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2020 – today
- 2021
[j10]Florian Huber
, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, Faruk Diblen, Simon Rogers, Justin J. J. van der Hooft:
Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. PLoS Comput. Biol. 17(2) (2021)- 2020
- [j9]Florian Huber, Stefan Verhoeven, Christiaan Meijer, Hanno Spreeuw, Efraín Castilla, Cunliang Geng, Justin J. J. van der Hooft, Simon Rogers, Adam Belloum, Faruk Diblen, Jurriaan H. Spaaks:
matchms - processing and similarity evaluation of mass spectrometry data. J. Open Source Softw. 5(52): 2411 (2020)
2010 – 2019
- 2018
- [c2]Jurriaan H. Spaaks, Tom Klaver, Stefan Verhoeven, Jason Maassen, Tom Bakker, Atze van der Ploeg, Ben van Werkhoven, Willem Robert van Hage, Rob V. van Nieuwpoort:
Painting the Picture of Software Impact with the Research Software Directory. eScience 2018: 23-24 - [c1]Arnold Kuzniar, Jason Maassen, Stefan Verhoeven, Luca Santuari, Carl Shneider, Wigard Kloosterman, Jeroen de Ridder:
A Portable and Scalable Workflow for Detecting Structural Variants in Whole-Genome Sequencing Data. eScience 2018: 303-304 - 2017
- [j8]Ross McGuire, Stefan Verhoeven, Márton Vass, Gerrit Vriend, Iwan J. P. de Esch, Scott J. Lusher, Rob Leurs, Lars Ridder, Albert J. Kooistra, Tina Ritschel, Chris de Graaf:
3D-e-Chem-VM: Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine. J. Chem. Inf. Model. 57(2): 115-121 (2017) - 2016
- [j7]Oscar Martinez-Rubi, Maurice de Kleijn, Stefan Verhoeven, Niels Drost, Jisk Attema, Maarten A. J. van Meersbergen, Rob van Nieuwpoort, Rens de Hond, Eduardo Dias, Pjotr Svetachov:
Using modular 3D digital earth applications based on point clouds for the study of complex sites. Int. J. Digit. Earth 9(12): 1135-1152 (2016) - 2013
- [j6]Wilco W. M. Fleuren, Erik J. M. Toonen, Stefan Verhoeven, Raoul Frijters, Tim Hulsen, Ton Rullmann, René C. van Schaik, Jacob de Vlieg, Wynand Alkema:
Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining. BioData Min. 6: 2 (2013) - 2011
- [j5]Marijn P. A. Sanders, Wilco W. M. Fleuren, Stefan Verhoeven, Sven van den Beld, Wynand Alkema, Jacob de Vlieg, Jan P. G. Klomp:
ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs. BMC Bioinform. 12: 332 (2011) - [j4]Marijn P. A. Sanders, Stefan Verhoeven, Chris de Graaf, Luc Roumen, Bas Vroling, Sander B. Nabuurs, Jacob de Vlieg, Jan P. G. Klomp:
Snooker: A Structure-Based Pharmacophore Generation Tool Applied to Class A GPCRs. J. Chem. Inf. Model. 51(9): 2277-2292 (2011) - [j3]Bas Vroling, Marijn P. A. Sanders, Coos Baakman, Annika Borrmann, Stefan Verhoeven, Jan P. G. Klomp, Laerte Oliveira, Jacob de Vlieg, Gert Vriend:
GPCRDB: information system for G protein-coupled receptors. Nucleic Acids Res. 39(Database-Issue): 309-319 (2011) - [j2]Wilco W. M. Fleuren, Stefan Verhoeven, Raoul Frijters, Bart Heupers, Jan Polman, René C. van Schaik, Jacob de Vlieg, Wynand Alkema:
CoPub update: CoPub 5.0 a text mining system to answer biological questions. Nucleic Acids Res. 39(Web-Server-Issue): 450-454 (2011)
2000 – 2009
- 2005
- [j1]Blaise T. F. Alako, Antoine Veldhoven, Sjozef van Baal, Rob Jelier, Stefan Verhoeven, Ton Rullmann, Jan Polman, Guido Jenster:
CoPub Mapper: mining MEDLINE based on search term co-publication. BMC Bioinform. 6: 51 (2005)
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