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2020 – today
- 2024
[j13]Xiang Liu
, Nancy Gillis, Chang Jiang, Anthony McCofie, Timothy I. Shaw, Aik Choon Tan, Bo Zhao, Lixin Wan, Derek R. Duckett, Mingxiang Teng:
An Epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level. PLoS Comput. Biol. 20(2) (2024)- 2023
- [j12]Alyssa N. Obermayer, Darwin Chang, Gabrielle Nobles, Mingxiang Teng, Aik Choon Tan, Xuefeng Wang, Y. Ann Chen, Steven Eschrich, Paulo C. Rodriguez, G. Daniel Grass, Soheil Meshinchi, Ahmad Tarhini, Dung-tsa Chen, Timothy I. Shaw:
PATH-SURVEYOR: pathway level survival enquiry for immuno-oncology and drug repurposing. BMC Bioinform. 24(1): 266 (2023) - 2021
- [j11]Mengyu Xie, Kyubum Lee, John H. Lockhart, Scott D. Cukras, Rodrigo Carvajal, Amer A. Beg, Elsa R. Flores, Mingxiang Teng, Christine H. Chung, Aik Choon Tan:
TIMEx: tumor-immune microenvironment deconvolution web-portal for bulk transcriptomics using pan-cancer scRNA-seq signatures. Bioinform. 37(20): 3681-3683 (2021)
2010 – 2019
- 2019
- [j10]Yan-Shuo Chu, Mingxiang Teng, Yadong Wang:
Simulating genetically heterozygous genomes in the tumour tissue according to its clonal evolution history. Int. J. Comput. Biol. Drug Des. 12(2): 143-152 (2019) - 2018
- [j9]Yan-Shuo Chu, Mingxiang Teng, Yadong Wang:
Modeling and correct the GC bias of tumor and normal WGS data for SCNA based tumor subclonal population inferring. BMC Bioinform. 19-S(5): 79-87 (2018) - 2017
- [j8]Yan-Shuo Chu, Zhenxing Wang, Rongjie Wang, Ningyi Zhang, Jie Li, Yang Hu, Mingxiang Teng, Yadong Wang:
WDNfinder: A method for minimum driver node set detection and analysis in directed and weighted biological network. J. Bioinform. Comput. Biol. 15(5): 1750021:1-1750021:18 (2017) - [c5]Yan-Shuo Chu, Mingxiang Teng, Zhenxing Wang, Yongtian Wang, Yadong Wang:
Pre-SCNAClonal: Efficient GC bias correction for SCNA based tumor subclonal populations inferring. BIBM 2017: 262-265 - [c4]Yan-Shuo Chu, Ling Wang, Rongjie Wang, Mingxiang Teng, Yadong Wang:
Pysubsim-tree: A package for simulating tumor genomes according to tumor evolution history. BIBM 2017: 2195-2197 - 2016
- [j7]Bo Liu, Dengfeng Guan, Mingxiang Teng, Yadong Wang:
rHAT: fast alignment of noisy long reads with regional hashing. Bioinform. 32(11): 1625-1631 (2016) - [c3]Rongjie Wang, Mingxiang Teng, Yang Bai, Tianyi Zang, Yadong Wang:
DMcompress: Dynamic Markov models for bacterial genome compression. BIBM 2016: 776-779 - 2015
- [j6]Liran Juan, Yongzhuang Liu, Yongtian Wang, Mingxiang Teng, Tianyi Zang, Yadong Wang:
Family genome browser: visualizing genomes with pedigree information. Bioinform. 31(14): 2262-2268 (2015) - 2014
- [j5]Liran Juan, Mingxiang Teng, Tianyi Zang, Yafeng Hao, Zhenxing Wang, Chengwu Yan, Yongzhuang Liu, Jie Li, Tianjiao Zhang, Yadong Wang:
The personal genome browser: visualizing functions of genetic variants. Nucleic Acids Res. 42(Webserver-Issue): 192-197 (2014) - 2012
- [j4]Mingxiang Teng, Shoji Ichikawa, Leah R. Padgett, Yadong Wang, Matthew E. Mort, David N. Cooper, Daniel L. Koller, Tatiana Foroud, Howard J. Edenberg, Michael J. Econs, Yunlong Liu:
regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions. Bioinform. 28(14): 1879-1886 (2012) - 2011
- [j3]Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li:
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer. BMC Syst. Biol. 5: 67 (2011) - [c2]Mingxiang Teng, Yadong Wang, Yunlong Liu, Seongho Kim, Curtis Balch, Kenneth P. Nephew, Lang Li:
Empirical bayes model comparisons for differential methylation analysis. GENSiPS 2011: 9-12 - 2010
- [j2]Qinghua Jiang, Yangyang Hao, Guohua Wang, Liran Juan, Tianjiao Zhang, Mingxiang Teng, Yunlong Liu, Yadong Wang:
Prioritization of disease microRNAs through a human phenome-microRNAome network. BMC Syst. Biol. 4(S-1): S2 (2010)
2000 – 2009
- 2009
- [j1]Qinghua Jiang, Yadong Wang, Yangyang Hao, Liran Juan, Mingxiang Teng, Xinjun Zhang, Meimei Li, Guohua Wang, Yunlong Liu:
miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res. 37(Database-Issue): 98-104 (2009) - [c1]Terry Camerlengo, Hatice Gulcin Ozer, Pearlly Yan, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang, Mingxiang Teng, Lang Li, Yunlong Liu, Francisco Perez, Tahsin M. Kurç:
Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. BIBM 2009: 392-395
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