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ORCIDJulie C. Mitchell
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2020 – today
- 2022
[j20]Russell B. Davidson
, Jess Woods, T. Chad Effler, Mathialakan Thavappiragasam, Julie C. Mitchell, Jerry M. Parks, Ada Sedova:
OpenMDlr: parallel, open-source tools for general protein structure modeling and refinement from pairwise distances. Bioinform. 38(12): 3297-3298 (2022)- [j19]Shih-Hsien Liu, Zhousheng Xiao, Sambit K. Mishra, Julie C. Mitchell, Jeremy C. Smith, L. Darryl Quarles, Loukas Petridis:
Identification of Small-Molecule Inhibitors of Fibroblast Growth Factor 23 Signaling via In Silico Hot Spot Prediction and Molecular Docking to α-Klotho. J. Chem. Inf. Model. 62(15): 3627-3637 (2022) - 2020
- [j18]Xiaolei Zhu, Ling Liu, Jingjing He, Ting Fang, Yi Xiong, Julie C. Mitchell:
iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots. BMC Bioinform. 21(1): 289 (2020) - [j17]Atanu Acharya, Rupesh Agarwal, Matthew B. Baker, Jérôme Baudry, Debsindhu Bhowmik, Swen Böhm, Kendall G. Byler, Sam Yen-Chi Chen, Leighton Coates, Connor J. Cooper, Omar Demerdash, Isabella Daidone, John D. Eblen, Sally R. Ellingson, Stefano Forli, Jens Glaser, James C. Gumbart, John Gunnels, Oscar R. Hernandez, Stephan Irle, Daniel W. Kneller, Andrey Kovalevsky, Jeffrey M. Larkin, Travis J. Lawrence, Scott LeGrand, Shih-Hsien Liu, Julie C. Mitchell, Gilchan Park, Jerry M. Parks, Anna Pavlova, Loukas Petridis, Duncan Poole, Line Pouchard, Arvind Ramanathan, David M. Rogers, Diogo Santos-Martins, Aaron Scheinberg, Ada Sedova, Yue Shen, Jeremy C. Smith, Micholas Dean Smith, Carlos Soto, Aristides Tsaris, Mathialakan Thavappiragasam, Andreas F. Tillack, Josh Vincent Vermaas, Van Quan Vuong, Junqi Yin, Shinjae Yoo, Mai Zahran, Laura Zanetti Polzi:
Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19. J. Chem. Inf. Model. 60(12): 5832-5852 (2020)
2010 – 2019
- 2019
- [j16]Huikun Zhang, Spencer S. Ericksen, Ching-pei Lee, Gene E. Ananiev, Nathan Wlodarchak, Peng Yu, Julie C. Mitchell, Anthony Gitter, Stephen J. Wright, F. Michael Hoffmann, Scott A. Wildman, Michael A. Newton:
Predicting kinase inhibitors using bioactivity matrix derived informer sets. PLoS Comput. Biol. 15(8) (2019) - 2018
- [j15]Ling Liu, Yi Xiong, Hongyun Gao, Dong-Qing Wei, Julie C. Mitchell, Xiaolei Zhu:
dbAMEPNI: a database of alanine mutagenic effects for protein-nucleic acid interactions. Database J. Biol. Databases Curation 2018: bay034 (2018) - 2016
- [j14]Shravan Sukumar, Xiaolei Zhu, Spencer S. Ericksen, Julie C. Mitchell:
DBSI server: DNA binding site identifier. Bioinform. 32(18): 2853-2855 (2016) - 2011
- [j13]Raman Lall, Timothy J. Donohue, Simeone Marino, Julie C. Mitchell:
Optimizing ethanol production selectivity. Math. Comput. Model. 53(7-8): 1363-1373 (2011) - 2010
- [j12]Anna Yershova, Swati Jain, Steven M. LaValle, Julie C. Mitchell:
Generating Uniform Incremental Grids on SO(3) Using the Hopf Fibration. Int. J. Robotics Res. 29(7): 801-812 (2010) - [j11]Yann S. Dufour, Gary E. Wesenberg, Andrew J. Tritt, Jeremy D. Glasner, Nicole T. Perna, Julie C. Mitchell, Timothy J. Donohue:
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays. Nucleic Acids Res. 38(Web-Server-Issue): 321-325 (2010)
2000 – 2009
- 2009
- [j10]David Dynerman, Erick Butzlaff, Julie C. Mitchell:
CUSA and CUDE: GPU-Accelerated Methods for Estimating Solvent Accessible Surface Area and Desolvation. J. Comput. Biol. 16(4): 523-537 (2009) - [j9]Omar N. A. Demerdash, Michael D. Daily, Julie C. Mitchell:
Structure-Based Predictive Models for Allosteric Hot Spots. PLoS Comput. Biol. 5(10) (2009) - 2008
- [j8]Ryan M. Bannen, Vanitha Suresh, George N. Phillips Jr., Stephen J. Wright, Julie C. Mitchell:
Optimal design of thermally stable proteins. Bioinform. 24(20): 2339-2343 (2008) - [j7]Steven J. Darnell, Laura H. LeGault, Julie C. Mitchell:
KFC Server: interactive forecasting of protein interaction hot spots. Nucleic Acids Res. 36(Web-Server-Issue): 265-269 (2008) - [j6]Julie C. Mitchell:
Sampling Rotation Groups by Successive Orthogonal Images. SIAM J. Sci. Comput. 30(1): 525-547 (2008) - [c2]Anna Yershova, Steven M. LaValle, Julie C. Mitchell:
Generating Uniform Incremental Grids on SO(3) Using the Hopf Fibration. WAFR 2008: 385-399 - 2007
- [j5]Raman Lall, Julie C. Mitchell:
Metal reduction kinetics in Shewanella. Bioinform. 23(20): 2754-2759 (2007) - [j4]Roummel F. Marcia, Julie C. Mitchell, J. Ben Rosen:
Multi-funnel optimization using Gaussian underestimation. J. Glob. Optim. 39(1): 39-48 (2007) - [j3]Roummel F. Marcia, Julie C. Mitchell, Stephen J. Wright:
Global optimization in protein docking using clustering, underestimation and semidefinite programming. Optim. Methods Softw. 22(5): 803-811 (2007) - 2005
- [j2]Roummel F. Marcia, Julie C. Mitchell, J. Ben Rosen:
Iterative Convex Quadratic Approximation for Global Optimization in Protein Docking. Comput. Optim. Appl. 32(3): 285-297 (2005) - 2000
- [e1]Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig:
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA. AAAI 2000, ISBN 1-57735-115-0 [contents]
1990 – 1999
- 1999
- [c1]Julie C. Mitchell, J. Ben Rosen, Andrew T. Phillips, Lynn F. Ten Eyck:
Coupled optimization in protein docking. RECOMB 1999: 280-284 - 1996
- [j1]Carlos Alberto Montanari, M. S. Tute, A. E. Beezer, Julie C. Mitchell:
Determination of receptor-bound drug conformations by QSAR using flexible fitting to derive a molecular similarity index. J. Comput. Aided Mol. Des. 10(1): 67-73 (1996)
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