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2020 – today
- 2025
[j7]Lifeng Yan, Zekun Yin, Tong Zhang, Fangjin Zhu, Xiaohui Duan, Bertil Schmidt, Weiguo Liu:
SWQC: Efficient sequencing data quality control on the next-generation sunway platform. Future Gener. Comput. Syst. 164: 107577 (2025)- 2024
- [j6]Haoran Lin, Lifeng Yan, Qixin Chang, Haitian Lu, Chenlin Li, Quanjie He, Zeyu Song, Xiaohui Duan
, Zekun Yin, Yuxuan Li, Zhao Liu, Wei Xue, Haohuan Fu, Lin Gan, Guangwen Yang, Weiguo Liu:
O2ath: an OpenMP offloading toolkit for the sunway heterogeneous manycore platform. CCF Trans. High Perform. Comput. 6(3): 274-286 (2024) - [c11]Mingkai Wang, Zekun Yin, Lifeng Yan, Yang Yang, Fangjin Zhu, Xiaohui Duan, Xin Li, Bertil Schmidt, Weiguo Liu:
RabbitTrim: Highly Optimized Trimming of Illumina Sequencing Data on Multi-core Platforms. ISBRA (2) 2024: 26-37 - [c10]Lifeng Yan, Zekun Yin, Jinjin Li, Yang Yang, Tong Zhang, Fangjin Zhu, Xiaohui Duan, Bertil Schmidt, Weiguo Liu:
RabbitSAlign: Accelerating Short-Read Alignment for CPU-GPU Heterogeneous Platforms. ISBRA (2) 2024: 83-94 - [i2]Haoran Lin, Xianzhi Yu, Kang Zhao, Lu Hou, Zongyuan Zhan, Stanislav Kamenev, Han Bao, Ting Hu, Mingkai Wang, Qixin Chang, Siyue Sui, Weihao Sun, Jiaxin Hu, Jun Yao, Zekun Yin, Cheng Qian, Ying Zhang, Yinfei Pan, Yu Yang, Weiguo Liu:
FastAttention: Extend FlashAttention2 to NPUs and Low-resource GPUs. CoRR abs/2410.16663 (2024) - 2023
- [j5]Xiaoming Xu, Zekun Yin, Lifeng Yan, Huiguang Yi, Hua Wang, Bertil Schmidt, Weiguo Liu:
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures. Bioinform. 39(10) (2023) - [j4]Hao Zhang, Honglei Song, Xiaoming Xu, Qixin Chang, Mingkai Wang, Yanjie Wei, Zekun Yin, Bertil Schmidt, Weiguo Liu:
RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2341-2348 (2023) - [c9]Borui Xu, Zeyi Wen, Lifeng Yan, Zhan Zhao, Zekun Yin, Weiguo Liu, Bingsheng He:
Leveraging Data Density and Sparsity for Efficient SVM Training on GPUs. ICDM 2023: 698-707 - [c8]Haoran Lin, Xinwei Qin, Shuang Qiu, Yi Sun, Zekun Yin, Weiguo Liu:
Ray-based Elastic Distributed Data Parallel Framework with Distributed Data Cache. IPDPS Workshops 2023: 809-817 - [c7]Wubing Wan, Lin Gan, Wenqiang Wang, Zekun Yin, Haodong Tian, Zhenguo Zhang, Yinuo Wang, Mengyuan Hua, Xiaohui Liu, Shengye Xiang, Zhongqiu He, Zijia Wang, Ping Gao, Xiaohui Duan, Weiguo Liu, Wei Xue, Haohuan Fu, Guangwen Yang, Xiaofei Chen, Zeyu Song, Yaojian Chen, Xin Liu, Wei Zhang:
69.7-PFlops Extreme Scale Earthquake Simulation with Crossing Multi-faults and Topography on Sunway. SC 2023: 10:1-10:15 - [i1]Haoran Lin, Lifeng Yan, Qixin Chang, Haitian Lu, Chenlin Li, Quanjie He, Zeyu Song, Xiaohui Duan, Zekun Yin, Yuxuan Li, Zhao Liu, Wei Xue, Haohuan Fu, Lin Gan, Guangwen Yang, Weiguo Liu:
O2ATH: An OpenMP Offloading Toolkit for the Sunway Heterogeneous Manycore Platform. CoRR abs/2309.04945 (2023) - 2022
- [j3]Hao Zhang, Qixin Chang, Zekun Yin, Xiaoming Xu, Yanjie Wei, Bertil Schmidt, Weiguo Liu:
RabbitV: fast detection of viruses and microorganisms in sequencing data on multi-core architectures. Bioinform. 38(10): 2932-2933 (2022) - [c6]Lifeng Yan, Zekun Yin, Hao Zhang, Zhan Zhao, Mingkai Wang, André Müller, Robin Kobus, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu:
RabbitQCPlus: More Efficient Quality Control for Sequencing Data. BIBM 2022: 619-626 - 2021
- [j2]Zekun Yin, Hao Zhang, Meiyang Liu, Wen Zhang, Honglei Song, Haidong Lan, Yanjie Wei, Beifang Niu, Bertil Schmidt, Weiguo Liu:
RabbitQC: high-speed scalable quality control for sequencing data. Bioinform. 37(4): 573-574 (2021) - [j1]Zekun Yin, Xiaoming Xu, Jinxiao Zhang, Yanjie Wei, Bertil Schmidt, Weiguo Liu:
RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures. Bioinform. 37(6): 873-875 (2021) - 2020
- [c5]Xiaoming Xu, Yuandong Chan, Kai Xu, Jikai Zhang, Xiaoning Wang, Zekun Yin, Weiguo Liu:
SLPal: Accelerating Long Sequence Alignment on Many-Core and Multi-Core Architectures. BIBM 2020: 2242-2249
2010 – 2019
- 2019
- [c4]Zekun Yin, Xiaoming Xu, Kaichao Fan, Ruilin Li, Weizhong Li, Weiguo Liu, Beifang Niu:
DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences. BIBM 2019: 2272-2279 - [c3]Zekun Yin, Tianyu Zhang, André Müller, Hui Liu, Yanjie Wei, Bertil Schmidt, Weiguo Liu:
Efficient Parallel Sort on AVX-512-Based Multi-Core and Many-Core Architectures. HPCC/SmartCity/DSS 2019: 168-176 - [c2]Zekun Yin, Hao Zhang, Kai Xu, Yuandong Chan, Shaoliang Peng, Xiaoning Wang, Bertil Schmidt, Weiguo Liu:
XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters. HPCC/SmartCity/DSS 2019: 1477-1483 - 2017
- [c1]Haohuan Fu, Conghui He, Bingwei Chen, Zekun Yin, Zhenguo Zhang, Wenqiang Zhang, Tingjian Zhang, Wei Xue, Weiguo Liu, Wanwang Yin, Guangwen Yang, Xiaofei Chen:
18.9-Pflops nonlinear earthquake simulation on Sunway TaihuLight: enabling depiction of 18-Hz and 8-meter scenarios. SC 2017: 2
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last updated on 2024-12-08 01:31 CET by the dblp team
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