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2020 – today
- 2024
[j17]Shumin Li
, Jiajun Ma, Tianyi Zhao, Yuran Jia, Bo Liu, Ruibang Luo, Yuanhua Huang:
CellContrast: Reconstructing spatial relationships in single-cell RNA sequencing data via deep contrastive learning. Patterns 5(8): 101022 (2024)- 2023
- [j16]Huijing Yu, Zhenxian Zheng, Junhao Su, Tak Wah Lam, Ruibang Luo:
Boosting variant-calling performance with multi-platform sequencing data using Clair3-MP. BMC Bioinform. 24(1): 308 (2023) - [c11]Lei Chen, Junhao Su, Tak Wah Lam, Ruibang Luo:
Exploring Pair-Aware Triangular Attention for Biomedical Relation Extraction. BCB 2023: 35:1-35:5 - [c10]Lei Chen, Junhao Su, Zhenxian Zheng, Tak Wah Lam, Ruibang Luo:
Large-scale Dataset and Effective Model for Variant-Disease Associations Extraction. BCB 2023: 37:1-37:6 - 2022
- [j15]Junhao Su, Zhenxian Zheng, Syed Shakeel Ahmed, Tak Wah Lam, Ruibang Luo:
Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks. Briefings Bioinform. 23(5) (2022) - [j14]Yekai Zhou, Amy Wing-Sze Leung, Syed Shakeel Ahmed, Tak Wah Lam, Ruibang Luo:
Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing. BMC Bioinform. 23(1): 465 (2022) - [j13]Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu:
Generalized radiograph representation learning via cross-supervision between images and free-text radiology reports. Nat. Mach. Intell. 4(1): 32-40 (2022) - [j12]Zhenxian Zheng, Shumin Li, Junhao Su, Amy Wing-Sze Leung, Tak Wah Lam, Ruibang Luo:
Symphonizing pileup and full-alignment for deep learning-based long-read variant calling. Nat. Comput. Sci. 2(12): 797-803 (2022) - 2021
- [c9]Ye Wu, Hing-Fung Ting, Tak Wah Lam, Ruibang Luo:
BioNumQA-BERT: answering biomedical questions using numerical facts with a deep language representation model. BCB 2021: 57:1-57:6 - [i3]Hong-Yu Zhou, Xiaoyu Chen, Yinghao Zhang, Ruibang Luo, Liansheng Wang, Yizhou Yu:
Generalized Radiograph Representation Learning via Cross-supervision between Images and Free-text Radiology Reports. CoRR abs/2111.03452 (2021) - 2020
- [j11]Ruibang Luo, Tak Wah Lam, Michael C. Schatz:
Skyhawk: an artificial neural network-based discriminator for reviewing clinically significant genomic variants. Int. J. Comput. Biol. Drug Des. 13(5/6): 431-437 (2020) - [j10]Ruibang Luo, Chak-Lim Wong, Yat-Sing Wong, Chi Ian Tang, Chi-Man Liu, Chi-Ming Leung, Tak Wah Lam:
Exploring the limit of using a deep neural network on pileup data for germline variant calling. Nat. Mach. Intell. 2(4): 220-227 (2020) - [c8]Ye Wu, Ruibang Luo, Tak Wah Lam, Hing-Fung Ting, Junwen Wang:
Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads. BCB 2020: 15:1-15:7 - [c7]Wui Wang Lui, Amy Wing-Sze Leung, Henry C. M. Leung, Yan Xin, Jade L. L. Teng, Patrick C. Y. Woo, Tak Wah Lam, Ruibang Luo:
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics. BIBM 2020: 329-336 - [c6]Xu Cao, Fangzhou Lan, Chi-Man Liu, Tak Wah Lam, Ruibang Luo:
ChromSeg: Two-Stage Framework for Overlapping Chromosome Segmentation and Reconstruction. BIBM 2020: 2335-2342 - [c5]Boxuan Li, Reynold Cheng, Jiafeng Hu, Yixiang Fang, Min Ou, Ruibang Luo, Kevin Chen-Chuan Chang, Xuemin Lin:
MC-Explorer: Analyzing and Visualizing Motif-Cliques on Large Networks. ICDE 2020: 1722-1725
2010 – 2019
- 2019
- [c4]Ye Wu, Ruibang Luo, Henry C. M. Leung, Hing-Fung Ting, Tak Wah Lam:
RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature. RECOMB 2019: 272-284 - 2018
- [j9]Huijun Mai, Yifan Zhang, Dinghua Li, Henry Chi-Ming Leung, Ruibang Luo, Chi-Kwong Wong, Hing-Fung Ting, Tak Wah Lam:
AC-DIAMOND v1: accelerating large-scale DNA-protein alignment. Bioinform. 34(21): 3744-3746 (2018) - [c3]Dinghua Li, Henry Chi-Ming Leung, Chi-Kwong Wong, Yifan Zhang, Wai-Chun Law, Yan Xin, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam:
MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract). ICCABS 2018: 1 - 2017
- [j8]Dinghua Li, Yukun Huang, Henry C. M. Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam:
MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs. BMC Bioinform. 18(S-12): 67-75 (2017) - 2016
- [c2]Huijun Mai, Dinghua Li, Yifan Zhang, Henry Chi-Ming Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam:
AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing. IWBBIO 2016: 426-433 - 2015
- [j7]Dinghua Li, Chi-Man Liu, Ruibang Luo, Kunihiko Sadakane, Tak Wah Lam:
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinform. 31(10): 1674-1676 (2015) - [j6]Min Ou, Ricky Ma, Jeanno Cheung, Katie Lo, Patrick Yee, Tewei Luo, T. L. Chan, Chun Hang Au, Ava Kwong, Ruibang Luo, Tak Wah Lam:
database.bio: a web application for interpreting human variations. Bioinform. 31(24): 4035-4037 (2015) - [j5]Ruibang Luo, Jeanno Cheung, Edward Wu, Heng Wang, Sze-Hang Chan, Wai-Chun Law, Guangzhu He, Chang Yu, Chi-Man Liu, Dazong Zhou, Yingrui Li, Ruiqiang Li, Jun Wang, Xiaoqian Zhu, Shaoliang Peng, Tak Wah Lam:
MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC). BMC Bioinform. 16(S-7): S10 (2015) - 2014
- [j4]Yinlong Xie, Gengxiong Wu, Jingbo Tang, Ruibang Luo, Jordan Patterson, Shanlin Liu, Weihua Huang, Guangzhu He, Shengchang Gu, Shengkang Li, Xin Zhou, Tak Wah Lam, Yingrui Li, Xun Xu, Gane Ka-Shu Wong, Jun Wang:
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads. Bioinform. 30(12): 1660-1666 (2014) - [j3]Weixin Wang, Panwen Wang, Feng Xu, Ruibang Luo, Maria P. Wong, Tak Wah Lam, Junwen Wang:
FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data. Bioinform. 30(17): 2498-2500 (2014) - [i2]Chi-Man Liu, Ruibang Luo, Tak Wah Lam:
GPU-Accelerated BWT Construction for Large Collection of Short Reads. CoRR abs/1401.7457 (2014) - [i1]Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak Wah Lam:
MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC). CoRR abs/1402.4876 (2014) - 2012
- [j2]Chi-Man Liu, Thomas K. F. Wong, Edward Wu, Ruibang Luo, Siu-Ming Yiu, Yingrui Li, Bingqiang Wang, Chang Yu, Xiaowen Chu, Kaiyong Zhao, Ruiqiang Li, Tak Wah Lam:
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads. Bioinform. 28(6): 878-879 (2012) - [j1]Binghang Liu, Jianying Yuan, Siu-Ming Yiu, Zhenyu Li, Yinlong Xie, Yanxiang Chen, Yujian Shi, Hao Zhang, Yingrui Li, Tak Wah Lam, Ruibang Luo:
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly. Bioinform. 28(22): 2870-2874 (2012) - [c1]Ruibang Luo, Chang Yu, Chi-Man Liu, Tak Wah Lam, Thomas K. F. Wong, Siu-Ming Yiu, Ruiqiang Li, Hing-Fung Ting:
Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples. BCB 2012: 163-169
Coauthor Index
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