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ORCIDIvo F. Sbalzarini
Person information
- affiliation: TU Dresden, Germany
- affiliation: Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- affiliation: ETH Zurich, Switzerland
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2020 – today
- 2024
[j36]Lennart J. Schulze
, Sachin K. Thekke Veettil, Ivo F. Sbalzarini:
A high-order fully Lagrangian particle level-set method for dynamic surfaces. J. Comput. Phys. 515: 113262 (2024)- [j35]Johannes Pahlke, Ivo F. Sbalzarini:
Proven Distributed Memory Parallelization of Particle Methods. ACM Trans. Parallel Comput. 11(4): 17:1-17:45 (2024) - [c29]Jan Tiemann, Matthew McGinity, Ivo F. Sbalzarini, Ulrik Günther:
Live and Interactive 3D Photomanipulation under the Microscope using Virtual Reality. CHI Extended Abstracts 2024: 228:1-228:7 - [i33]Johannes Pahlke, Ivo F. Sbalzarini:
Proven Distributed Memory Parallelization of Particle Methods. CoRR abs/2401.02180 (2024) - [i32]Roua Rouatbi, Juan Esteban Suarez, Ivo F. Sbalzarini:
Push-Forward Signed Distance Functions enable interpretable and robust continuous shape quantification. CoRR abs/2410.21004 (2024) - 2023
- [j34]Pietro Incardona, Aryaman Gupta, Serhii Yaskovets, Ivo F. Sbalzarini:
A portable C++ library for memory and compute abstraction on multi-core CPUs and GPUs. Concurr. Comput. Pract. Exp. 35(25) (2023) - [j33]Sarah Perez, Suryanarayana Maddu, Ivo F. Sbalzarini, Philippe Poncet:
Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems. J. Comput. Phys. 491: 112342 (2023) - [j32]Justina Stark, Ivo F. Sbalzarini:
An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media. J. Comput. Sci. 72: 102118 (2023) - [j31]Abhinav Singh, Alejandra Foggia, Pietro Incardona, Ivo F. Sbalzarini:
A Meshfree Collocation Scheme for Surface Differential Operators on Point Clouds. J. Sci. Comput. 96(3): 89 (2023) - [j30]Johannes Pahlke, Ivo F. Sbalzarini:
A Unifying Mathematical Definition of Particle Methods. IEEE Open J. Comput. Soc. 4: 97-108 (2023) - [j29]Sachin K. Thekke Veettil, Gentian Zavalani, Uwe Hernandez Acosta, Ivo F. Sbalzarini, Michael Hecht:
Global Polynomial Level Sets for Numerical Differential Geometry of Smooth Closed Surfaces. SIAM J. Sci. Comput. 45(4): 1995- (2023) - [c28]Aryaman Gupta, Pietro Incardona, Anton Brock, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini:
Parallel Compositing of Volumetric Depth Images for Interactive Visualization of Distributed Volumes at High Frame Rates. EGPGV@EuroVis 2023: 25-35 - [c27]Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, Ivo F. Sbalzarini:
Efficient Raycasting of Volumetric Depth Images for Remote Visualization of Large Volumes at High Frame Rates. PacificVis 2023: 61-70 - [i31]Johannes Pahlke, Ivo F. Sbalzarini:
Computational Power of Particle Methods. CoRR abs/2304.10286 (2023) - [i30]Justina Stark, Ivo F. Sbalzarini:
An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media. CoRR abs/2304.11165 (2023) - [i29]Lennart J. Schulze, Sachin K. Thekke Veettil, Ivo F. Sbalzarini:
A high-order fully Lagrangian particle level-set method for dynamic surfaces. CoRR abs/2306.07986 (2023) - [i28]Dominik Sturm, Suryanarayana Maddu, Ivo F. Sbalzarini:
Learning locally dominant force balances in active particle systems. CoRR abs/2307.14970 (2023) - [i27]Abhinav Singh, Landfried Kraatz, Pietro Incardona, Ivo F. Sbalzarini:
A Distributed Algebra System for Time Integration on Parallel Computers. CoRR abs/2309.05331 (2023) - 2022
- [j28]Nesrine Khouzami, Friedrich Michel, Pietro Incardona, Jerónimo Castrillón, Ivo F. Sbalzarini:
Model-based autotuning of discretization methods in numerical simulations of partial differential equations. J. Comput. Sci. 57: 101489 (2022) - [j27]Suryanarayana Maddu, Dominik Sturm, Christian L. Müller, Ivo F. Sbalzarini:
Inverse Dirichlet weighting enables reliable training of physics informed neural networks. Mach. Learn. Sci. Technol. 3(1): 15026 (2022) - [j26]Joel Jonsson, Bevan L. Cheeseman, Suryanarayana Maddu, Krzysztof Gonciarz, Ivo F. Sbalzarini:
Parallel Discrete Convolutions on Adaptive Particle Representations of Images. IEEE Trans. Image Process. 31: 4197-4212 (2022) - [c26]Pietro Incardona, Aryaman Gupta, Serhii Yaskovets, Ivo F. Sbalzarini:
A C++ Library for Memory Layout and Performance Portability of Scientific Applications. Euro-Par Workshops 2022: 109-120 - [i26]Suryanarayana Maddu, Quentin Vagne, Ivo F. Sbalzarini:
Learning deterministic hydrodynamic equations from stochastic active particle dynamics. CoRR abs/2201.08623 (2022) - [i25]Abhinav Singh, Alejandra Foggia, Pietro Incardona, Ivo F. Sbalzarini:
Mesh-free collocation for surface differential operators. CoRR abs/2205.10898 (2022) - [i24]Aryaman Gupta, Ulrik Günther, Pietro Incardona, Guido Reina, Steffen Frey, Stefan Gumhold, Ivo F. Sbalzarini:
Efficient Raycasting of View-Dependent Piecewise Constant Representations of Volumetric Data. CoRR abs/2206.08660 (2022) - [i23]Aryaman Gupta, Pietro Incardona, Paul Hunt, Guido Reina, Steffen Frey, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini:
Content-adaptive generation and parallel compositing of volumetric depth images for responsive visualization of large volume data. CoRR abs/2206.14503 (2022) - [i22]Luke Hyman, Ivo F. Sbalzarini, Stephen Quake, Ulrik Günther:
Corvo: Visualizing CellxGene Single-Cell Datasets in Virtual Reality. CoRR abs/2212.00519 (2022) - [i21]Sachin K. Thekke Veettil, Gentian Zavalani, Uwe Hernandez Acosta, Ivo F. Sbalzarini, Michael Hecht:
Global Polynomial Level Sets for Numerical Differential Geometry of Smooth Closed Surfaces. CoRR abs/2212.11536 (2022) - 2021
- [c25]Nesrine Khouzami, Lars Schütze, Pietro Incardona, Landfried Kraatz, Tina Subic, Jerónimo Castrillón, Ivo F. Sbalzarini:
The OpenPME Problem Solving Environment for Numerical Simulations. ICCS (1) 2021: 614-627 - [c24]Anastasia Solomatina, Yannis Kalaidzidis, Alice Cezanne, Karen Soans, Caren Norden, Marino Zerial, Ivo F. Sbalzarini:
Particle-Based Segmentation Of Extended Objects On Curved Biological Membranes. ISBI 2021: 1150-1154 - [c23]Pietro Incardona, Tommaso Bianucci, Ivo F. Sbalzarini:
Distributed Sparse Block Grids on GPUs. ISC 2021: 272-290 - [i20]Suryanarayana Maddu, Dominik Sturm, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini:
STENCIL-NET: Data-driven solution-adaptive discretization of partial differential equations. CoRR abs/2101.06182 (2021) - [i19]Johannes Bamme, Ivo F. Sbalzarini:
A Mathematical Definition of Particle Methods. CoRR abs/2105.05637 (2021) - [i18]Suryanarayana Maddu, Dominik Sturm, Christian L. Müller, Ivo F. Sbalzarini:
Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks. CoRR abs/2107.00940 (2021) - [i17]Joel Jonsson, Bevan L. Cheeseman, Suryanarayana Maddu, Krzysztof Gonciarz, Ivo F. Sbalzarini:
Parallel Discrete Convolutions on Adaptive Particle Representations of Images. CoRR abs/2112.03592 (2021) - 2020
- [j25]Ivo F. Sbalzarini:
Big-Data Analytics transformiert die Lebenswissenschaften. Inform. Spektrum 42(6): 394-400 (2020) - [c22]Ulrik Günther, Kyle I. S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini:
Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. ECCV Workshops (1) 2020: 280-297 - [c21]Aryaman Gupta, Pietro Incardona, Ata Deniz Aydin, Stefan Gumhold, Ulrik Günther, Ivo F. Sbalzarini:
An Architecture for Interactive In Situ Visualization and its Transparent Implementation in OpenFPM. ISAV@SC 2020: 20-26 - [i16]Ulrik Günther, Kyle I. S. Harrington, Raimund Dachselt, Ivo F. Sbalzarini:
Bionic Tracking: Using Eye Tracking to Track Biological Cells in Virtual Reality. CoRR abs/2005.00387 (2020) - [i15]Karl B. Hoffmann, Ivo F. Sbalzarini:
A robustness measure for singular point and index estimation in discretized orientation and vector fields. CoRR abs/2009.14570 (2020) - [i14]Michael Hecht, Krzysztof Gonciarz, Jannik Michelfeit, Vladimir Sivkin, Ivo F. Sbalzarini:
Multivariate Interpolation on Unisolvent Nodes - Lifting the Curse of Dimensionality. CoRR abs/2010.10824 (2020) - [i13]Suryanarayana Maddu, Bevan L. Cheeseman, Christian L. Müller, Ivo F. Sbalzarini:
Learning physically consistent mathematical models from data using group sparsity. CoRR abs/2012.06391 (2020)
2010 – 2019
- 2019
- [j24]Pietro Incardona, Antonio Leo, Yaroslav Zaluzhnyi, Rajesh Ramaswamy, Ivo F. Sbalzarini:
OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers. Comput. Phys. Commun. 241: 155-177 (2019) - [c20]Aryaman Gupta, Ulrik Günther, Pietro Incardona, Ata Deniz Aydin, Raimund Dachselt, Stefan Gumhold, Ivo F. Sbalzarini:
A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations. LDAV 2019: 95-96 - [c19]Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I. S. Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini:
scenery: Flexible Virtual Reality Visualization on the Java VM. IEEE VIS (Short Papers) 2019: 166-170 - [i12]Ulrik Günther, Tobias Pietzsch, Aryaman Gupta, Kyle I. S. Harrington, Pavel Tomancak, Stefan Gumhold, Ivo F. Sbalzarini:
scenery - Flexible Virtual Reality Visualisation on the Java VM. CoRR abs/1906.06726 (2019) - [i11]Suryanarayana Maddu, Bevan L. Cheeseman, Ivo F. Sbalzarini, Christian L. Müller:
Stability selection enables robust learning of partial differential equations from limited noisy data. CoRR abs/1907.07810 (2019) - [i10]Aryaman Gupta, Ulrik Günther, Pietro Incardona, Ata Deniz Aydin, Raimund Dachselt, Stefan Gumhold, Ivo F. Sbalzarini:
A Proposed Framework for Interactive Virtual Reality In Situ Visualization of Parallel Numerical Simulations. CoRR abs/1909.02986 (2019) - 2018
- [j23]Sven Karol, Tobias Nett, Jerónimo Castrillón, Ivo F. Sbalzarini:
A Domain-Specific Language and Editor for Parallel Particle Methods. ACM Trans. Math. Softw. 44(3): 34:1-34:32 (2018) - [i9]Pietro Incardona, Antonio Leo, Yaroslav Zaluzhnyi, Rajesh Ramaswamy, Ivo F. Sbalzarini:
OpenFPM: A scalable open framework for particle and particle-mesh codes on parallel computers. CoRR abs/1804.07598 (2018) - 2017
- [j22]Oleksandr Ostrenko, Pietro Incardona, Rajesh Ramaswamy, Lutz Brusch, Ivo F. Sbalzarini:
pSSAlib: The partial-propensity stochastic chemical network simulator. PLoS Comput. Biol. 13(12) (2017) - [j21]Yuanhao Gong, Ivo F. Sbalzarini:
Curvature Filters Efficiently Reduce Certain Variational Energies. IEEE Trans. Image Process. 26(4): 1786-1798 (2017) - [c18]Gerald Hempel, Andrés Goens, Jerónimo Castrillón, Josefine Asmus, Ivo F. Sbalzarini:
Robust Mapping of Process Networks to Many-Core Systems using Bio-Inspired Design Centering. SCOPES 2017: 21-30 - [i8]Tobias Nett, Sven Karol, Jerónimo Castrillón, Ivo F. Sbalzarini:
A Domain-Specific Language and Editor for Parallel Particle Methods. CoRR abs/1704.00032 (2017) - 2016
- [j20]Yuanhao Gong, Ivo F. Sbalzarini:
A Natural-Scene Gradient Distribution Prior and its Application in Light-Microscopy Image Processing. IEEE J. Sel. Top. Signal Process. 10(1): 99-114 (2016) - [j19]Xun Xiao, Veikko F. Geyer, Hugo Bowne-Anderson, Jonathon Howard, Ivo F. Sbalzarini:
Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets. Medical Image Anal. 32: 157-172 (2016) - 2015
- [j18]Rajesh Ramaswamy, George Bourantas, Frank Jülicher, Ivo F. Sbalzarini:
A hybrid particle-mesh method for incompressible active polar viscous gels. J. Comput. Phys. 291: 334-361 (2015) - 2014
- [j17]Omar Awile, Ivo F. Sbalzarini:
A Pthreads Wrapper for Fortran 2003. ACM Trans. Math. Softw. 40(3): 19:1-19:15 (2014) - [c17]Yuanhao Gong, Ivo F. Sbalzarini:
Image Enhancement by Gradient Distribution Specification. ACCV Workshops (2) 2014: 47-62 - [c16]Josefine Asmus, Daniel Borchmann, Ivo F. Sbalzarini, Dirk Walther:
Towards an FCA-based Recommender System for Black-Box Optimization. FCA4AI@ECAI 2014: 35-42 - [c15]Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini:
An adaptive distributed resampling algorithm with non-proportional allocation. ICASSP 2014: 1635-1639 - [i7]Ivo F. Sbalzarini, Sophie Schneider, Janick Cardinale:
Particle methods enable fast and simple approximation of Sobolev gradients in image segmentation. CoRR abs/1403.0240 (2014) - [i6]Yuanhao Gong, Ivo F. Sbalzarini:
Gradient Distribution Priors for Biomedical Image Processing. CoRR abs/1408.3300 (2014) - 2013
- [j16]Arun Shivanandan, Aleksandra Radenovic, Ivo F. Sbalzarini:
MosaicIA: an ImageJ/Fiji plugin for spatial pattern and interaction analysis. BMC Bioinform. 14: 349 (2013) - [j15]Grégory Paul, Janick Cardinale, Ivo F. Sbalzarini:
Coupling Image Restoration and Segmentation: A Generalized Linear Model/Bregman Perspective. Int. J. Comput. Vis. 104(1): 69-93 (2013) - [j14]Ferit Büyükkeçeci, Omar Awile, Ivo F. Sbalzarini:
A portable OpenCL implementation of generic particle-mesh and mesh-particle interpolation in 2D and 3D. Parallel Comput. 39(2): 94-111 (2013) - [j13]Oliwia M. Szklarczyk, Nélido González-Segredo, Philipp Kukura, Ariella Oppenheim, Daniel Choquet, Vahid Sandoghdar, Ari Helenius, Ivo F. Sbalzarini, Helge Ewers:
Receptor Concentration and Diffusivity Control Multivalent Binding of Sv40 to Membrane Bilayers. PLoS Comput. Biol. 9(11) (2013) - [j12]Nicolas Fiétier, Ömer Demirel, Ivo F. Sbalzarini:
A Meshless Particle Method for Poisson and Diffusion Problems with Discontinuous Coefficients and Inhomogeneous Boundary Conditions. SIAM J. Sci. Comput. 35(6) (2013) - [c14]Yuanhao Gong, Ivo F. Sbalzarini:
Local weighted Gaussian curvature for image processing. ICIP 2013: 534-538 - [i5]Ömer Demirel, Ivo F. Sbalzarini:
Balanced offline allocation of weighted balls into bins. CoRR abs/1304.2881 (2013) - [i4]Ömer Demirel, Ivo F. Sbalzarini:
Balancing indivisible real-valued loads in arbitrary networks. CoRR abs/1308.0148 (2013) - [i3]Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini:
PPF - A Parallel Particle Filtering Library. CoRR abs/1310.5045 (2013) - [i2]Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini:
Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering. CoRR abs/1310.5541 (2013) - 2012
- [j11]Omar Awile, Ferit Büyükkeçeci, Sylvain Reboux, Ivo F. Sbalzarini:
Fast neighbor lists for adaptive-resolution particle simulations. Comput. Phys. Commun. 183(5): 1073-1081 (2012) - [j10]Christian L. Müller, Ivo F. Sbalzarini:
Energy Landscapes of Atomic Clusters as Black Box Optimization Benchmarks. Evol. Comput. 20(4): 543-573 (2012) - [j9]Sylvain Reboux, Birte Schrader, Ivo F. Sbalzarini:
A self-organizing Lagrangian particle method for adaptive-resolution advection-diffusion simulations. J. Comput. Phys. 231(9): 3623-3646 (2012) - [j8]Birte Schrader, Sylvain Reboux, Ivo F. Sbalzarini:
Choosing the Best Kernel: Performance Models for Diffusion Operators in Particle Methods. SIAM J. Sci. Comput. 34(3) (2012) - [j7]Janick Cardinale, Grégory Paul, Ivo F. Sbalzarini:
Discrete Region Competition for Unknown Numbers of Connected Regions. IEEE Trans. Image Process. 21(8): 3531-3545 (2012) - [c13]Yuanhao Gong, Grégory Paul, Ivo F. Sbalzarini:
Coupled signed-distance functions for implicit surface reconstruction. ISBI 2012: 1000-1003 - 2011
- [j6]Jo A. Helmuth, Sylvain Reboux, Ivo F. Sbalzarini:
Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors. J. Comput. Sci. 2(4): 324-334 (2011) - [c12]Grégory Paul, Janick Cardinale, Ivo F. Sbalzarini:
An alternating split Bregman algorithm for multi-region segmentation. ACSCC 2011: 426-430 - [c11]Christian L. Müller, Ivo F. Sbalzarini:
Global Characterization of the CEC 2005 Fitness Landscapes Using Fitness-Distance Analysis. EvoApplications (1) 2011: 294-303 - [i1]Christian L. Müller, Rajesh Ramaswamy, Ivo F. Sbalzarini:
Global parameter identification of stochastic reaction networks from single trajectories. CoRR abs/1111.4785 (2011) - 2010
- [j5]Jo A. Helmuth, Grégory Paul, Ivo F. Sbalzarini:
Beyond co-localization: inferring spatial interactions between sub-cellular structures from microscopy images. BMC Bioinform. 11: 372 (2010) - [j4]Ivo F. Sbalzarini:
Abstractions and Middleware for Petascale Computing and Beyond. Int. J. Distributed Syst. Technol. 1(2): 40-56 (2010) - [j3]Birte Schrader, Sylvain Reboux, Ivo F. Sbalzarini:
Discretization correction of general integral PSE Operators for particle methods. J. Comput. Phys. 229(11): 4159-4182 (2010) - [j2]Omar Awile, Anita Krisko, Ivo F. Sbalzarini, Bojan Zagrovic:
Intrinsically Disordered Regions May Lower the Hydration Free Energy in Proteins: A Case Study of Nudix Hydrolase in the Bacterium Deinococcus radiodurans. PLoS Comput. Biol. 6(7) (2010) - [c10]Christian L. Müller, Ivo F. Sbalzarini:
Gaussian Adaptation as a unifying framework for continuous black-box optimization and adaptive Monte Carlo sampling. IEEE Congress on Evolutionary Computation 2010: 1-8 - [c9]Christian L. Müller, Ivo F. Sbalzarini:
Gaussian Adaptation Revisited - An Entropic View on Covariance Matrix Adaptation. EvoApplications (1) 2010: 432-441
2000 – 2009
- 2009
- [c8]Christian L. Müller, Benedikt Baumgartner, Ivo F. Sbalzarini:
Particle Swarm CMA Evolution Strategy for the optimization of multi-funnel landscapes. IEEE Congress on Evolutionary Computation 2009: 2685-2692 - [c7]Christian L. Müller, Benedikt Baumgartner, Georg Ofenbeck, Birte Schrader, Ivo F. Sbalzarini:
pCMALib: a parallel fortran 90 library for the evolution strategy with covariance matrix adaptation. GECCO 2009: 1411-1418 - [c6]Christian L. Müller, Ivo F. Sbalzarini:
A Tunable Real-world Multi-funnel Benchmark Problem for Evolutionary Optimization - And Why Parallel Island Models Might Remedy the Failure of CMA-ES on It. IJCCI 2009: 248-253 - [c5]Janick Cardinale, Alexander Rauch, Yves Barral, Gábor Székely, Ivo F. Sbalzarini:
Bayesian Image Analysis with On-Line Confidence Estimates and its Application to Microtubule Tracking. ISBI 2009: 1091-1094 - [c4]Jo A. Helmuth, Ivo F. Sbalzarini:
Deconvolving Active Contours for Fluorescence Microscopy Images. ISVC (1) 2009: 544-553 - 2006
- [j1]Ivo F. Sbalzarini, Jens H. Walther, Michael Bergdorf, Simone Elke Hieber, Evangelos M. Kotsalis, Petros Koumoutsakos:
PPM - A highly efficient parallel particle-mesh library for the simulation of continuum systems. J. Comput. Phys. 215(2): 566-588 (2006) - [c3]Ivo F. Sbalzarini, Jens H. Walther, B. Polasek, Philippe Chatelain, Michael Bergdorf, Simone Elke Hieber, Evangelos M. Kotsalis, Petros Koumoutsakos:
A Software Framework for the Portable Parallelization of Particle-Mesh Simulations. Euro-Par 2006: 730-739 - 2001
- [c2]Sibylle D. Müller, Ivo F. Sbalzarini, Jens H. Walther, Petros Koumoutsakos:
Evolution strategies for the optimization of microdevices. CEC 2001: 302-309 - [c1]Ivo F. Sbalzarini, Sibylle D. Müller, Petros Koumoutsakos:
Microchannel Optimization Using Multiobjective Evolution Strategies. EMO 2001: 516-530
Coauthor Index
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