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2020 – today
- 2023
[c8]Chao-Hui Huang, Yoson Park, Jincheng Pang, Jadwiga R. Bienkowska:
Single-cell gene expression prediction using H&E images based on spatial transcriptomics. Digital and Computational Pathology 2023
2010 – 2019
- 2019
- [c7]Shibing Deng, Joy Hsu, Jadwiga R. Bienkowska, Paul A. Rejto, Tao Xie:
Detecting somatic mutations with high accuracy in plasma cell-free DNA with TNER2. BIBM 2019: 78-81 - 2018
- [j9]Shibing Deng, Maruja Lira, Donghui Huang, Kai Wang
, Crystal Valdez, Jennifer Kinong, Paul A. Rejto, Jadwiga R. Bienkowska, James Hardwick, Tao Xie:
TNER: a novel background error suppression method for mutation detection in circulating tumor DNA. BMC Bioinform. 19(1): 387:1-387:7 (2018) - 2015
- [j8]Sean Simmons, Jian Peng, Jadwiga R. Bienkowska, Bonnie Berger:
Discovering What Dimensionality Reduction Really Tells Us About RNA-Seq Data. J. Comput. Biol. 22(8): 715-728 (2015) - 2014
- [j7]Raghavendra Hosur, Suzanne Szak, Alice Thai, Norm Allaire, Jadwiga R. Bienkowska:
ProbeSelect: selecting differentially expressed probes in transcriptional profile data. Bioinform. 30(4): 574-575 (2014) - 2011
- [j6]Heming Xing, Paul D. McDonagh, Jadwiga R. Bienkowska, Tanya Cashorali, Karl Runge, Robert E. Miller, Dave DeCaprio, Bruce Church, Ronenn Roubenoff, Iya G. Khalil, John Carulli:
Causal Modeling Using Network Ensemble Simulations of Genetic and Gene Expression Data Predicts Genes Involved in Rheumatoid Arthritis. PLoS Comput. Biol. 7(3) (2011)
2000 – 2009
- 2008
- [j5]Vinay Pulim, Bonnie Berger, Jadwiga R. Bienkowska:
Optimal contact map alignment of protein-protein interfaces. Bioinform. 24(20): 2324-2328 (2008) - 2007
- [c6]Peter Warren, Deanne M. Taylor, Paolo G. V. Martini, Jennifer Jackson, Jadwiga R. Bienkowska:
PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays. BIBE 2007: 108-115 - [c5]Vinay Pulim, Jadwiga R. Bienkowska, Bonnie Berger:
Lthreader: Prediction of Ligand-Receptor Interactions Using Localized Threading. Pacific Symposium on Biocomputing 2007: 64-75 - 2005
- [c4]Boris Hayete, Jadwiga R. Bienkowska:
GOTrees: Predicting GO Associations from Protein Domain Composition Using Decision Trees. Pacific Symposium on Biocomputing 2005: 140-151 - 2002
- [j4]Jadwiga R. Bienkowska:
Using fold recognition to search for useful proteins: Bayesian approach to fold recognition. Briefings Bioinform. 3(1): 45-58 (2002) - 2001
- [j3]Jadwiga R. Bienkowska, Hongxian He, Temple F. Smith:
Automatic Pattern Embedding in Protein Structure Models. IEEE Intell. Syst. 16(6): 21-25 (2001) - 2000
- [c3]Jadwiga R. Bienkowska, Lihua Yu, Sophia Zarakhovich, Robert G. Rogers, Temple F. Smith:
Comprehensive statistical method for protein fold recognition. RECOMB 2000: 76-85
1990 – 1999
- 1999
- [j2]Jadwiga R. Bienkowska, Robert G. Rogers, Temple F. Smith:
Performance of Threading Scoring Functions Designed Using New Optimization Method. J. Comput. Biol. 6(3/4): 299-311 (1999) - [c2]Jadwiga R. Bienkowska, Robert G. Rogers, Temple F. Smith:
A method for optimal design of a threading scoring function. RECOMB 1999: 25-32 - 1997
- [j1]Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Chrysanthe Gaitatzes, Robert G. Rogers, Richard H. Lathrop:
Current Limitations to Protein Threading Approaches. J. Comput. Biol. 4(3): 217-225 (1997) - [c1]Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Robert G. Rogers, Chrysanthe Gaitatzes, Richard H. Lathrop:
The threading approach to the inverse protein folding problem. RECOMB 1997: 287-292
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