira:
A Framework for Accessible Cluster-Enabled Epistatic Analysis. Euro-Par Workshops 2016: 433-444 - [c31]Óscar Torreño Tirado, Oswaldo Trelles:
Two-Level Parallelism to Accelerate Multiple Genome Comparisons. Euro-Par Workshops 2016: 445-456 - 2015
- [j26]Óscar Torreño Tirado, Oswaldo Trelles:
Breaking the computational barriers of pairwise genome comparison. BMC Bioinform. 16: 250:1-250:13 (2015) - [c30]Jose A. Arjona-Medina, Oswaldo Trelles:
Computational Synteny Block: A framework to identify evolutionary events. BIBM 2015: 5-12 - [c29]Alex Upton, Oswaldo Trelles, James Richard Perkins:
Epistatic Analysis of Clarkson Disease. ICCS 2015: 725-734 - [c28]Óscar Torreño Tirado, Michael T. Krieger, Paul Heinzlreiter, Oswaldo Trelles:
Pairwise Genome Comparison Workflow in the Cloud Using Galaxy. ICCS 2015: 2864-2868 - [c27]Sergio Díaz Del Pino, Tor Johan Mikael Karlsson, Juan Falgueras Cano, Oswaldo Trelles:
Mobile Access to On-line Analytic Bioinformatics Tools. IWBBIO (2) 2015: 555-565 - 2014
- [c26]Paul Heinzlreiter, James Richard Perkins, Óscar Torreño Tirado, Tor Johan Mikael Karlsson, Juan Antonio Ranea, Andreas Mitterecker, Miguel Blanca, Oswaldo Trelles:
A Cloud-based GWAS Analysis Pipeline for Clinical Researchers. CLOSER 2014: 387-394 - 2013
- [j25]Tor Johan Mikael Karlsson, Oswaldo Trelles:
MAPI: a software framework for distributed biomedical applications. J. Biomed. Semant. 4: 4 (2013) - [c25]Andrés Rodríguez Moreno, Óscar Torreño Tirado, Oswaldo Trelles-Salazar:
Out of Core Computation of HSPs for Large Biological Sequences. IWANN (2) 2013: 189-199 - [c24]Tor Johan Mikael Karlsson, Óscar Torreño Tirado, Daniel Ramet Barea, Juan Lago, Juan Falgueras Cano, Noura Chelbat, Oswaldo Trelles:
Bio-Cirrus: A Framework for Running Legacy Bioinformatics Applications with Cloud Computing Resources. IWANN (2) 2013: 200-207 - 2012
- [c23]Tor Johan Mikael Karlsson, Óscar Torreño Tirado, Daniel Ramet Barea, Günter Klambauer, Miriam Cano Castillo, Oswaldo Trelles:
Enabling Large-Scale Bioinformatics Data Analysis with Cloud Computing. ISPA 2012: 640-645 - 2011
- [j24]Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi:
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomed. Semant. 2: 4 (2011) - [j23]Sergio Ramírez, Tor Johan Mikael Karlsson, Oswaldo Trelles:
MAPI: towards the integrated exploitation of bioinformatics Web Services. BMC Bioinform. 12: 419 (2011) - [c22]Andrés Rodríguez Moreno, Oswaldo Trelles, Manuel Ujaldon:
Using Graphics Processors for a High Performance Normalization of Gene Expressions. HPCC 2011: 599-604 - 2010
- [j22]Victoria Martin-Requena, Javier Ríos, Maximiliano García, Sergio Ramírez, Oswaldo Trelles:
jORCA: easily integrating bioinformatics Web Services. Bioinform. 26(4): 553-559 (2010) - [j21]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010) - [j20]Sergio Ramírez, Antonio Muñoz-Merida, Tor Johan Mikael Karlsson, Maximiliano García, Antonio J. Pérez-Pulido, M. Gonzalo Claros, Oswaldo Trelles:
MOWServ: a web client for integration of bioinformatic resources. Nucleic Acids Res. 38(Web-Server-Issue): 671-676 (2010) - [c21]Maximiliano García, Tor Johan Mikael Karlsson, Oswaldo Trelles:
Web service catalogue for Biomedical Grid infrastructure. HealthGrid 2010: 76-87 - [c20]Tor Johan Mikael Karlsson, Victoria Martin-Requena, Javier Ríos, Oswaldo Trelles:
Workflow Composition and Enactment Using jORCA. ISoLA (1) 2010: 328-339 - [c19]Antonio Muñoz-Merida, Javier Ríos, Hicham Benzekri, Oswaldo Trelles:
Statistical Significance for NGS Reads Similarities. JBI 2010: 1-7 - [c18]Tor Johan Mikael Karlsson, Oswaldo Trelles:
jORCA and Magallanes Sailing Together towards Integration of Web Services. JBI 2010: 94-101
2000 – 2009
- 2009
- [j19]Victoria Martin-Requena, Antonio Muñoz-Merida, M. Gonzalo Claros, Oswaldo Trelles:
PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data. BMC Bioinform. 10 (2009) - [j18]Javier Ríos, Tor Johan Mikael Karlsson, Oswaldo Trelles:
Magallanes: a web services discovery and automatic workflow composition tool. BMC Bioinform. 10: 334 (2009) - 2008
- [j17]Sacha A. F. T. van Hijum, Richard J. S. Baerends, Aldert L. Zomer, Harma A. Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P. Kuipers:
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons. BMC Bioinform. 9 (2008) - [c17]Manolis Tsiknakis, Stelios Sfakianakis, Stefan Rüping, Oswaldo Trelles, Thierry Siestang, Brecht Claerhout, Vassilis Virvilis:
A Semantic Grid Services Architecture in Support of Efficient Knowledge Discovery from Multilevel Clinical and Genomic Datasets. HEALTHINF (1) 2008: 279-287 - 2007
- [c16]Sergio Ramírez, Hugo Rosales, Oswaldo Trelles:
On-line Distance Learning Platform. WEBIST (3) 2007: 500-505 - 2006
- [j16]Ismael Navas-Delgado, Maria del Mar Rojano-Muñoz, Sergio Ramírez, Antonio J. Pérez-Pulido, Eduardo Andrés León, José Francisco Aldana Montes, Oswaldo Trelles:
Intelligent client for integrating bioinformatics services. Bioinform. 22(1): 106-111 (2006) - [j15]Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano:
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7: 54 (2006) - [j14]José Francisco Aldana Montes, M. Roldán-Castro, Ismael Navas-Delgado, María del Mar Roldán García, Manuel Hidalgo-Conde, Oswaldo Trelles:
Bio-Broker: a tool for integration of biological data sources and data analysis tools. Softw. Pract. Exp. 36(14): 1585-1604 (2006) - [c15]Ismael Navas-Delgado, Antonio J. Pérez-Pulido, José Francisco Aldana Montes, Oswaldo Trelles:
Distributed Execution of Workflows in the INB. DILS 2006: 224-231 - [c14]Ismael Navas-Delgado, José Francisco Aldana Montes, Oswaldo Trelles:
Distributed Execution of Workflows. International Conference on Computational Science (3) 2006: 936-939 - 2005
- [j13]Andrés Rodríguez Moreno, José María Carazo, Oswaldo Trelles-Salazar:
Mining association rules from biological databases. J. Assoc. Inf. Sci. Technol. 56(5): 493-504 (2005) - [j12]Andrés Rodríguez Moreno, Nicolás Guil, David M. Shotton, Oswaldo Trelles:
Analysis and Description of the Semantic Content of Cell Biological Videos. Multim. Tools Appl. 25(1): 37-58 (2005) - [c13]Manuel Hidalgo-Conde, Andrés Rodríguez Moreno, Sergio Ramírez, Oswaldo Trelles:
Adaptive Task Scheduling in Computational GRID Environments. EGC 2005: 880-890 - [c12]José Francisco Aldana Montes, Manuel Hidalgo-Conde, Ismael Navas-Delgado, María del Mar Roldán García, Oswaldo Trelles:
Bio-Broker: a biological data and services mediator system. IADIS AC 2005: 527-534 - [c11]Luis F. Romero, Oswaldo Trelles, M. A. Trelles:
Real-Time Simulation for Laser-Tissue Interaction Model. PARCO 2005: 415-422 - [c10]Sergio Ramírez, Enrique de-Andrés, Ismael Navas-Delgado, Antonio J. Pérez-Pulido, José Francisco Aldana Montes, Oswaldo Trelles:
Services Integration and Task-scheduling in Bioinformatics Grids. PARCO 2005: 735-742 - 2004
- [j11]Antonio J. Pérez-Pulido, Guillermo Thode, Oswaldo Trelles:
AnaGram: protein function assignment. Bioinform. 20(2): 291-292 (2004) - [j10]Andrés Rodríguez Moreno, Nicolás Guil, David M. Shotton, Oswaldo Trelles:
Automatic analysis of the content of cell biological videos and database organization of their metadata descriptors. IEEE Trans. Multim. 6(1): 119-128 (2004) - [c9]José Francisco Aldana Montes, Manuel Hidalgo-Conde, Ismael Navas-Delgado, María del Mar Roldán García, Pedro A. de Alarcón, Oswaldo Trelles:
An Open Architecture for the Dynamic Integration of Biological Data Sources. CCCT (1) 2004: 239-244 - 2003
- [j9]Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano:
Engene: the processing and exploratory analysis of gene expression data. Bioinform. 19(5): 657-658 (2003) - [j8]Jorge García de la Nava, Sacha A. F. T. van Hijum, Oswaldo Trelles:
PreP: gene expression data pre-processing. Bioinform. 19(17): 2328-2329 (2003) - [c8]Olga M. Perez, Manuel Hidalgo-Conde, Francisco Javier Marín Martín, Oswaldo Trelles:
Weighting and Feature Selection on Gene-Expression Data by the Use of Genetic Algorithms. IWANN (2) 2003: 377-384 - 2002
- [j7]Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles:
Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE). Softw. Pract. Exp. 32(9): 873-887 (2002) - 2001
- [j6]Oswaldo Trelles:
On the Parallelisation of Bioinformatics Applications. Briefings Bioinform. 2(2): 181-219 (2001) - [c7]Olga M. Perez, Francisco Javier Marín Martín, Oswaldo Trelles:
Improving Biological Sequence Property Distances by Using a Genetic Algorithm. IWANN (2) 2001: 539-546 - 2000
- [c6]David M. Shotton, Andrés Rodríguez Moreno, Nicolás Guil, Oswaldo Trelles:
Object Tracking and Event Recognition in Biological Microscopy Videos. ICPR 2000: 4226-4229 - [c5]Andrés Rodríguez Moreno, David M. Shotton, Nicolás Guil, Oswaldo Trelles:
Automatic Tracking of Moving Bacterial Cells in Scientific Videos. RIAO 2000: 620-628 - [c4]Andrés Rodríguez Moreno, David M. Shotton, Oswaldo Trelles, Nicolás Guil:
Automatic Feature extraction in Wound Healing Videos. RIAO 2000: 629-636
1990 – 1999
- 1998
- [j5]Oswaldo Trelles, Miguel A. Andrade, Alfonso Valencia, Emilio L. Zapata, José María Carazo:
Computational space reduction and parallelization of a new clustering approach for large groups of sequences. Bioinform. 14(5): 439-451 (1998) - [j4]Oswaldo Trelles, C. Ceron, Huaichun Wang, Joaquín Dopazo, José María Carazo:
New phylogenetic venues opened by a novel implementation of the DNAml algorithm. Bioinform. 14(6): 544-545 (1998) - [j3]C. Ceron, Joaquín Dopazo, Emilio L. Zapata, José María Carazo, Oswaldo Trelles:
Parallel Implementation of DNAml Program on Message-Passing Architectures. Parallel Comput. 24(5-6): 701-716 (1998) - [c3]Andrés Rodríguez Moreno, Luis Gerardo de la Fraga, Emilio L. Zapata, José María Carazo, Oswaldo Trelles:
Biological sequence analysis on distributed-shared memory multiprocessors. PDP 1998: 20-26 - 1995
- [j2]Oswaldo Trelles-Salazar, Emilio L. Zapata, Joaquín Dopazo, A. F. Coulson, José María Carazo:
An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data. Comput. Appl. Biosci. 11(3): 301-308 (1995) - 1994
- [j1]Oswaldo Trelles-Salazar, Emilio L. Zapata, José María Carazo:
On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures. Comput. Appl. Biosci. 10(5): 509-511 (1994) - [c2]Oswaldo Trelles-Salazar, Emilio L. Zapata, José María Carazo:
Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-Based Message Passing Architectures. HPCN 1994: 197-202 - [c1]Francisco Javier Marín Martín, Oswaldo Trelles-Salazar, Francisco Sandoval Hernández:
Genetic Algorithms on LAN-message Passing Architectures using PVM: Application to the Routing Problem. PPSN 1994: 534-543
Coauthor Index
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