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ORCIDMichel Dumontier
Michel Justin Dumontier
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- affiliation: Maastricht University, The Netherlands
- affiliation (former): Carleton University, Ottawa, Canada
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2020 – today
- 2024
[j102]Amrapali Zaveri
, Pedro V. Hernandez Serrano, Michel Dumontier:
CrowdED 1.0: Statistical Guideline for Designing Optimal Crowdsourcing Experiments. Hum. Comput. 11(1): 29-46 (2024)- [j101]Claus Stadler, Muhammad Saleem, Qaiser Mehmood, Carlos Buil-Aranda, Michel Dumontier, Aidan Hogan, Axel-Cyrille Ngonga Ngomo:
LSQ 2.0: A linked dataset of SPARQL query logs. Semantic Web 15(1): 167-189 (2024) - [j100]Sabrina Kirrane, Oshani Seneviratne, Michel Dumontier:
Editorial of the special issue on semantic technologies for data and algorithmic governance. Semantic Web 15(3): 643-645 (2024) - [c85]Michel Dumontier:
Towards Biomedical Neurosymbolic AI: From Knowledge Infrastructure to Explainable Predictions. SeWeBMeDA@ESWC 2024 - [e13]Ali Hasnain, Alba Catalina Morales Tirado, Michel Dumontier, Dietrich Rebholz-Schuhmann:
Proceedings of the 7th Workshop on Semantic Web solutions for large-scale biomedical data analytics co-located with The ESWC 2024: Extended Semantic Web Conference (ESWC 2024), Hersonissos, Greece, May 26, 2024. CEUR Workshop Proceedings 3726, CEUR-WS.org 2024 [contents] - [i36]Gijs Wijngaard, Elia Formisano, Bruno L. Giordano, Michel Dumontier:
ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. CoRR abs/2403.18572 (2024) - [i35]N'Dah Jean Kouagou, Arif Yilmaz, Michel Dumontier, Axel-Cyrille Ngonga Ngomo:
Improving rule mining via embedding-based link prediction. CoRR abs/2406.10144 (2024) - [i34]Mahmoud Ibrahim, Yasmina Al Khalil, Sina Amirrajab, Chang Sun, Marcel Breeuwer, Josien P. W. Pluim, Bart Elen, Gokhan Ertaylan, Michel Dumontier:
Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges. CoRR abs/2407.00116 (2024) - [i33]Gijs Wijngaard, Elia Formisano, Michele Esposito, Michel Dumontier:
Audio-Language Datasets of Scenes and Events: A Survey. CoRR abs/2407.06947 (2024) - 2023
- [j99]Onaopepo Adekunle, Arno Riedl, Michel Dumontier:
Evidence From Data Science on the Relationship Between Individual Beliefs/Behaviors Survey During COVID-19 Pandemic and Risk Preference. Adv. Artif. Intell. Mach. Learn. 3(4): 1800-1824 (2023) - [j98]Chang Sun, Johan van Soest, Michel Dumontier:
Generating synthetic personal health data using conditional generative adversarial networks combining with differential privacy. J. Biomed. Informatics 143: 104404 (2023) - [j97]Chang Sun, Marc Gallofré Ocaña, Johan van Soest, Michel Dumontier:
ciTIzen-centric DAta pLatform (TIDAL): Sharing distributed personal data in a privacy-preserving manner for health research. Semantic Web 14(5): 977-996 (2023) - [c84]Weiwei Wang, Stefano Bromuri, Michel Dumontier:
Graph-based Categorical Embedding. ESANN 2023 - [c83]Franz Krause, Xi Yan, Baptiste Darnala, Michel Dumontier:
On the Combination of Event Calculus and Empirical Semantic Drifts. ESWC Workshops 2023 - [c82]Gijs Wijngaard, Elia Formisano, Bruno L. Giordano, Michel Dumontier:
ACES: Evaluating Automated Audio Captioning Models on the Semantics of Sounds. EUSIPCO 2023: 770-774 - [c81]Michele Esposito, Giancarlo Valente, Yenisel Plasencia Calaña, Michel Dumontier, Bruno L. Giordano, Elia Formisano:
Semantically-Informed Deep Neural Networks For Sound Recognition. ICASSP 2023: 1-5 - [c80]Julie Loesch, Michel Dumontier, Remzi Celebi:
Enhanced GAT: Expanding Receptive Field with Meta Path-Guided RDF Rules for Two-Hop Connectivity. QALD/SemREC@ISWC 2023 - [c79]Elif Ozkan, Remzi Celebi, Arif Yilmaz, Vincent Emonet, Michel Dumontier:
Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions. SWAT4HCLS 2023: 22-31 - [c78]Chang Sun, Johan van Soest, Michel Dumontier:
Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated Learning. SWAT4HCLS 2023: 169-170 - [e12]Ali Hasnain, Tracy Robson, Michel Dumontier, Alba Catalina Morales Tirado, Dietrich Rebholz-Schuhmann:
Proceedings of the 6th Workshop on Semantic Web Solutions for Large-Scale Biomedical Data Analytics co-located with ESWC 2023, Hersonissos, Greece, May 29, 2023. CEUR Workshop Proceedings 3466, CEUR-WS.org 2023 [contents] - [e11]Ali Hasnain, Tracy Robson, Michel Dumontier:
Proceedings of the 5th Workshop on Semantic Web solutions for large-scale biomedical data analytics co-located with the Extended Semantic Web Conference (ESWC 2022), Hersonissos, Greece, May 29, 2022. CEUR Workshop Proceedings 3573, CEUR-WS.org 2023 [contents] - [i32]Visara Urovi, Remzi Celebi, Chang Sun, Linda Rieswijk, Michael Erard, Arif Yilmaz, Kody Moodley, Parveen Kumar, Michel Dumontier:
TAPS Responsibility Matrix: A tool for responsible data science by design. CoRR abs/2302.01041 (2023) - [i31]Carlos Utrilla Guerrero, Maria Vivas Romero, Marc Dolman, Michel Dumontier:
FAIR Begins at home: Implementing FAIR via the Community Data Driven Insights. CoRR abs/2303.07429 (2023) - [i30]Onaopepo Adekunle, Arno Riedl, Michel Dumontier:
Models towards Risk Behavior Prediction and Analysis: A Netherlands Case study. CoRR abs/2311.04164 (2023) - 2022
- [j96]Rajaram Kaliyaperumal, Mark D. Wilkinson, Pablo Alarcón Moreno, Nirupama Benis, Ronald Cornet, Bruna dos Santos Vieira, Michel Dumontier, César Henrique Bernabé, Annika Jacobsen, Clémence M. A. Le Cornec, Mario Prieto Godoy, Núria Queralt-Rosinach, Leo J. Schultze Kool, Morris A. Swertz, Philip van Damme, K. Joeri van der Velde, Nawel Lalout, Shuxin Zhang, Marco Roos:
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. J. Biomed. Semant. 13(1): 9 (2022) - [j95]Michel Dumontier:
A formalization of one of the main claims of "The FAIR Guiding Principles for scientific data management and stewardship" by Wilkinson et al. 20161. Data Sci. 5(1): 53-56 (2022) - [j94]Chang Sun, Johan van Soest, Annemarie Koster, Simone J. P. M. Eussen, Miranda T. Schram, Coen D. A. Stehouwer, Pieter C. Dagnelie, Michel Dumontier:
Studying the association of diabetes and healthcare cost on distributed data from the Maastricht Study and Statistics Netherlands using a privacy-preserving federated learning infrastructure. J. Biomed. Informatics 134: 104194 (2022) - [j93]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Jan Hasenauer, Joseph L. Hellerstein, Henning Hermjakob, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Rahuman S. Malik-Sheriff, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, James C. Schaff, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr:
BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Res. 50(W1): 108-114 (2022) - [c77]Weiwei Wang, Yuchen Han, Stefano Bromuri, Michel Dumontier:
Semantic Correlation Graph Embedding. FUZZ-IEEE 2022: 1-10 - [c76]Julie Loesch, Louis Meeckers, Ilse van Lier, Alie de Boer, Michel Dumontier, Remzi Celebi:
Automated Identification of Food Substitutions Using Knowledge Graph Embeddings. SWAT4HCLS 2022: 19-28 - [c75]Chang Sun, Vincent Emonet, Michel Dumontier:
A Comprehensive Comparison of Automated FAIRness Evaluation Tools. SWAT4HCLS 2022: 44-53 - [c74]Olga L. Giraldo, Miguel Ruano, Robin A. Richardson, Remzi Celebi, Michel Dumontier, Tobias Kuhn:
Nanotate: Semantically Annotating Experimental Protocols with Nanopublications. SWAT4HCLS 2022: 64-73 - [i29]Visara Urovi, Vikas Jaiman, Arno Angerer, Michel Dumontier:
LUCE: A Blockchain-based data sharing platform for monitoring data license accountability and compliance. CoRR abs/2202.11646 (2022) - [i28]Bilal Shaikh, Lucian P. Smith, Dan Vasilescu, Gnaneswara Marupilla, Michael Wilson, Eran Agmon, Henry Agnew, Steven S. Andrews, Azraf Anwar, Moritz E. Beber, Frank T. Bergmann, David Brooks, Lutz Brusch, Laurence Calzone, Kiri Choi, Joshua Cooper, John Detloff, Brian Drawert, Michel Dumontier, G. Bard Ermentrout, James R. Faeder, Andrew P. Freiburger, Fabian Fröhlich, Akira Funahashi, Alan Garny, John H. Gennari, Padraig Gleeson, Anne Goelzer, Zachary B. Haiman, Joseph L. Hellerstein, Stefan Hoops, Jon C. Ison, Diego Jahn, Henry V. Jakubowski, Ryann Jordan, Matús Kalas, Matthias König, Wolfram Liebermeister, Synchon Mandal, Robert A. McDougal, J. Kyle Medley, Pedro Mendes, Robert Müller, Chris J. Myers, Aurélien Naldi, Tung V. N. Nguyen, David P. Nickerson, Brett G. Olivier, Drashti Patoliya, Loïc Paulevé, Linda R. Petzold, Ankita Priya, Anand K. Rampadarath, Johann M. Rohwer, Ali Sinan Saglam, Dilawar Singh, Ankur Sinha, Jacky L. Snoep, Hugh Sorby, Ryan K. Spangler, Jörn Starruß, Payton J. Thomas, David D. van Niekerk, Daniel Weindl, Fengkai Zhang, Anna Zhukova, Arthur P. Goldberg, Michael L. Blinov, Herbert M. Sauro, Ion I. Moraru, Jonathan R. Karr:
BioSimulators: a central registry of simulation engines and services for recommending specific tools. CoRR abs/2203.06732 (2022) - [i27]Deepak R. Unni, Sierra A. T. Moxon, Michael Bada, Matthew H. Brush, Richard M. Bruskiewich, Paul A. Clemons, Vlado Dancík, Michel Dumontier, Karamarie Fecho, Gustavo Glusman, Jennifer J. Hadlock, Nomi L. Harris, Arpita Joshi, Tim E. Putman, Guangrong Qin, Stephen A. Ramsey, Kent A. Shefchek, Harold Solbrig, Karthik Soman, Anne E. Thessen, Melissa A. Haendel, Chris Bizon, Christopher J. Mungall:
Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science. CoRR abs/2203.13906 (2022) - [i26]Chang Sun, Johan van Soest, Michel Dumontier:
Improving Correlation Capture in Generating Imbalanced Data using Differentially Private Conditional GANs. CoRR abs/2206.13787 (2022) - 2021
- [j92]Subhi Issa, Onaopepo Adekunle, Fayçal Hamdi, Samira Si-Said Cherfi, Michel Dumontier, Amrapali Zaveri:
Knowledge Graph Completeness: A Systematic Literature Review. IEEE Access 9: 31322-31339 (2021) - [j91]Kody Moodley, Linda Rieswijk, Tudor I. Oprea, Michel Dumontier:
InContext: curation of medical context for drug indications. J. Biomed. Semant. 12(1): 2 (2021) - [j90]Andreea Grigoriu, Amrapali Zaveri, Gerhard Weiss, Michel Dumontier:
SIENA: Semi-automatic semantic enhancement of datasets using concept recognition. J. Biomed. Semant. 12(1): 5 (2021) - [j89]Fadila Zerka, Visara Urovi, Fabio Bottari, Ralph T. H. Leijenaar, Sean Walsh, Hanif Gabrani-Juma, Martin Gueuning, Akshayaa Vaidyanathan, Wim Vos, Mariaelena Occhipinti, Henry C. Woodruff, Michel Dumontier, Philippe Lambin:
Privacy preserving distributed learning classifiers - Sequential learning with small sets of data. Comput. Biol. Medicine 136: 104716 (2021) - [j88]Chang Sun, Lianne Ippel, Andre Dekker, Michel Dumontier, Johan van Soest:
A systematic review on privacy-preserving distributed data mining. Data Sci. 4(2): 121-150 (2021) - [j87]Krist Shingjergji, Remzi Celebi, Jan C. Scholtes, Michel Dumontier:
Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines. J. Biomed. Informatics 122: 103902 (2021) - [j86]Stuti Nayak, Amrapali Zaveri, Pedro Hernandez Serrano, Michel Dumontier:
Experience: Automated Prediction of Experimental Metadata from Scientific Publications. ACM J. Data Inf. Qual. 13(4): 21:1-21:11 (2021) - [j85]Tobias Kuhn, Ruben Taelman, Vincent Emonet, Haris Antonatos, Stian Soiland-Reyes, Michel Dumontier:
Semantic micro-contributions with decentralized nanopublication services. PeerJ Comput. Sci. 7: e387 (2021) - [c73]Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos:
Reuse of Design Pattern Measurements for Health Data. JOWO 2021 - [c72]Robin A. Richardson, Remzi Celebi, Sven van der Burg, Djura Smits, Lars Ridder, Michel Dumontier, Tobias Kuhn:
User-friendly Composition of FAIR Workflows in a Notebook Environment. K-CAP 2021: 1-8 - [d1]Chang Sun, Vincent Emonet, Michel Dumontier:
Comparison results of FAIR Evaluation tools. Zenodo, 2021
- [i25]Robin A. Richardson, Remzi Celebi, Sven van der Burg, Djura Smits, Lars Ridder, Michel Dumontier, Tobias Kuhn:
User-friendly Composition of FAIR Workflows in a Notebook Environment. CoRR abs/2111.00831 (2021) - 2020
- [j84]Fadila Zerka, Visara Urovi, Akshayaa Vaidyanathan, Samir Barakat, Ralph T. H. Leijenaar, Sean Walsh, Hanif Gabrani-Juma, Benjamin Miraglio, Henry C. Woodruff, Michel Dumontier, Philippe Lambin:
Blockchain for Privacy Preserving and Trustworthy Distributed Machine Learning in Multicentric Medical Imaging (C-DistriM). IEEE Access 8: 183939-183951 (2020) - [j83]Paul Groth, Michel Dumontier:
Introduction - FAIR data, systems and analysis. Data Sci. 3(1): 1-2 (2020) - [j82]Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes:
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2(1-2): 10-29 (2020) - [j81]Oya Beyan, Ananya Choudhury, Johan van Soest, Oliver Kohlbacher, Lukas Zimmermann, Holger Stenzhorn, Md. Rezaul Karim, Michel Dumontier, Stefan Decker, Luiz Olavo Bonino da Silva Santos, Andre Dekker:
Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intell. 2(1-2): 96-107 (2020) - [j80]Ricardo de Miranda Azevedo, Michel Dumontier:
Considerations for the Conduction and Interpretation of FAIRness Evaluations. Data Intell. 2(1-2): 285-292 (2020) - [j79]Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier:
Towards FAIR protocols and workflows: the OpenPREDICT use case. PeerJ Comput. Sci. 6: e281 (2020) - [j78]Leyla J. García, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis E. Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez Del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi:
Ten simple rules for making training materials FAIR. PLoS Comput. Biol. 16(5) (2020) - [c71]Michel Dumontier:
Accelerating Discovery Science with an Internet of FAIR Data and Services. CIKM 2020: 3 - [c70]Pedro V. Hernandez Serrano, Kody Moodley, Gijs van Dijck, Michel Dumontier:
Sleeping Beauties in Case Law. JURIX 2020: 231-234 - [e10]C. Maria Keet, Michel Dumontier:
Knowledge Engineering and Knowledge Management - 22nd International Conference, EKAW 2020, Bolzano, Italy, September 16-20, 2020, Proceedings. Lecture Notes in Computer Science 12387, Springer 2020, ISBN 978-3-030-61243-6 [contents] - [i24]Nacira Abbas, Kholoud Alghamdi, Mortaza Alinam, Francesca Alloatti, Glenda C. M. Amaral, Claudia d'Amato, Luigi Asprino, Martin Beno, Felix Bensmann, Russa Biswas, Ling Cai, Riley Capshaw, Valentina Anita Carriero, Irene Celino, Amine Dadoun, Stefano De Giorgis, Harm Delva, John Domingue, Michel Dumontier, Vincent Emonet, Marieke van Erp, Paola Espinoza-Arias, Omaima Fallatah, Sebastián Ferrada, Marc Gallofré Ocaña, Michalis Georgiou, Genet Asefa Gesese, Frances Gillis-Webber, Francesca Giovannetti, María Granados Buey, Ismail Harrando, Ivan Heibi, Vitor A. C. Horta, Laurine Huber, Federico Igne, Mohamad Yaser Jaradeh, Neha Keshan, Aneta Koleva, Bilal Koteich, Kabul Kurniawan, Mengya Liu, Chuangtao Ma, Lientje Maas, Martin Mansfield, Fabio Mariani, Eleonora Marzi, Sepideh Mesbah, Maheshkumar Mistry, Alba Catalina Morales Tirado, Anna Nguyen, Viet Bach Nguyen, Allard Oelen, Valentina Pasqual, Heiko Paulheim, Axel Polleres, Margherita Porena, Jan Portisch, Valentina Presutti, Kader Pustu-Iren, Ariam Rivas Mendez, Soheil Roshankish, Sebastian Rudolph, Harald Sack, Ahmad Sakor, Jaime Salas, Thomas Schleider, Meilin Shi, Gianmarco Spinaci, Chang Sun, Tabea Tietz, Molka Tounsi Dhouib, Alessandro Umbrico, Wouter van den Berg, Weiqin Xu:
Knowledge Graphs Evolution and Preservation - A Technical Report from ISWS 2019. CoRR abs/2012.11936 (2020) - [i23]Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [j77]Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier:
GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures. IEEE Access 7: 8404-8415 (2019) - [j76]Remzi Celebi, Hüseyin Uyar, Erkan Yasar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier:
Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings. BMC Bioinform. 20(1): 726 (2019) - [j75]Amrapali Zaveri, Wei Hu, Michel Dumontier:
MetaCrowd: Crowdsourcing Biomedical Metadata Quality Assessment. Hum. Comput. 6: 98-112 (2019) - [c69]Tiffany I. Leung, Sima Pendharkar, Chwen-Yuen Angie Chen, Michel Dumontier:
Finding the evidence base using citation networks: Do 300 to 400 U.S. physicians die by suicide annually? AMIA 2019 - [c68]Kody Moodley, Pedro V. Hernandez Serrano, Gijs van Dijck, Michel Dumontier:
Similarity and Relevance of Court Decisions: A Computational Study on CJEU Cases. JURIX 2019: 63-72 - [c67]Chang Sun, Lianne Ippel, Johan van Soest, Birgit Wouters, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Ole Mussmann, Annemarie Koster, Carla van der Kallen, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier:
A Privacy-Preserving Infrastructure for Analyzing Personal Health Data in a Vertically Partitioned Scenario. MedInfo 2019: 373-377 - [c66]Tiffany I. Leung, Michel Dumontier:
FAIR Principles for Clinical Practice Guidelines in a Learning Health System. MedInfo 2019: 1690-1691 - [c65]Jamie P. McCusker, Michel Dumontier, Shruthi Chari, Joanne S. Luciano, Deborah L. McGuinness:
A Linked Data Representation for Summary Statistics and Grouping Criteria. SAWSemStats@ISWC 2019 - [c64]Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness:
Reflections on: Finding Melanoma Drugs Through a Probabilistic Knowledge Graph. JT@ISWC 2019 - [c63]Johan van Soest, Ananya Choudhury, Nikhil Gaikwad, Matthijs Sloep, Michel Dumontier, Andre Dekker:
Annotation of Existing Databases using Semantic Web Technologies: Making Data more FAIR. SWAT4HCLS 2019: 94-101 - [c62]Chang Sun, Vincent Emonet, Johan van Soest, Annemarie Koster, Andre Dekker, Michel Dumontier:
Transformation and Integration of Heterogeneous Health Data in a Privacy-preserving Distributed Learning Infrastructure. SWAT4HCLS 2019: 141-142 - [e9]Ali Hasnain, Vít Novácek, Michel Dumontier, Dietrich Rebholz-Schuhmann:
Proceedings of the Workshop on Semantic Web Solutions for Large-Scale Biomedical Data Analytics co-located with 18th International Semantic Web Conference (ISWC 2019), Auckland, New Zealand, October 27th, 2019. CEUR Workshop Proceedings 2477, CEUR-WS.org 2019 [contents] - [i22]Nadine Havelange, Michel Dumontier, Birgit Wouters, Jona Linde, David Townend, Arno Riedl, Visara Urovi:
LUCE: A Blockchain Solution for monitoring data License accoUntability and CompliancE. CoRR abs/1908.02287 (2019) - [i21]Erik-Jan van Kesteren, Chang Sun, Daniel L. Oberski, Michel Dumontier, Lianne Ippel:
Privacy-Preserving Generalized Linear Models using Distributed Block Coordinate Descent. CoRR abs/1911.03183 (2019) - [i20]Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier:
Towards FAIR protocols and workflows: The OpenPREDICT case study. CoRR abs/1911.09531 (2019) - [i19]Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2018
- [j74]Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier:
Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths. Bioinform. 34(5): 828-835 (2018) - [j73]Ruben Verborgh, Michel Dumontier:
A Web API Ecosystem through Feature-Based Reuse. IEEE Internet Comput. 22(3): 29-37 (2018) - [c61]Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno Ortiz, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier:
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. eScience 2018: 83-92 - [c60]Johan van Soest, Chang Sun, Ole Mussmann, Marco Puts, Bob van den Berg, Alexander Malic, Claudia van Oppen, David Townend, Andre Dekker, Michel Dumontier:
Using the Personal Health Train for Automated and Privacy-Preserving Analytics on Vertically Partitioned Data. MIE 2018: 581-585 - [c59]Remzi Çelebi, Erkan Yasar, Hüseyin Uyar, Özgür Gümüs, Oguz Dikenelli, Michel Dumontier:
Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction using Linked Open Data. SWAT4LS 2018 - [c58]Vincent Emonet, Amrapali Zaveri, Alexander Malic, Andreea Grigoriu, Michel Dumontier:
Data2Services: enabling automated conversion of data to services. SWAT4LS 2018 - [c57]Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V. Gkoutos, Michel Dumontier, Robert Hoehndorf:
Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings. SWAT4LS 2018 - [c56]Kody Moodley, Amrapali Zaveri, Chunlei Wu, Michel Dumontier:
A model for capturing provenance of assertions about chemical substances. SWAT4LS 2018 - [c55]Amrapali Zaveri, Pedro Hernandez Serrano, Manisha Desai, Michel Dumontier:
CrowdED: Guideline for Optimal Crowdsourcing Experimental Design. WWW (Companion Volume) 2018: 1109-1116 - [e8]Daniel Garijo, Natalia Villanueva-Rosales, Tobias Kuhn, Tomi Kauppinen, Michel Dumontier:
Proceedings of the Second Workshop on Enabling Open Semantic Science co-located with 17th International Semantic Web Conference, SemSci@ISWC 2018, Monterey, California, USA, October 8-12th, 2018. CEUR Workshop Proceedings 2184, CEUR-WS.org 2018 [contents] - [i18]Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic, Jorrit H. Poelen, Allen H. Hurlbert, Emilio Centeno, Laura I. Furlong, Núria Queralt-Rosinach, Christine Chichester, Juan M. Banda, Egon L. Willighagen, Friederike Ehrhart, Chris T. A. Evelo, Tareq B. Malas, Michel Dumontier:
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. CoRR abs/1809.06532 (2018) - [i17]Chang Sun, Lianne Ippel, Birgit Wouters, Johan van Soest, Alexander Malic, Onaopepo Adekunle, Bob van den Berg, Marco Puts, Ole Mussmann, Annemarie Koster, Carla van der Kallen, David Townend, Andre Dekker, Michel Dumontier:
Analyzing Partitioned FAIR Health Data Responsibly. CoRR abs/1812.00991 (2018) - 2017
- [j72]Wei Hu, Honglei Qiu, Jiacheng Huang, Michel Dumontier:
BioSearch: a semantic search engine for Bio2RDF. Database J. Biol. Databases Curation 2017: bax059 (2017) - [j71]Richard D. Boyce, Erica A. Voss, Vojtech Huser, Lee Evans, Christian G. Reich, Jon D. Duke, Nicholas P. Tatonetti, Tal Lorberbaum, Michel Dumontier, Manfred Hauben, Magnus Wallberg, Lili Peng, Sara Dempster, Yongqun He, Anthony G. Sena, Vassilis Koutkias, Pantelis Natsiavas, Patrick B. Ryan:
Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. J. Biomed. Semant. 8(1): 11:1-11:15 (2017) - [j70]Gabin Personeni, Emmanuel Bresso, Marie-Dominique Devignes, Michel Dumontier, Malika Smaïl-Tabbone, Adrien Coulet:
Discovering associations between adverse drug events using pattern structures and ontologies. J. Biomed. Semant. 8(1): 29:1-29:13 (2017) - [j69]Wei Hu, Amrapali Zaveri, Honglei Qiu, Michel Dumontier:
Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata. BMC Bioinform. 18(1): 415:1-415:12 (2017) - [j68]Michel Dumontier, Tobias Kuhn:
Data Science - Methods, infrastructure, and applications. Data Sci. 1(1-2): 1-5 (2017) - [j67]Tobias Kuhn, Michel Dumontier:
Genuine semantic publishing. Data Sci. 1(1-2): 139-154 (2017) - [j66]Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, Mark D. Wilkinson:
Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud. Inf. Serv. Use 37(1): 49-56 (2017) - [j65]Adeeb Noor, Abdullah Assiri, Serkan Ayvaz, Connor Clark, Michel Dumontier:
Drug-drug interaction discovery and demystification using Semantic Web technologies. J. Am. Medical Informatics Assoc. 24(3): 556-564 (2017) - [j64]Stuart J. Nelson, Tudor I. Oprea, Oleg Ursu, Cristian Bologa, Amrapali Zaveri, Jayme Holmes, Jeremy J. Yang, Stephen L. Mathias, Subramani Mani, Mark S. Tuttle, Michel Dumontier:
Formalizing drug indications on the road to therapeutic intent. J. Am. Medical Informatics Assoc. 24(6): 1169-1172 (2017) - [j63]Kathleen M. Jagodnik, Simon Koplev, Sherry L. Jenkins, Lucila Ohno-Machado, Benedict Paten, Stephan C. Schürer, Michel Dumontier, Ruben Verborgh, Alex Bui, Peipei Ping, Neil J. McKenna, Ravi K. Madduri, Ajay Pillai, Avi Ma'ayan:
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop. J. Biomed. Informatics 71: 49-57 (2017) - [j62]Maryam Panahiazar, Michel Dumontier, Olivier Gevaert:
Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). J. Biomed. Informatics 72: 132-139 (2017) - [j61]Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness:
Finding melanoma drugs through a probabilistic knowledge graph. PeerJ Comput. Sci. 3: e106 (2017) - [j60]Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier:
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Comput. Sci. 3: e110 (2017) - [c54]Mor Peleg, Tiffany I. Leung, Manisha Desai, Michel Dumontier:
Is Crowdsourcing Patient-Reported Outcomes the Future of Evidence-Based Medicine? A Case Study of Back Pain. AIME 2017: 245-255 - [c53]Amrapali Zaveri, Shima Dastgheib, Chunlei Wu, Trish Whetzel, Ruben Verborgh, Paul Avillach, Gabor Korodi, Raymond Terryn, Kathleen M. Jagodnik, Pedro Assis, Michel Dumontier:
smartAPI: Towards a More Intelligent Network of Web APIs. ESWC (2) 2017: 154-169 - [c52]Shima Dastgheib, Trish Whetzel, Amrapali Zaveri, Cyrus Afrasiabi, Pedro Assis, Paul Avillach, Kathleen M. Jagodnik, Gabor Korodi, Marcin Pilarczyk, Jeff de Pons, Stephan C. Schürer, Raymond Terryn, Ruben Verborgh, Chunlei Wu, Michel Dumontier:
The SmartAPI Ecosystem for Making Web APIs FAIR. ISWC (Posters, Demos & Industry Tracks) 2017 - [c51]Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community:
Bioschemas: schema.org for the Life Sciences. SWAT4LS 2017 - [c50]Remzi Çelebi, Özgün Erten, Michel Dumontier:
Machine Learning Based Drug Indication Prediction Using Linked Open Data. SWAT4LS 2017 - [e7]Ali Hasnain, Amit P. Sheth, Michel Dumontier, Dietrich Rebholz-Schuhmann:
Proceedings of the Workshop on Semantic Web Solutions for Large-scale Biomedical Data Analytics co-located with 14th Extended Semantic Web Conference, SeWeBMeDA@ESWC 2017, Portoroz, Slovenia, May 28, 2017. CEUR Workshop Proceedings 1948, CEUR-WS.org 2017 [contents] - [i16]Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Arnold Kuzniar, Anand Gavai, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier:
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 5: e2522 (2017) - 2016
- [j59]Anika Oellrich, Nigel Collier, Tudor Groza, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon, Prashanti Manda, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg, Michel Dumontier:
The digital revolution in phenotyping. Briefings Bioinform. 17(5): 819-830 (2016) - [j58]Lisa Posch, Maryam Panahiazar, Michel Dumontier, Olivier Gevaert:
Predicting structured metadata from unstructured metadata. Database J. Biol. Databases Curation 2016 (2016) - [j57]Lisa Posch, Maryam Panahiazar, Michel Dumontier, Olivier Gevaert:
Predicting structured metadata from unstructured metadata. Database J. Biol. Databases Curation 2016 (2016) - [j56]Tiffany I. Leung, Michel Dumontier:
Overlap in drug-disease associations between clinical practice guidelines and drug structured product label indications. J. Biomed. Semant. 7: 37 (2016) - [j55]Jerven T. Bolleman, Christopher J. Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Raoul Jean Pierre Bonnal, Robert M. Buels, Robert Hoehndorf, Takatomo Fujisawa, Toshiaki Katayama, Peter J. A. Cock:
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. J. Biomed. Semant. 7: 39 (2016) - [j54]Karin Verspoor, Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra, Larisa N. Soldatova, Michel Dumontier, Nigam Shah:
Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop. J. Biomed. Semant. 7: 66:1-66:4 (2016) - [j53]Jonathan M. Mortensen, Natalie Telis, Jacob J. Hughey, Hua Fan-Minogue, Kimberly Van Auken, Michel Dumontier, Mark A. Musen:
Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology. J. Biomed. Informatics 60: 199-209 (2016) - [j52]Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier:
Decentralized provenance-aware publishing with nanopublications. PeerJ Comput. Sci. 2: e78 (2016) - [j51]Núria Queralt-Rosinach, Tobias Kuhn, Christine Chichester, Michel Dumontier, Ferran Sanz, Laura I. Furlong:
Publishing DisGeNET as nanopublications. Semantic Web 7(5): 519-528 (2016) - [c49]David J. Odgers, Natalie Telis, Heather Hall, Michel Dumontier:
Using LASSO Regression to Predict Rheumatoid Arthritis Treatment Efficacy. CRI 2016 - [c48]Jan Kralj, Anze Vavpetic, Michel Dumontier, Nada Lavrac:
Network Ranking Assisted Semantic Data Mining. IWBBIO 2016: 752-764 - [c47]Maxime Déraspe, Kalpana Karra, Gail Binkley, Julie M. Sullivan, Gos Micklem, Jacques Corbeil, J. Michael Cherry, Michel Dumontier:
Semantic Research Platform for Model Organisms. BMDID@ISWC 2016 - [c46]Amrapali Zaveri, Michel Dumontier:
Ontology Mapping for Life Science Linked Data. BMDID@ISWC 2016 - [c45]Maxime Déraspe, Gail Binkley, Daniela Butano, Matthew Chadwick, J. Michael Cherry, Justin Clark-Casey, Sergio Contrino, Jacques Corbeil, Joshua Heimbach, Kalpana Karra, Rachel Lyne, Julie M. Sullivan, Yo Yehudi, Gos Micklem, Michel Dumontier:
Making Linked Data SPARQL with the InterMine Biological Data Warehouse. SWAT4LS 2016 - [i15]Ruben Verborgh, Michel Dumontier:
A Web API ecosystem through feature-based reuse. CoRR abs/1609.07108 (2016) - [i14]David Fajardo-Ortiz, Malaquias Lopez-Cervantes, Luis Duran, Michel Dumontier, Miguel Lara, Hector Ochoa, Víctor M. Castaño:
The structure and dynamics of the research fronts in HIV/AIDS research: part-whole and adaptive specialization. CoRR abs/1611.05204 (2016) - [i13]Tobias Kuhn, Christine Chichester, Michael Krauthammer, Núria Queralt-Rosinach, Ruben Verborgh, George Giannakopoulos, Axel-Cyrille Ngonga Ngomo, Raffaele Viglianti, Michel Dumontier:
Decentralized provenance-aware publishing with nanopublications. PeerJ Prepr. 4: e1760 (2016) - [i12]Jamie P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness:
Finding melanoma drugs through a probabilistic knowledge graph. PeerJ Prepr. 4: e2007 (2016) - [i11]Mark D. Wilkinson, Ruben Verborgh, Luiz Olavo Bonino da Silva Santos, Tim Clark, Morris A. Swertz, Fleur D. L. Kelpin, Alasdair J. G. Gray, Erik A. Schultes, Erik M. van Mulligen, Paolo Ciccarese, Mark Thompson, Rajaram Kaliyaperumal, Jerven T. Bolleman, Michel Dumontier:
Interoperability and FAIRness through a novel combination of Web technologies. PeerJ Prepr. 4: e2522 (2016) - 2015
- [j50]Maulik R. Kamdar, Michel Dumontier:
An Ebola virus-centered knowledge base. Database J. Biol. Databases Curation 2015 (2015) - [j49]Sarala M. Wimalaratne, Jerven T. Bolleman, Nick S. Juty, Toshiaki Katayama, Michel Dumontier, Nicole Redaschi, Nicolas Le Novère, Henning Hermjakob, Camille Laibe:
SPARQL-enabled identifier conversion with Identifiers.org. Bioinform. 31(11): 1875-1877 (2015) - [j48]Larisa N. Soldatova, Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah:
Special issue on bio-ontologies and phenotypes. J. Biomed. Semant. 6: 40 (2015) - [j47]Alison Callahan, Juan Cifuentes, Michel Dumontier:
An evidence-based approach to identify aging-related genes in Caenorhabditis elegans. BMC Bioinform. 16: 40:1-40:18 (2015) - [j46]Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser:
The center for expanded data annotation and retrieval. J. Am. Medical Informatics Assoc. 22(6): 1148-1152 (2015) - [j45]Serkan Ayvaz, John R. Horn, Oktie Hassanzadeh, Qian Zhu, Johann Stan, Nicholas P. Tatonetti, Santiago Vilar, Mathias Brochhausen, Matthias Samwald, Majid Rastegar-Mojarad, Michel Dumontier, Richard D. Boyce:
Toward a complete dataset of drug-drug interaction information from publicly available sources. J. Biomed. Informatics 55: 206-217 (2015) - [j44]Gang Fu, Colin R. Batchelor, Michel Dumontier, Janna Hastings, Egon L. Willighagen, Evan Bolton:
PubChemRDF: towards the semantic annotation of PubChem compound and substance databases. J. Cheminformatics 7: 34:1-34:15 (2015) - [j43]Matthias Samwald, José Antonio Miñarro-Giménez, Richard D. Boyce, Robert R. Freimuth, Klaus-Peter Adlassnig, Michel Dumontier:
Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. BMC Medical Informatics Decis. Mak. 15: 12 (2015) - [j42]Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth E. Duerr, Laurel L. Haak, Melissa A. Haendel, Iván Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark:
Achieving human and machine accessibility of cited data in scholarly publications. PeerJ Comput. Sci. 1: e1 (2015) - [j41]Tobias Kuhn, Michel Dumontier:
Making Digital Artifacts on the Web Verifiable and Reliable. IEEE Trans. Knowl. Data Eng. 27(9): 2390-2400 (2015) - [c44]Tiffany I. Leung, Michel Dumontier:
Drug-Disease Associations in Guidelines, Drug Labels, and Practice. AMIA 2015 - [c43]Carlos Buil-Aranda, Martín Ugarte, Marcelo Arenas, Michel Dumontier:
A Preliminary Investigation into SPARQL Query Complexity and Federation in Bio2RDF. AMW 2015 - [c42]Tiffany I. Leung, Michel Dumontier:
Comparing Drug-Disease Associations in Clinical Practice Guideline Recommendations and Drug Product Label Indications. MedInfo 2015: 1039 - [c41]Juan M. Banda, Tobias Kuhn, Nigam H. Shah, Michel Dumontier:
Provenance-Centered Dataset of Drug-Drug Interactions. ISWC (2) 2015: 293-300 - [c40]Wei Hu, Honglei Qiu, Michel Dumontier:
Link Analysis of Life Science Linked Data. ISWC (2) 2015: 446-462 - [c39]Tobias Kuhn, Christine Chichester, Michael Krauthammer, Michel Dumontier:
Publishing Without Publishers: A Decentralized Approach to Dissemination, Retrieval, and Archiving of Data. ISWC (1) 2015: 656-672 - [c38]Gang Fu, Evan Bolton, Núria Queralt-Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier:
Exposing Provenance Metadata Using Different RDF Models. SWAT4LS 2015: 167-176 - [e6]Michel Dumontier, Birte Glimm, Rafael S. Gonçalves, Matthew Horridge, Ernesto Jiménez-Ruiz, Nicolas Matentzoglu, Bijan Parsia, Giorgos B. Stamou, Giorgos Stoilos:
Informal Proceedings of the 4th International Workshop on OWL Reasoner Evaluation (ORE-2015) co-located with the 28th International Workshop on Description Logics (DL 2015), Athens, Greece, June 6, 2015. CEUR Workshop Proceedings 1387, CEUR-WS.org 2015 [contents] - [e5]Marcelo Arenas, Óscar Corcho, Elena Simperl, Markus Strohmaier, Mathieu d'Aquin, Kavitha Srinivas, Paul Groth, Michel Dumontier, Jeff Heflin, Krishnaprasad Thirunarayan, Steffen Staab:
The Semantic Web - ISWC 2015 - 14th International Semantic Web Conference, Bethlehem, PA, USA, October 11-15, 2015, Proceedings, Part I. Lecture Notes in Computer Science 9366, Springer 2015, ISBN 978-3-319-25006-9 [contents] - [e4]Marcelo Arenas, Óscar Corcho, Elena Simperl, Markus Strohmaier, Mathieu d'Aquin, Kavitha Srinivas, Paul Groth, Michel Dumontier, Jeff Heflin, Krishnaprasad Thirunarayan, Steffen Staab:
The Semantic Web - ISWC 2015 - 14th International Semantic Web Conference, Bethlehem, PA, USA, October 11-15, 2015, Proceedings, Part II. Lecture Notes in Computer Science 9367, Springer 2015, ISBN 978-3-319-25009-0 [contents] - [i10]Tobias Kuhn, Michel Dumontier:
Making Digital Artifacts on the Web Verifiable and Reliable. CoRR abs/1507.01697 (2015) - [i9]Juan M. Banda, Tobias Kuhn, Nigam H. Shah, Michel Dumontier:
Provenance-Centered Dataset of Drug-Drug Interactions. CoRR abs/1507.05408 (2015) - [i8]Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Vinh Nguyen, Amit P. Sheth, Olivier Bodenreider, Michel Dumontier:
Exposing Provenance Metadata Using Different RDF Models. CoRR abs/1509.02822 (2015) - [i7]Vinh Nguyen, Olivier Bodenreider, Krishnaprasad Thirunarayan, Gang Fu, Evan Bolton, Núria Queralt Rosinach, Laura Inés Furlong, Michel Dumontier, Amit P. Sheth:
On Reasoning with RDF Statements about Statements using Singleton Property Triples. CoRR abs/1509.04513 (2015) - [i6]Joan Starr, Eleni Castro, Mercè Crosas, Michel Dumontier, Robert R. Downs, Ruth E. Duerr, Laurel L. Haak, Melissa A. Haendel, Iván Herman, Simon Hodson, Joe Hourclé, John Ernest Kratz, Jennifer Lin, Lars Holm Nielsen, Amy Nurnberger, Stefan Pröll, Andreas Rauber, Simone Sacchi, Arthur P. Smith, Michael Taylor, Tim Clark:
Achieving human and machine accessibility of cited data in scholarly publications. PeerJ Prepr. 3: e697 (2015) - 2014
- [j40]Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier:
Mouse model phenotypes provide information about human drug targets. Bioinform. 30(5): 719-725 (2014) - [j39]Larisa N. Soldatova, Philippe Rocca-Serra, Michel Dumontier, Nigam H. Shah:
Selected papers from the 16th Annual Bio-Ontologies Special Interest Group Meeting. J. Biomed. Semant. 5(S-1): 1 (2014) - [j38]Michel Dumontier, Christopher J. O. Baker, Joachim Baran, Alison Callahan, Leonid L. Chepelev, Jose Cruz-Toledo, Nicholas R. Del Rio, Geraint Duck, Laura Inés Furlong, Nichealla Keath, Dana Klassen, Jamie P. McCusker, Núria Queralt-Rosinach, Matthias Samwald, Natalia Villanueva-Rosales, Mark D. Wilkinson, Robert Hoehndorf:
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery. J. Biomed. Semant. 5: 14 (2014) - [j37]Alejandro Rodríguez González, Alison Callahan, José Cruz-Toledo, Adrian Garcia, Mikel Egaña Aranguren, Michel Dumontier, Mark D. Wilkinson:
Automatically exposing OpenLifeData via SADI semantic Web Services. J. Biomed. Semant. 5: 46 (2014) - [j36]Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Michel Dumontier:
Special issue on Linked Data for Health Care and the Life Sciences. Semantic Web 5(2): 99-100 (2014) - [c37]Tiffany I. Leung, Hawre Jalal, Donna M. Zulman, Douglas K. Owens, Mark A. Musen, Michel Dumontier, Mary K. Goldstein:
Automating Identification of Multiple Chronic Conditions in Clinical Practice Guidelines. AMIA 2014 - [c36]Tobias Kuhn, Michel Dumontier:
Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data. ESWC 2014: 395-410 - [c35]Tobias Kuhn, Michel Dumontier:
Erratum: Trusty URIs: Verifiable, Immutable, and Permanent Digital Artifacts for Linked Data. ESWC 2014 - [c34]Jamie P. McCusker, Rui Yan, Kusum Solanki, John S. Erickson, Cynthia Chang, Michel Dumontier, Jonathan S. Dordick, Deborah L. McGuinness:
A Nanopublication Framework for Biological Networks using Cytoscape.js. ICBO 2014: 90-92 - [c33]Michel Dumontier, Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Vincent Emonet, François Belleau, Arnaud Droit:
Bio2RDF Release 3: A larger, more connected network of Linked Data for the Life Sciences. ISWC (Posters & Demos) 2014: 401-404 - [i5]Tobias Kuhn, Michel Dumontier:
Hash-URIs for Verifiable, Immutable, and Permanent Digital Artifacts. CoRR abs/1401.5775 (2014) - [i4]Tobias Kuhn, Christine Chichester, Michel Dumontier, Michael Krauthammer:
Publishing without Publishers: a Decentralized Approach to Dissemination, Retrieval, and Archiving of Data. CoRR abs/1411.2749 (2014) - 2013
- [j35]Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos:
Evaluation of research in biomedical ontologies. Briefings Bioinform. 14(6): 696-712 (2013) - [j34]Larisa N. Soldatova, Susanna-Assunta Sansone, Michel Dumontier, Nigam H. Shah:
Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting. J. Biomed. Semant. 4(S-1): I1 (2013) - [j33]Alison Callahan, Jose Cruz-Toledo, Michel Dumontier:
Ontology-Based Querying with Bio2RDF's Linked Open Data. J. Biomed. Semant. 4(S-1): S1 (2013) - [j32]Astrid Duque-Ramos, Jesualdo Tomás Fernández-Breis, Miguela Iniesta-Moreno, Michel Dumontier, Mikel Egaña Aranguren, Stefan Schulz, Nathalie Aussenac-Gilles, Robert Stevens:
Evaluation of the OQuaRE framework for ontology quality. Expert Syst. Appl. 40(7): 2696-2703 (2013) - [j31]Tudor Groza, Tania Tudorache, Michel Dumontier:
State of the art and open challenges in community-driven knowledge curation. J. Biomed. Informatics 46(1): 1-4 (2013) - [j30]Alison Callahan, Michel Dumontier, Jodi Schneider, Lars Svensson:
1st Semantic Web Technologies for Libraries and Readers (STLR 2011). Bull. IEEE Tech. Comm. Digit. Libr. 9(1) (2013) - [c32]Laleh Kazemzadeh, Helena F. Deus, Michel Dumontier, Frank Barry:
Looking into Reactome through Biopax Lens. CSWS 2013: 37-40 - [c31]Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Michel Dumontier:
Bio2RDF Release 2: Improved Coverage, Interoperability and Provenance of Life Science Linked Data. ESWC 2013: 200-212 - [c30]Leonid L. Chepelev, Michel Dumontier:
The Web as a Distributed Biochemical Reactor: Semantically Enabled Metabolic Fate Prediction. ICBO 2013: 113-116 - [c29]Alison Callahan, Michel Dumontier:
HyQue: A Semantic Web tool for evaluating scientific hypotheses. ICBO 2013: 123 - [c28]Matthias Samwald, Robert R. Freimuth, Joanne S. Luciano, Simon M. Lin, Robert L. Powers, M. Scott Marshall, Klaus-Peter Adlassnig, Michel Dumontier, Richard D. Boyce:
An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. MedInfo 2013: 539-542 - [c27]Jose Cruz-Toledo, Alison Callahan, Michel Dumontier:
A Large-scale Gene-centric Semantic Web Knowledge Base for Molecular Biology. ORE 2013: 134-139 - [e3]René Witte, Christopher J. O. Baker, Greg Butler, Michel Dumontier:
Proceedings of the 4th Canadian Semantic Web Symposium part of the Semantic Trilogy 2013, Montreal, QC, Canada, July 10th, 2013. CEUR Workshop Proceedings 1054, CEUR-WS.org 2013 [contents] - [e2]Michel Dumontier, Robert Hoehndorf, Christopher J. O. Baker:
Proceedings of the 4th International Conference on Biomedical Ontology, ICBO 2013, Montreal, Canada, July 7-12, 2013. CEUR Workshop Proceedings 1060, CEUR-WS.org 2013 [contents] - [i3]Alison Callahan, Michel Dumontier:
Ovopub: Modular data publication with minimal provenance. CoRR abs/1305.6800 (2013) - 2012
- [j29]Marc-Alexandre Nolin, Michel Dumontier, François Belleau, Jacques Corbeil:
Building an HIV data mashup using Bio2RDF. Briefings Bioinform. 13(1): 98-106 (2012) - [j28]Jose Cruz-Toledo, Maureen McKeague, Xueru Zhang, Amanda Giamberardino, Erin McConnell, Tariq Francis, Maria C. DeRosa, Michel Dumontier:
Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments. Database J. Biol. Databases Curation 2012 (2012) - [j27]Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos:
Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics. Bioinform. 28(16): 2169-2175 (2012) - [j26]Larisa N. Soldatova, Susanna-Assunta Sansone, Michel Dumontier, Nigam H. Shah:
Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting. J. Biomed. Semant. 3(S-1): I1 (2012) - [j25]Leonid L. Chepelev, Janna Hastings, Marcus Ennis, Christoph Steinbeck, Michel Dumontier:
Self-organizing ontology of biochemically relevant small molecules. BMC Bioinform. 13: 3 (2012) - [j24]Michel Dumontier, David J. Wild:
Linked Data in Drug Discovery. IEEE Internet Comput. 16(6): 68-71 (2012) - [c26]Alison Callahan, Michel Dumontier:
Evaluating Scientific Hypotheses Using the SPARQL Inferencing Notation. ESWC 2012: 647-658 - [c25]Christian Boelling, Michel Dumontier, Michael Weidlich, Hermann-Georg Holzhütter:
Role-based representation and inference of biochemical processes. ICBO 2012 - [c24]Michel Dumontier:
Molecular Symmetry and Specialization of Atomic Connectivity by Class-based Reasoning of Chemical Structure. OWLED 2012 - [c23]Alison Callahan, Jose Cruz-Toledo, Peter Ansell, Dana Klassen, Giovanni Tumarello, Michel Dumontier:
Improved Dataset Coverage and Interoperability with Bio2RDF Release 2. SWAT4LS 2012 - [c22]Andrea Splendiani, Johan Nyström-Persson, Michel Dumontier, Yasunori Yamamoto:
YummyData: Measuring the "Sparkliness" of Biomedical Sparql Endpoints. SWAT4LS 2012 - [i2]Robert Hoehndorf, Michel Dumontier, Georgios V. Gkoutos:
Towards quantitative measures in applied ontology. CoRR abs/1202.3602 (2012) - 2011
- [j23]Robert Hoehndorf, Colin R. Batchelor, Thomas Bittner, Michel Dumontier, Karen Eilbeck, Rob Knight, Chris Mungall, Jane S. Richardson, Jesse Stombaugh, Eric Westhof, Craig L. Zirbel, Neocles Leontis:
The RNA Ontology (RNAO): An ontology for integrating RNA sequence and structure data. Appl. Ontology 6(1): 53-89 (2011) - [j22]Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos:
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27(7): 1001-1008 (2011) - [j21]Joanne S. Luciano, Bosse Andersson, Colin R. Batchelor, Olivier Bodenreider, Tim Clark, Christine K. Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, Jamie P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier:
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside. J. Biomed. Semant. 2(S-2): S1 (2011) - [j20]Adrien Coulet, Yael Garten, Michel Dumontier, Russ B. Altman, Mark A. Musen, Nigam H. Shah:
Integration and publication of heterogeneous text-mined relationships on the Semantic Web. J. Biomed. Semant. 2(S-2): S10 (2011) - [j19]Alison Callahan, Michel Dumontier, Nigam H. Shah:
HyQue: evaluating hypotheses using Semantic Web technologies. J. Biomed. Semant. 2(S-2): S3 (2011) - [j18]Leonid L. Chepelev, Alexandre Riazanov, Alexandre Kouznetsov, Hong Sang Low, Michel Dumontier, Christopher J. O. Baker:
Prototype Semantic Infrastructure for Automated Small Molecule Classification and Annotation in Lipidomics. BMC Bioinform. 12: 303 (2011) - [j17]Robert Hoehndorf, Michel Dumontier, John H. Gennari, Sarala M. Wimalaratne, Bernard de Bono, Daniel L. Cook, Georgios V. Gkoutos:
Integrating systems biology models and biomedical ontologies. BMC Syst. Biol. 5: 124 (2011) - [j16]Alexander Gawronski, Michel Dumontier:
MoSuMo: A Semantic Web service to generate electrostatic potentials across solvent excluded protein surfaces and binding pockets. Comput. Graph. 35(4): 823-830 (2011) - [j15]Leonid L. Chepelev, Michel Dumontier:
Semantic Web integration of Cheminformatics resources with the SADI framework. J. Cheminformatics 3: 16 (2011) - [j14]Leonid L. Chepelev, Michel Dumontier:
Chemical Entity Semantic Specification: Knowledge representation for efficient semantic cheminformatics and facile data integration. J. Cheminformatics 3: 20 (2011) - [j13]Michel Dumontier:
Taking flight with OWL2. Semantic Web 2(2): 67-70 (2011) - [c21]Benjamin P. Vandervalk, Michel Dumontier, E. Luke McCarthy, Mark D. Wilkinson:
SADI for GMOD: Semantic Web Services for Model Organism Databases. CSWS 2011: 70-75 - [c20]Matthias Samwald, Holger Stenzhorn, Michel Dumontier, M. Scott Marshall, Joanne Luciano, Klaus-Peter Adlassnig:
Towards an Interoperable Information Infrastructure Providing Decision Support for Genomic Medicine. MIE 2011: 165-169 - [c19]Leonid L. Chepelev, Dana Klassen, Michel Dumontier:
Chemical Hazard Estimation and Method Comparison with OWL-Encoded Toxicity Decision Trees. OWLED 2011 - [e1]Michel Dumontier, Mélanie Courtot:
Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), San Francisco, California, USA, June 5-6, 2011. CEUR Workshop Proceedings 796, CEUR-WS.org 2011 [contents] - [i1]Matthias Samwald, Holger Stenzhorn, Michel Dumontier, M. Scott Marshall, Joanne Luciano, Klaus-Peter Adlassnig:
Towards an interoperable information infrastructure providing decision support for genomic medicine. CoRR abs/1109.6626 (2011) - 2010
- [j12]Jose Cruz-Toledo, Michel Dumontier, Marc Parisien, François Major:
RKB: a Semantic Web knowledge base for RNA. J. Biomed. Semant. 1(S-1): S2 (2010) - [j11]Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Janet Kelso, Dietrich Rebholz-Schuhmann, Heinrich Herre:
Relations as patterns: bridging the gap between OBO and OWL. BMC Bioinform. 11: 441 (2010) - [j10]Michel Dumontier:
Building an effective Semantic Web for health care and the life sciences. Semantic Web 1(1-2): 131-135 (2010) - [j9]Michel Dumontier, Leo Ferres, Natalia Villanueva-Rosales:
Modeling and querying graphical representations of statistical data. J. Web Semant. 8(2-3): 241-254 (2010) - [c18]Michel Dumontier, Robert Hoehndorf:
Realism for scientific ontologies. FOIS 2010: 387-399 - [c17]Janna Hastings, Michel Dumontier, Duncan Hull, Matthew Horridge, Christoph Steinbeck, Robert Stevens, Ulrike Sattler, Tertia Hörne, Katarina Britz:
Representing Chemicals Using OWL, Description Graphs and Rules. OWLED 2010 - [c16]Robert Hoehndorf, Anika Oellrich, Michel Dumontier, Heinrich Herre, Dietrich Rebholz-Schuhmann:
Relational Patterns in OWL and Their Application to OBO. OWLED 2010
2000 – 2009
- 2009
- [j8]Michel Dumontier, Natalia Villanueva-Rosales:
Towards pharmacogenomics knowledge discovery with the semantic web. Briefings Bioinform. 10(2): 153-163 (2009) - [c15]James R. Green, Hanan Mahmoud, Michel Dumontier:
Modeling tryptic digestion on the Cell BE processor. CCECE 2009: 701-705 - [c14]Jose Cruz-Toledo, Alexander De Leon Battista, Michel Dumontier:
PDB2RDF - Exposing Molecular and Experimental Knowledge on the Semantic Web. I-SEMANTICS 2009 - [c13]Alexander De Leon Battista, Michel Dumontier:
A Platform for Reasoning with OWL-EL Knowledge Bases in a Peer-to-Peer Environment. OWLED 2009 - [c12]Xueying Chen, Michel Dumontier:
Conjunctive Query Answering in Distributed Ontology Systems for Ontologies with Large OWL ABoxes. OWLED 2009 - 2008
- [j7]Laurier Boulianne, Sevin Al Assaad, Michel Dumontier, Warren J. Gross:
GridCell: a stochastic particle-based biological system simulator. BMC Syst. Biol. 2: 66 (2008) - [j6]Natalia Villanueva-Rosales, Michel Dumontier:
yOWL: An ontology-driven knowledge base for yeast biologists. J. Biomed. Informatics 41(5): 779-789 (2008) - [c11]Mykola Konyk, Alexander De Leon Battista, Michel Dumontier:
Chemical Knowledge for the Semantic Web. DILS 2008: 169-176 - [c10]Michel Dumontier, Leo Ferres, Natalia Villanueva-Rosales:
Semantic Annotation and Question Answering of Statistical Graphs. MICAI 2008: 100-110 - [c9]Alex DeLeon, Michel Dumontier:
Publishing OWL Ontologies with Presto. OWLED (Spring) 2008 - [c8]Michel Dumontier:
Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions. OWLED 2008 - [c7]Michel Dumontier, Natalia Villanueva-Rosales:
Modeling Life Science Knowledge with OWL 1.1. OWLED (Spring) 2008 - [c6]Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang:
Report on semantic web for health care and life sciences workshop. WWW 2008: 1273-1274 - 2007
- [c5]Leo Ferres, Michel Dumontier, Natalia Villanueva-Rosales:
Semantic Query Answering with Time-Series Graphs. EDOCW 2007: 117-124 - [c4]Michel Dumontier, Natalia Villanueva-Rosales:
Three-Layer OWL Ontology Design. WoMO 2007 - [c3]Natalia Villanueva-Rosales, Michel Dumontier:
Describing Chemical Functional Groups in OWL-DL for the Classification of Chemical Compounds. OWLED 2007 - [c2]Laurier Boulianne, Michel Dumontier, Warren J. Gross:
A stochastic particle-based biological system simulator. SCSC 2007: 794-801 - [c1]Alexander De Leon Battista, Natalia Villanueva-Rosales, Myroslav Palenychka, Michel Dumontier:
SMART: A Web-Based, Ontology-Driven, Semantic Web Query Answering Application. Semantic Web Challenge 2007 - 2006
- [j5]Kevin A. Snyder, Howard J. Feldman, Michel Dumontier, John J. Salama, Christopher W. V. Hogue:
Domain-based small molecule binding site annotation. BMC Bioinform. 7: 152 (2006) - 2005
- [j4]C. Alfarano, C. E. Andrade, K. Anthony, N. Bahroos, Martha Bajec, K. Bantoft, Doron Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, Ian M. Donaldson, D. Dorairajoo, Michel Justin Dumontier, M. R. Dumontier, V. Earles, R. Farrall, Howard J. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, Robin Haw, A. Hrvojic, L. Hurrell, Ruth Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, Benjamin D. Parker, Greg Pintilie, R. Pirone, John J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, Kevin A. Snyder, R. Stasiuk, D. Strumpf, Brigitte Tuekam, S. Tao, Z. Wang, M. White, R. Willis, Cheryl Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, Shudong Zhang, K. Zheng, Tony Pawson, B. F. Francis Ouellette, Christopher W. V. Hogue:
The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Res. 33(Database-Issue): 418-424 (2005) - 2002
- [j3]Michel Dumontier, Christopher W. V. Hogue:
NBLAST: a cluster variant of BLAST for NxN comparisons. BMC Bioinform. 3: 13 (2002) - [j2]Katerina Michalickova, Gary D. Bader, Michel Dumontier, Hao Lieu, Doron Betel, Ruth Isserlin, Christopher W. V. Hogue:
SeqHound: biological sequence and structure database as a platform for bioinformatics research. BMC Bioinform. 3: 32 (2002) - [j1]Michel Dumontier, Katerina Michalickova, Christopher W. V. Hogue:
Species-specific protein sequence and fold optimizations. BMC Bioinform. 3: 39 (2002)
Coauthor Index
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