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2020 – today
- 2024
[j44]Ziji Zhang, Georgios Kementzidis, Peng Zhang, Leili Zhang, James R. Kozloski, Adam Hansen, Miriam Rafailovich, Marcia Simon, Yuefan Deng:
Learning coarse-grained force fields for fibrogenesis modeling. Comput. Phys. Commun. 295: 108964 (2024)- [j43]Hong Wang
, Yuefan Deng, Shinjae Yoo, Yuewei Lin:
Exploring Robust Features for Improving Adversarial Robustness. IEEE Trans. Cybern. 54(9): 5141-5151 (2024) - 2023
- [j42]David Liang, Ziji Zhang, Miriam Rafailovich, Marcia Simon, Yuefan Deng, Peng Zhang:
Coarse-Grained Modeling of the SARS-CoV-2 Spike Glycoprotein by Physics-Informed Machine Learning. Comput. 11(2): 24 (2023) - [j41]Yicong Zhu, Changnian Han, Peng Zhang, Guojing Cong, James R. Kozloski, Chih-Chieh Yang, Leili Zhang, Yuefan Deng:
AI-aided multiscale modeling of physiologically-significant blood clots. Comput. Phys. Commun. 287: 108718 (2023) - [i9]Hong Wang, Yuefan Deng, Shinjae Yoo, Yuewei Lin:
Exploring Robust Features for Improving Adversarial Robustness. CoRR abs/2309.04650 (2023) - 2022
- [j40]Xiaolong Huang, Alexandre F. Ramos, Yuefan Deng:
Optimal circulant graphs as low-latency network topologies. J. Supercomput. 78(11): 13491-13510 (2022) - [j39]Changnian Han, Peng Zhang, Yicong Zhu, Guojing Cong, James R. Kozloski, Chih-Chieh Yang, Leili Zhang, Yuefan Deng:
Scalable multiscale modeling of platelets with 100 million particles. J. Supercomput. 78(18): 19707-19724 (2022) - [i8]Xiaolong Huang, Alexandre F. Ramos, Yuefan Deng:
Optimal circulant graphs as low-latency network topologies. CoRR abs/2201.01342 (2022) - [i7]Yicong Zhu, Changnian Han, Peng Zhang, Guojing Cong, James R. Kozloski, Chih-Chieh Yang, Leili Zhang, Yuefan Deng:
AI-aided multiscale modeling of physiologically-significant blood clots. CoRR abs/2205.14121 (2022) - 2021
- [j38]Ziji Zhang, Peng Zhang, Peineng Wang, Jawaad Sheriff, Danny Bluestein, Yuefan Deng:
Rapid analysis of streaming platelet images by semi-unsupervised learning. Comput. Medical Imaging Graph. 89: 101895 (2021) - [j37]Changnian Han, Peng Zhang, Danny Bluestein, Guojing Cong, Yuefan Deng:
Artificial intelligence for accelerating time integrations in multiscale modeling. J. Comput. Phys. 427: 110053 (2021) - [c11]Hong Wang, Yuefan Deng, Shinjae Yoo, Haibin Ling, Yuewei Lin:
AGKD-BML: Defense Against Adversarial Attack by Attention Guided Knowledge Distillation and Bi-directional Metric Learning. ICCV 2021: 7638-7647 - [c10]Yicong Zhu, Peng Zhang, Changnian Han, Guojing Cong, Yuefan Deng:
Enabling AI-Accelerated Multiscale Modeling of Thrombogenesis at Millisecond and Molecular Resolutions on Supercomputers. ISC 2021: 237-254 - [i6]Hong Wang, Yuefan Deng, Shinjae Yoo, Haibin Ling, Yuewei Lin:
AGKD-BML: Defense Against Adversarial Attack by Attention Guided Knowledge Distillation and Bi-directional Metric Learning. CoRR abs/2108.06017 (2021) - 2020
- [j36]Yidan Zhang, Xiaolong Huang, Zhipeng Xu, Yuefan Deng:
A Structured Table of Graphs with Symmetries and Other Special Properties. Symmetry 12(1): 2 (2020) - [j35]Yuefan Deng, Meng Guo, Alexandre F. Ramos, Xiaolong Huang, Zhipeng Xu, Weifeng Liu:
Optimal low-latency network topologies for cluster performance enhancement. J. Supercomput. 76(12): 9558-9584 (2020) - [j34]Keli Xiao, Zeyang Ye, Lihao Zhang, Wenjun Zhou, Yong Ge, Yuefan Deng:
Multi-User Mobile Sequential Recommendation for Route Optimization. ACM Trans. Knowl. Discov. Data 14(5): 52:1-52:28 (2020)
2010 – 2019
- 2019
- [j33]Lihao Zhang, Zeyang Ye, Yuefan Deng:
Parallel MCMC methods for global optimization. Monte Carlo Methods Appl. 25(3): 227-237 (2019) - [j32]Zeyang Ye, Keli Xiao, Yong Ge, Yuefan Deng:
Applying Simulated Annealing and Parallel Computing to the Mobile Sequential Recommendation. IEEE Trans. Knowl. Data Eng. 31(2): 243-256 (2019) - [i5]Yuefan Deng, Meng Guo, Alexandre F. Ramos, Xiaolong Huang, Zhipeng Xu, Weifeng Liu:
Optimal Low-Latency Network Topologies for Cluster Performance Enhancement. CoRR abs/1904.00513 (2019) - [i4]Zhipeng Xu, Xiaolong Huang, Yuefan Deng:
Enumeration of regular graphs by using the cluster in high efficiency. CoRR abs/1907.12455 (2019) - [i3]Zhipeng Xu, Xiaolong Huang, Yuefan Deng:
Optimal Routing for a Family of Scalable Interconnection Networks. CoRR abs/1909.06497 (2019) - [i2]Yidan Zhang, Xiaolong Huang, Zhipeng Xu, Yuefan Deng:
A Structured Table of Graphs with Special Properties. CoRR abs/1910.13539 (2019) - 2018
- [c9]Zeyang Ye, Keli Xiao, Yuefan Deng:
A Unified Theory of the Mobile Sequential Recommendation Problem. ICDM 2018: 1380-1385 - [c8]Zeyang Ye, Lihao Zhang, Keli Xiao, Wenjun Zhou, Yong Ge, Yuefan Deng:
Multi-User Mobile Sequential Recommendation: An Efficient Parallel Computing Paradigm. KDD 2018: 2624-2633 - 2017
- [j31]Chao Gao, Peng Zhang, Gil Marom, Yuefan Deng, Danny Bluestein:
Reducing the effects of compressibility in DPD-based blood flow simulations through severe stenotic microchannels. J. Comput. Phys. 335: 812-827 (2017) - [i1]Alexandre F. Ramos, Yuefan Deng:
Symmetry-guided design of topologies for supercomputer networks. CoRR abs/1706.09506 (2017) - 2016
- [j30]Peng Zhang, Na Zhang, Chao Gao, Li Zhang, Yu-Xiang Gao, Yuefan Deng, Danny Bluestein:
Scalability Test of multiscale fluid-platelet model for three top supercomputers. Comput. Phys. Commun. 204: 132-140 (2016) - 2015
- [j29]Peng Zhang, Na Zhang, Yuefan Deng, Danny Bluestein:
A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma. J. Comput. Phys. 284: 668-686 (2015) - [j28]Peng Zhang, Ling Liu, Yuefan Deng:
A data-driven paradigm for mapping problems. Parallel Comput. 48: 108-124 (2015) - [j27]Marek T. Michalewicz, Yuefan Deng:
Foreword. Supercomput. Front. Innov. 2(3): 4 (2015) - [j26]Marek T. Michalewicz, Lukasz Orlowski, Yuefan Deng:
Creating interconnect topologies by algorithmic edge removal: MOD and SMOD graphs. Supercomput. Front. Innov. 2(4): 16-47 (2015) - [j25]Peng Zhang, Yuefan Deng, Rui Feng, Xingguo Luo, Jiangxing Wu:
Evaluation of Various Networks Configurated by Adding Bypass or Torus Links. IEEE Trans. Parallel Distributed Syst. 26(4): 984-996 (2015) - [c7]Li Zhang, Keli Xiao, Qi Liu, Yefan Tao, Yuefan Deng:
Modeling Social Attention for Stock Analysis: An Influence Propagation Perspective. ICDM 2015: 609-618 - [c6]Zeyang Ye, Keli Xiao, Yuefan Deng:
Investigation of Simulated Annealing Cooling Schedule for Mobile Recommendations. ICDM Workshops 2015: 1078-1084 - [c5]Na Zhang, Peng Zhang, Li Zhang, Xiao Zhu, Lei Huang, Yuefan Deng:
Performance examinations of multiple time-stepping algorithms on stampede supercomputer. XSEDE 2015: 8:1-8:7 - 2014
- [j24]Na Zhang, Peng Zhang, Wei Kang, Danny Bluestein, Yuefan Deng:
Parameterizing the Morse potential for coarse-grained modeling of blood plasma. J. Comput. Phys. 257: 726-736 (2014) - [j23]Peng Zhang, Yu-Xiang Gao, Janet Fierson, Yuefan Deng:
Eigenanalysis-based task mapping on parallel computers with cellular networks. Math. Comput. 83(288): 1727-1756 (2014) - [j22]Art Sedighi, Yuefan Deng, Peng Zhang:
Fariness of task scheduling in high performance computing environments. Scalable Comput. Pract. Exp. 15(3) (2014) - 2013
- [j21]Yuefan Deng, Peng Zhang, Carlos Marques, Reid Powell, Li Zhang:
Analysis of Linpack and power efficiencies of the world's TOP500 supercomputers. Parallel Comput. 39(6-7): 271-279 (2013) - [c4]Rui Feng, Peng Zhang, Yuefan Deng:
Deadlock-Free Routing Algorithms for 6D Mesh/iBT Interconnection Networks. SNPD 2013: 275-282 - 2012
- [j20]Peng Zhang, Yuefan Deng:
An analysis of the topological properties of the interlaced bypass torus (iBT) networks. Appl. Math. Lett. 25(12): 2147-2155 (2012) - [j19]Peng Zhang, Yuefan Deng:
Design and Analysis of Pipelined Broadcast Algorithms for the All-Port Interlaced Bypass Torus Networks. IEEE Trans. Parallel Distributed Syst. 23(12): 2245-2253 (2012) - [c3]Rui Feng, Peng Zhang, Yuefan Deng:
Simulated Performance Evaluation of a 6D Mesh/iBT Interconnect. SNPD 2012: 253-259 - 2011
- [j18]Peng Zhang, Reid Powell, Yuefan Deng:
Interlacing Bypass Rings to Torus Networks for More Efficient Networks. IEEE Trans. Parallel Distributed Syst. 22(2): 287-295 (2011)
2000 – 2009
- 2009
- [j17]Yongzhi Chen, Yuefan Deng:
A detailed analysis of communication load balance on BlueGene supercomputer. Comput. Phys. Commun. 180(8): 1251-1258 (2009) - 2008
- [j16]Yongzhi Chen, Yuefan Deng:
Task mapping on supercomputers with cellular networks. Comput. Phys. Commun. 179(7): 479-485 (2008) - [c2]Riwei Wang, Hua Zhang, Yuefan Deng, Lei Ming:
Efficient Parallel Radiosity for Terascale Applications. CSSE (2) 2008: 1074-1077 - 2007
- [j15]Guowen Han, Yuefan Deng, James Glimm, Glenn J. Martyna:
Error and timing analysis of multiple time-step integration methods for molecular dynamics. Comput. Phys. Commun. 176(4): 271-291 (2007) - [j14]Bin Fang, Yuefan Deng, Glenn J. Martyna:
Performance of the 3D FFT on the 6D network torus QCDOC parallel supercomputer. Comput. Phys. Commun. 176(8): 531-538 (2007) - [j13]Yongzhi Chen, Xin Chen, Yuefan Deng:
Simulating botulinum neurotoxin with constant pH molecular dynamics in Generalized Born implicit solvent. Comput. Phys. Commun. 177(1-2): 210-213 (2007) - [j12]Bin Fang, Glenn J. Martyna, Yuefan Deng:
A fine grained parallel smooth particle mesh Ewald algorithm for biophysical simulation studies: Application to the 6-D torus QCDOC supercomputer. Comput. Phys. Commun. 177(4): 362-377 (2007) - [j11]Kwang Jin Oh, Yuefan Deng:
An efficient parallel implementation of the smooth particle mesh Ewald method for molecular dynamics simulations. Comput. Phys. Commun. 177(5): 426-431 (2007) - [j10]Peter Rissland, Yuefan Deng:
Electrostatic force computation for bio-molecules on supercomputers with torus networks. Parallel Comput. 33(2): 116-123 (2007) - 2004
- [j9]Yuefan Deng, James Glimm, James W. Davenport, X. Cai, E. Santos:
Performance Models on QCDOC for Molecular Dynamics with Coulomb Potentials. Int. J. High Perform. Comput. Appl. 18(2): 183-195 (2004) - 2001
- [j8]Osman Yasar, Yuefan Deng, Robert E. Tuzun, D. Saltz:
New trends in high performance computing. Parallel Comput. 27(1-2): 1-2 (2001) - [j7]Yuefan Deng, Alex Korobka:
The performance of a supercomputer built with commodity components. Parallel Comput. 27(1-2): 91-108 (2001) - 2000
- [j6]Yuefan Deng, Carlos Rivera:
Approximate energy minimization for large Lennard-Jones clusters. J. Glob. Optim. 16(4): 325-341 (2000)
1990 – 1999
- 1999
- [j5]R. Alan McCoy, Yuefan Deng:
Parallel Particle Simulations of Thin-Film Deposition. Int. J. High Perform. Comput. Appl. 13(1): 16-32 (1999) - 1998
- [j4]Chung-Chiang Chou, Yuefan Deng:
Numerical Solutions of a Nonlinear Evolution System with Small Dissipation on Parallel Processors. J. Sci. Comput. 13(4): 405-417 (1998) - [j3]Mo Mu, Yuefan Deng, Chung-Chiang Chou:
Numerical Methods for Simulating Ginzburg-Landau Vortices. SIAM J. Sci. Comput. 19(4): 1333-1339 (1998) - 1997
- [j2]Chung-Chiang Chou, Yuefan Deng:
Decomposing 40 billion integers by four tetrahedral numbers. Math. Comput. 66(218): 893-901 (1997) - 1996
- [j1]Graham Campbell, Yuefan Deng, James Glimm, Yuan Wang, Qiqing Yu, Moisés Eisenberg, Arthur Grollman:
Analysis and prediction of hydrogen bonding in protein-DNA complexes using parallel processors. J. Comput. Chem. 17(15): 1712-1725 (1996) - 1995
- [c1]Yuefan Deng, R. Alan McCoy, Robert B. Marr, Ronald F. Peierls:
An Unconventional Method for Load Balancing. PP 1995: 605-610
Coauthor Index
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