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2020 – today
- 2024
[j39]Jiahao Lei, Peng Qiu, Zhaoyu Wu, Angang Ding, Jiateng Hu, Jingli Hou, Yihong Jiang, Hongji Pu, Qun Huang, Xing Zhang, Bo Li, Xin Wang, Kaichuang Ye, Zhijue Xu, Xinwu Lu
:
Integrative multi-omics analyses reveal vesicle transport as a potential target for thoracic aortic aneurysm. Comput. Biol. Medicine 170: 108071 (2024)- [j38]Xinling Li, Peng Qiu:
Gene representation bias in spatial transcriptomics. J. Bioinform. Comput. Biol. 22(3): 2450007:1-2450007:14 (2024) - [j37]Hong Seo Lim, Peng Qiu:
Quantifying the clusterness and trajectoriness of single-cell RNA-seq data. PLoS Comput. Biol. 20(2) (2024) - [c28]Ruiyang Ren, Peng Qiu, Yingqi Qu, Jing Liu, Xin Zhao, Hua Wu, Ji-Rong Wen, Haifeng Wang:
BASES: Large-scale Web Search User Simulation with Large Language Model based Agents. EMNLP (Findings) 2024: 902-917 - [i3]Ruiyang Ren, Peng Qiu, Yingqi Qu, Jing Liu, Wayne Xin Zhao, Hua Wu, Ji-Rong Wen, Haifeng Wang:
BASES: Large-scale Web Search User Simulation with Large Language Model based Agents. CoRR abs/2402.17505 (2024) - 2023
- [j36]Yi-Gang Chen, Yang-Chi-Dung Lin, Yijun Luo, Xiao-Xuan Cai, Peng Qiu, Shi-Dong Cui, Zhe Wang, Hsi-Yuan Huang, Hsien-Da Huang:
Quantitative model for genome-wide cyclic AMP receptor protein binding site identification and characteristic analysis. Briefings Bioinform. 24(3) (2023) - [j35]Xinling Li, Greg Gibson, Peng Qiu:
Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts. Frontiers Bioinform. 3 (2023) - [j34]Hong Seo Lim, Peng Qiu:
Quantifying Cell-Type-Specific Differences of Single-Cell Datasets Using Uniform Manifold Approximation and Projection for Dimension Reduction and Shapley Additive exPlanations. J. Comput. Biol. 30(7): 738-750 (2023) - [c27]Wenjing Lu, Jiahao Lei, Peng Qiu, Rui Sheng, Jinhua Zhou, Xinwu Lu, Yang Yang:
UPCoL: Uncertainty-Informed Prototype Consistency Learning for Semi-supervised Medical Image Segmentation. MICCAI (4) 2023: 662-672 - [i2]Stephen A. Goss, Robert J. Steininger, Dhruv Narayanan, Daniel V. Olivença, Yutong Sun, Peng Qiu, Jim Amato, Eberhard O. Voit, Walter E. Voit, Eric J. Kildebeck:
Polycraft World AI Lab (PAL): An Extensible Platform for Evaluating Artificial Intelligence Agents. CoRR abs/2301.11891 (2023) - [i1]Shunxing Bao, Sichen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun, Ruining Deng, Can Cui, Yike Li, Jia Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Subra Kugathasan, Peng Qiu, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, Yuankai Huo:
Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures. CoRR abs/2308.10166 (2023) - 2022
- [c26]Zhen Meng, Peng Qiu, Yueming Pan:
A contact pressure detection method of isolation switch based on Fiber Bragg Grating. ICCIR 2022: 539-543 - [c25]Jinyi Xiang, Peng Qiu, Yang Yang:
FUSSNet: Fusing Two Sources of Uncertainty for Semi-supervised Medical Image Segmentation. MICCAI (8) 2022: 481-491 - 2021
- [j33]Peng Qiu, Yixuan Li, Kai Liu, Jinbao Qin, Kaichuang Ye, Tao Chen, Xinwu Lu:
Prescreening and treatment of aortic dissection through an analysis of infinite-dimension data. BioData Min. 14(1): 24 (2021) - [j32]Hong Seo Lim, Peng Qiu:
JSOM: Jointly-evolving self-organizing maps for alignment of biological datasets and identification of related clusters. PLoS Comput. Biol. 17(3) (2021) - [c24]Congmin Xu, Quoc D. Mac, Qiong Jia, Peng Qiu:
Immune-Microbiota Crosstalk Underlying Inflammatory Bowel Disease. ISBRA 2021: 11-21 - [c23]Shuting Lin, Jie Zhou, Yiqiong Xiao, Bridget Neary, Yong Teng, Peng Qiu:
Identification of Protein Markers Predictive of Drug-Specific Survival Outcome in Cancers. ISBRA 2021: 58-67 - 2020
- [j31]Evan A. Clayton, Toyya A. Pujol, John F. McDonald, Peng Qiu:
Leveraging TCGA gene expression data to build predictive models for cancer drug response. BMC Bioinform. 21-S(14): 364 (2020) - [j30]Peng Qiu, Zhenghua Dai, Jianliang Xu, Qinghua Guo, Guangsuo Yu, Fuchen Wang:
On-line reset control of a commercial-scale opposed multi-burner coal-water slurry gasification system using dynamic reduced-order model. Comput. Chem. Eng. 143: 107074 (2020) - [j29]William Pilcher, Xingyu Yang, Anastasia Zhurikhina, Olga Chernaya, Yinghan Xu, Peng Qiu, Denis Tsygankov:
Shape-to-graph mapping method for efficient characterization and classification of complex geometries in biological images. PLoS Comput. Biol. 16(9) (2020) - [j28]Michael Youmans, John Christian Givhan Spainhour, Peng Qiu:
Classification of Antibacterial Peptides Using Long Short-Term Memory Recurrent Neural Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17(4): 1134-1140 (2020) - [c22]Hong Seo Lim, Madeline E. Smerchansky, Jingxuan Zhou, Paramita Chatterjee, Angela C. Jimenez, Xingyu Yang, Krishnendu Roy, Peng Qiu:
Image-based early predictions of functional properties in cell manufacturing. BIBM 2020: 2351-2356 - [c21]Jose F. Carreño, Peng Qiu:
Feature selection algorithms for predicting preeclampsia: A comparative approach. BIBM 2020: 2626-2631
2010 – 2019
- 2019
- [j27]Xinyu Zhang, Mo Zhou, Peng Qiu, Yi Huang, Jun Li:
Radar and vision fusion for the real-time obstacle detection and identification. Ind. Robot 46(3): 391-395 (2019) - [j26]Qinwei Zhuang, Brandon Alexander Holt, Gabriel A. Kwong, Peng Qiu:
Deconvolving multiplexed protease signatures with substrate reduction and activity clustering. PLoS Comput. Biol. 15(9) (2019) - [c20]Jing Liu, Dawei Qiu, Xuelan Zhang, Peng Qiu, Yibo Feng, Huifen Li:
An Efficient Cell Segmentation Algorithm Based on Unsupervised Clustering and Morphology. BIBM 2019: 2455-2460 - 2018
- [j25]Ying Huo, Peng Qiu, Jiyou Zhai, Dajuan Fan, Huanfeng Peng:
Multi-objective service composition model based on cost-effective optimization. Appl. Intell. 48(3): 651-669 (2018) - [j24]Jenny Jeong, Qinwei Zhuang, Mark K. Transtrum, Enlu Zhou, Peng Qiu:
Experimental design and model reduction in systems biology. Quant. Biol. 6(4): 287-306 (2018) - [j23]Ge Zhu, Xu-Ri Yao, Zhibin Sun, Peng Qiu, Chao Wang, Guang-Jie Zhai, Qing Zhao:
A High-Speed Imaging Method Based on Compressive Sensing for Sound Extraction Using a Low-Speed Camera. Sensors 18(5): 1524 (2018) - 2017
- [j22]John Christian Givhan Spainhour, Juho Lim, Peng Qiu:
GDISC: a web portal for integrative analysis of gene-drug interaction for survival in cancer. Bioinform. 33(9): 1426-1428 (2017) - [c19]Jenny Jeong, Peng Qiu:
The relative importance of data points in systems biology and parameter estimation. BIBM 2017: 367-373 - [c18]Michael Youmans, Christian Spainhour, Peng Qiu:
Long short-term memory recurrent neural networks for antibacterial peptide identification. BIBM 2017: 498-502 - [c17]Andrew Zhao, Denis Tsygankov, Peng Qiu:
Graph-based extraction of shape features for leaf classification. GlobalSIP 2017: 663-666 - [c16]Yi Lu, Jihong Li, Peng Qiu, Huangqing Xiao, Gaoren Liu, Zheng Xu:
Comparison of DC fault handling strategies for hybrid HVDC system. IECON 2017: 146-151 - [c15]Feng Xu, Yi Lu, Xiaohua Xuan, Peng Qiu, Kai Tong, Jiazhuo Xuan, Qian Chen, Daozhuo Jiang:
Research on flexible medium-voltage DC distribution technology based shore-to-ship power supply system. IECON 2017: 405-409 - [c14]Qian Chen, Peng Qiu, Yi Lu, Haihong Yu, Feng Xu, Kai Tong, Jiazhuo Xuan, Jiayi Wu:
Power loss and efficiency analysis of non-isolated weinberg converter. IECON 2017: 4443-4448 - 2016
- [j21]John Christian Givhan Spainhour, Peng Qiu:
Identification of gene-drug interactions that impact patient survival in TCGA. BMC Bioinform. 17: 409 (2016) - [j20]Mark K. Transtrum, Peng Qiu:
Bridging Mechanistic and Phenomenological Models of Complex Biological Systems. PLoS Comput. Biol. 12(5) (2016) - 2015
- [j19]Yan Xu, Peng Qiu, Badrinath Roysam:
Unsupervised Discovery of Subspace Trends. IEEE Trans. Pattern Anal. Mach. Intell. 37(10): 2131-2145 (2015) - [c13]Qing Duan, Jianhua Wang, Chunyan Ma, Binshi Gu, Baojian Ji, Peng Qiu, Jun You:
Flexible power distribution unit - A novel power electronic transformer development and demonstration for distribution system. IECON 2015: 534-537 - 2014
- [j18]Zixing Wang, F. Anthony San Lucas, Peng Qiu, Yin Liu:
Improving the sensitivity of sample clustering by leveraging gene co-expression networks in variable selection. BMC Bioinform. 15: 153 (2014) - [j17]Yanxun Xu, Xiaofeng Zheng, Yuan Yuan, Marcos R. Estecio, Jean-Pierre Issa, Peng Qiu, Yuan Ji, Shoudan Liang:
BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 11(6): 1038-1044 (2014) - [j16]Peng Qiu:
Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data. IEEE ACM Trans. Comput. Biol. Bioinform. 11(6): 1045-1051 (2014) - [c12]Zixing Wang, Peng Qiu, Wenlong Xu, Yin Liu:
Spectral feature selection and its application in high dimensional gene expression studies. BCB 2014: 314-320 - [c11]Chang-han Rhee, Enlu Zhou, Peng Qiu:
An iterative algorithm for sampling from manifolds. WSC 2014: 574-585 - 2013
- [j15]Peng Qiu, Sylvia K. Plevritis:
TreeVis: A MATLAB-based tool for tree visualization. Comput. Methods Programs Biomed. 109(1): 74-76 (2013) - [j14]Yihua Liu, Yuan Ji, Peng Qiu:
Identification of thresholds for dichotomizing DNA methylation data. EURASIP J. Bioinform. Syst. Biol. 2013: 8 (2013) - [c10]Yan Xu, Michalis A. Savelonas, Peng Qiu, Kristen Trett, William Shain, Badrinath Roysam:
Unsupervised inference of arbor morphology progression for microglia from confocal microscope images. ISBI 2013: 1356-1359 - 2012
- [j13]Michael D. Linderman, Zach Bjornson, Erin F. Simonds, Peng Qiu, Robert V. Bruggner, Ketaki Sheode, Teresa H. Meng, Sylvia K. Plevritis, Garry P. Nolan:
CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data. Bioinform. 28(18): 2400-2401 (2012) - [j12]Mark K. Transtrum, Peng Qiu:
Optimal experiment selection for parameter estimation in biological differential equation models. BMC Bioinform. 13: 181 (2012) - [j11]Peng Qiu, Li Zhang:
Identification of markers associated with global changes in DNA methylation regulation in cancers. BMC Bioinform. 13(S-13): S7 (2012) - [c9]Yihua Liu, Peng Qiu:
Integrative analysis of methylation and gene expression data in TCGA. GENSiPS 2012: 1-4 - [c8]Peng Qiu:
Toward exhaustive gating of flow cytometry data. GENSiPS 2012: 183-186 - 2011
- [j10]Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis:
Discovering Biological Progression Underlying Microarray Samples. PLoS Comput. Biol. 7(4) (2011) - [j9]Peng Qiu, Sylvia K. Plevritis:
Reconstructing Directed Signed Gene Regulatory Network From Microarray Data. IEEE Trans. Biomed. Eng. 58(12): 3518-3521 (2011) - 2010
- [j8]Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis:
Reducing the Computational Complexity of Information Theoretic Approaches for Reconstructing Gene Regulatory Networks. J. Comput. Biol. 17(2): 169-176 (2010) - [c7]Yun Zhang, Yujun Feng, Di Wu, Chenxi Hou, Peng Qiu:
Dynamic spectrum allocation engine based on DS theory and potential game. ICNC 2010: 2092-2096
2000 – 2009
- 2009
- [j7]Peng Qiu, Andrew J. Gentles, Sylvia K. Plevritis:
Fast calculation of pairwise mutual information for gene regulatory network reconstruction. Comput. Methods Programs Biomed. 94(2): 177-180 (2009) - [j6]Peng Qiu, Sylvia K. Plevritis:
Simultaneous Class Discovery and Classification of Microarray Data Using Spectral Analysis. J. Comput. Biol. 16(7): 935-944 (2009) - [j5]Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zsolt Szabo:
An Activity-Subspace Approach for Estimating the Integrated Input Function and Relative Distribution Volume in PET Parametric Imaging. IEEE Trans. Inf. Technol. Biomed. 13(1): 25-36 (2009) - [c6]Peng Qiu, Guanglong Wang, Jianglei Lu, Shuang Feng:
Modeling of Neuron Based on Single Electron Transistor. CSO (1) 2009: 359-363 - 2008
- [c5]Peng Qiu, K. J. Ray Liu:
A robust method for QRS detection based on modified p-spectrum. ICASSP 2008: 501-504 - 2007
- [j4]Peng Qiu, Z. Jane Wang, K. J. Ray Liu, Zhang-Zhi Hu, Cathy H. Wu:
Dependence network modeling for biomarker identification. Bioinform. 23(2): 198-206 (2007) - [j3]Peng Qiu, Z. Jane Wang, K. J. Ray Liu:
Genomic processing for cancer classification and prediction - Abroad review of the recent advances in model-based genomoric and proteomic signal processing for cancer detection. IEEE Signal Process. Mag. 24(1): 100-110 (2007) - 2006
- [j2]Peng Qiu, Z. Jane Wang, K. J. Ray Liu:
Polynomial model approach for resynchronization analysis of cell-cycle gene expression data. Bioinform. 22(8): 959-966 (2006) - [c4]Peng Qiu, Z. Jane Wang, K. J. Ray Liu:
Dependence model and network for biomarker identification and cancer classification. EUSIPCO 2006: 1-5 - [c3]Peng Qiu, Z. Jane Wang, K. J. Ray Liu:
Mixture principal component analysis for distribution volume parametric imaging in brain PET studies. ISBI 2006: 928-931 - 2005
- [j1]Peng Qiu, Z. Jane Wang, K. J. Ray Liu:
Ensemble dependence model for classification and prediction of cancer and normal gene expression data. Bioinform. 21(14): 3114-3121 (2005) - 2004
- [c2]Jichang Cao, Peng Qiu, Bin Zhang, Chun Li:
The Research of Storage Management and Address Mapping Mechanism in UCard. CCCT (1) 2004: 333-337 - [c1]Jichang Cao, Bin Zhang, Peng Qiu, Chun Li, Fan Zhang:
Research on the Foundation Protocols of UCard. CCCT (1) 2004: 338-342
Coauthor Index
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