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ORCIDZachary Baum
Zachary M. C. Baum
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2020 – today
- 2024
[c29]Kian Hashtrudi-Zaad, Tamas Ungi, Chris Yeung, Zachary Baum, Pavel-Dumitru Cernelev, Anthony N. Hage, Christopher Schlenger, Gabor Fichtinger:
Expert-guided optimization of ultrasound segmentation models for 3D spine imaging. CCECE 2024: 680-685- [c28]Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu:
Biomechanics-Informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. MICCAI (2) 2024: 564-574 - [i18]Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu:
Biomechanics-informed Non-rigid Medical Image Registration and its Inverse Material Property Estimation with Linear and Nonlinear Elasticity. CoRR abs/2407.03292 (2024) - 2023
- [j6]Zachary M. C. Baum
, Yipeng Hu, Dean C. Barratt:
Meta-Learning Initializations for Interactive Medical Image Registration. IEEE Trans. Medical Imaging 42(3): 823-833 (2023) - [c27]Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu:
Non-rigid Medical Image Registration using Physics-informed Neural Networks. IPMI 2023: 601-613 - [c26]Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed:
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. MLMI@MICCAI (1) 2023: 277-288 - [c25]Nina Montaña Brown, Shaheer U. Saeed, Ahmed Abdulaal, Thomas Dowrick, Yakup Kilic, Sophie Wilkinson, Jack Gao, Meghavi Mashar, Chloe He, Alkisti Stavropoulou, Emma Thomson, Zachary M. C. Baum, Simone Foti, Brian R. Davidson, Yipeng Hu, Matthew J. Clarkson:
SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery. NeurIPS 2023 - [i17]Zhe Min, Zachary M. C. Baum, Shaheer U. Saeed, Mark Emberton, Dean C. Barratt, Zeike A. Taylor, Yipeng Hu:
Non-rigid Medical Image Registration using Physics-informed Neural Networks. CoRR abs/2302.10343 (2023) - [i16]Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed:
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. CoRR abs/2308.11376 (2023) - 2022
- [j5]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Image quality assessment for machine learning tasks using meta-reinforcement learning. Medical Image Anal. 78: 102427 (2022) - [c24]Pierre Raillard, Lorenzo Cristoni, Andrew Walden, Roberto Lazzari, Thomas Pulimood, Louis Grandjean, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu, Zachary M. C. Baum:
Rapid Lung Ultrasound COVID-19 Severity Scoring with Resource-Efficient Deep Feature Extraction. ASMUS@MICCAI 2022: 3-12 - [c23]Zachary M. C. Baum, Tamas Ungi, Christopher Schlenger, Yipeng Hu, Dean C. Barratt:
Learning Generalized Non-rigid Multimodal Biomedical Image Registration from Generic Point Set Data. ASMUS@MICCAI 2022: 141-151 - [c22]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Meta-registration: Learning Test-Time Optimization for Single-Pair Image Registration. ASMUS@MICCAI 2022: 162-171 - [e1]Stephen R. Aylward, J. Alison Noble, Yipeng Hu, Su-Lin Lee, Zachary Baum, Zhe Min:
Simplifying Medical Ultrasound - Third International Workshop, ASMUS 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Proceedings. Lecture Notes in Computer Science 13565, Springer 2022, ISBN 978-3-031-16901-4 [contents] - [i15]Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu:
Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation. CoRR abs/2202.09798 (2022) - [i14]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Image quality assessment for machine learning tasks using meta-reinforcement learning. CoRR abs/2203.14258 (2022) - [i13]Zachary M. C. Baum, Tamas Ungi, Christopher Schlenger, Yipeng Hu, Dean C. Barratt:
Learning Generalized Non-Rigid Multimodal Biomedical Image Registration from Generic Point Set Data. CoRR abs/2207.10994 (2022) - [i12]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Meta-Registration: Learning Test-Time Optimization for Single-Pair Image Registration. CoRR abs/2207.10996 (2022) - [i11]Pierre Raillard, Lorenzo Cristoni, Andrew Walden, Roberto Lazzari, Thomas Pulimood, Louis Grandjean, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu, Zachary M. C. Baum:
Rapid Lung Ultrasound COVID-19 Severity Scoring with Resource-Efficient Deep Feature Extraction. CoRR abs/2207.10998 (2022) - [i10]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Meta-Learning Initializations for Interactive Medical Image Registration. CoRR abs/2210.15371 (2022) - 2021
- [j4]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Real-time multimodal image registration with partial intraoperative point-set data. Medical Image Anal. 74: 102231 (2021) - [c21]Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu:
Learning Image Quality Assessment by Reinforcing Task Amenable Data Selection. IPMI 2021: 755-766 - [c20]Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu:
Development and Evaluation of Intraoperative Ultrasound Segmentation with Negative Image Frames and Multiple Observer Labels. ASMUS@MICCAI 2021: 25-34 - [c19]Harry Mason, Lorenzo Cristoni, Andrew Walden, Roberto Lazzari, Thomas Pulimood, Louis Grandjean, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu, Zachary M. C. Baum:
Lung Ultrasound Segmentation and Adaptation Between COVID-19 and Community-Acquired Pneumonia. ASMUS@MICCAI 2021: 45-53 - [c18]Alexander Grimwood, João Ramalhinho, Zachary M. C. Baum, Nina Montaña Brown, Gavin J. Johnson, Yipeng Hu, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt, Ester Bonmati:
Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. ASMUS@MICCAI 2021: 169-178 - [c17]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Adaptable Image Quality Assessment Using Meta-Reinforcement Learning of Task Amenability. ASMUS@MICCAI 2021: 191-201 - [c16]Zachary M. C. Baum, Ester Bonmati, Lorenzo Cristoni, Andrew Walden, Ferran Prados, Baris Kanber, Dean C. Barratt, David J. Hawkes, Geoff J. M. Parker, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu:
Image quality assessment for closed-loop computer-assisted lung ultrasound. Image-Guided Procedures 2021 - [i9]Shaheer U. Saeed, Yunguan Fu, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Dean C. Barratt, Yipeng Hu:
Learning image quality assessment by reinforcing task amenable data selection. CoRR abs/2102.07615 (2021) - [i8]Harry Mason, Lorenzo Cristoni, Andrew Walden, Roberto Lazzari, Thomas Pulimood, Louis Grandjean, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu, Zachary M. C. Baum:
Lung Ultrasound Segmentation and Adaptation between COVID-19 and Community-Acquired Pneumonia. CoRR abs/2108.03138 (2021) - [i7]Liam F. Chalcroft, Jiongqi Qu, Sophie A. Martin, Iani J. M. B. Gayo, Giulio V. Minore, Imraj R. D. Singh, Shaheer U. Saeed, Qianye Yang, Zachary M. C. Baum, André Altmann, Yipeng Hu:
Development and evaluation of intraoperative ultrasound segmentation with negative image frames and multiple observer labels. CoRR abs/2108.04114 (2021) - [i6]Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu:
Adaptable image quality assessment using meta-reinforcement learning of task amenability. CoRR abs/2108.04359 (2021) - [i5]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Real-time multimodal image registration with partial intraoperative point-set data. CoRR abs/2109.05023 (2021) - 2020
- [j3]Zachary M. C. Baum, Andras Lasso, Sarah Ryan, Tamas Ungi, Emily Rae, Boris Zevin, Ron Levy, Gabor Fichtinger:
Augmented Reality Training Platform for Neurosurgical Burr Hole Localization. J. Medical Robotics Res. 4(3-4): 1942001:1-1942001:13 (2020) - [j2]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5(55): 2705 (2020) - [j1]Tamas Ungi, Thomas Hastings Greer, Kyle Sunderland, Victoria Wu, Zachary M. C. Baum, Christopher Schlenger, Matthew Oetgen, Kevin Cleary, Stephen R. Aylward, Gabor Fichtinger:
Automatic Spine Ultrasound Segmentation for Scoliosis Visualization and Measurement. IEEE Trans. Biomed. Eng. 67(11): 3234-3241 (2020) - [c15]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Multimodality Biomedical Image Registration Using Free Point Transformer Networks. ASMUS/PIPPI@MICCAI 2020: 116-125 - [d1]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. Zenodo, 2020
- [i4]Zachary M. C. Baum, Yipeng Hu, Dean C. Barratt:
Multimodality Biomedical Image Registration using Free Point Transformer Networks. CoRR abs/2008.01885 (2020) - [i3]Zachary M. C. Baum, Ester Bonmati, Lorenzo Cristoni, Andrew Walden, Ferran Prados, Baris Kanber, Dean C. Barratt, David J. Hawkes, Geoffrey J. M. Parker, Claudia A. M. Gandini Wheeler-Kingshott, Yipeng Hu:
Image quality assessment for closed-loop computer-assisted lung ultrasound. CoRR abs/2008.08840 (2020) - [i2]Nina Montaña Brown, Yunguan Fu, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alex Grimwood, Zhe Min, Ester Bonmati, Tom Vercauteren, Matthew J. Clarkson, Yipeng Hu:
Introduction to Medical Image Registration with DeepReg, Between Old and New. CoRR abs/2009.01924 (2020) - [i1]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. CoRR abs/2011.02580 (2020)
2010 – 2019
- 2019
- [c14]Julia Wiercigroch, Zachary Baum, Tamas Ungi, Jan Fritz, Gabor Fichtinger:
Validation of a low-cost adjustable, handheld needle guide for spine interventions. Image-Guided Procedures 2019: 109510L - [c13]Hillary Lia, Zachary Baum, Thomas Vaughan, Tamas Ungi, Thomas McGregor, Gabor Fichtinger:
Electromagnetically tracked partial nephrectomy navigation: demonstration of concept. Image-Guided Procedures 2019: 109512W - [c12]Sydney Perrin, Zachary Baum, Mark Asselin, Grace Underwood, Saleh Choueib, Hillary Lia, Tamas Ungi, Andras Lasso, Gabor Fichtinger:
Reproducibility of freehand calibrations for ultrasound-guided needle navigation. Image-Guided Procedures 2019: 109512B - [c11]Zachary Baum, Ben Church, Andras Lasso, Tamas Ungi, Christopher Schlenger, Daniel P. Borschneck, Parvin Mousavi, Gabor Fichtinger:
Step-wise identification of ultrasound-visible anatomical landmarks for 3D visualization of scoliotic spine. Image-Guided Procedures 2019: 1095129 - 2018
- [c10]Zachary Baum, Tamas Ungi, Andras Lasso, Ben Church, Christopher Schlenger, Gabor Fichtinger:
Visual aid for identifying vertebral landmarks in ultrasound. Image-Guided Procedures 2018: 105760Z - [c9]Csaba Pinter, Bryan Travers, Zachary Baum, Shahrokh Kamali, Tamas Ungi, Andras Lasso, Ben Church, Gabor Fichtinger:
Real-time transverse process detection in ultrasound. Image-Guided Procedures 2018: 105760Y - [c8]Rebecca Hisey, Tamas Ungi, Matthew S. Holden, Zachary Baum, Zsuzsanna Keri, Caitlin McCallum, Daniel W. Howes, Gabor Fichtinger:
Real-time workflow detection using webcam video for providing real-time feedback in central venous catheterization training. Image-Guided Procedures 2018: 1057620 - 2017
- [c7]Zachary Baum, Tamas Ungi, Andras Lasso, Gabor Fichtinger:
Usability of a real-time tracked augmented reality display system in musculoskeletal injections. Image-Guided Procedures 2017: 101352T - [c6]Vinyas Harish, Eden Bibic, Andras Lasso, Matthew S. Holden, Thomas Vaughan, Zachary Baum, Tamas Ungi, Gabor Fichtinger:
Monitoring electromagnetic tracking error using redundant sensors. Image-Guided Procedures 2017: 101352R - [c5]Rachael House, Andras Lasso, Vinyas Harish, Zachary Baum, Gabor Fichtinger:
Evaluation of the Intel RealSense SR300 camera for image-guided interventions and application in vertebral level localization. Image-Guided Procedures 2017: 101352Z - [c4]Anna Ilina, Andras Lasso, Matthew A. Jolley, Brittany Wohler, Alexander V. Nguyen, Adam B. Scanlan, Zachary Baum, Frank McGowan, Gabor Fichtinger:
Patient-specific pediatric silicone heart valve models based on 3D ultrasound. Image-Guided Procedures 2017: 1013516 - [c3]Grace Underwood, Tamas Ungi, Zachary Baum, Andras Lasso, Gernot Kronreif, Gabor Fichtinger:
Skull registration for prone patient position using tracked ultrasound. Image-Guided Procedures 2017: 1013522 - 2016
- [c2]Zachary Baum, Andras Lasso, Tamas Ungi, Gabor Fichtinger:
Real-time self-calibration of a tracked augmented reality display. Image-Guided Procedures 2016: 97860F - [c1]Vinyas Harish, Aidan Baksh, Tamas Ungi, Andras Lasso, Zachary Baum, Gabrielle Gauvin, Cecil Jay Engel, John F. Rudan, Gabor Fichtinger:
Measurement of electromagnetic tracking error in a navigated breast surgery setup. Image-Guided Procedures 2016: 97862K
Coauthor Index
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