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ORCIDDaniel C. Zielinski
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2020 – today
- 2024
[j7]Sizhe Qiu
, Xinlong Wan, Yueshan Liang, Cameron R. Lamoureux, Amir Akbari, Bernhard O. Palsson, Daniel C. Zielinski:
Inferred regulons are consistent with regulator binding sequences in E. coli. PLoS Comput. Biol. 20(1) (2024)- [j6]Anand V. Sastry, Yuan Yuan, Saugat Poudel, Kevin Rychel, Reo Yoo, Cameron R. Lamoureux, Gaoyuan Li, Joshua T. Burrows, Siddharth Chauhan, Zachary B. Haiman, Tahani Al Bulushi, Yara Seif, Bernhard O. Palsson, Daniel C. Zielinski:
iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia. PLoS Comput. Biol. 20(10): 1012546 (2024) - 2021
- [j5]Zachary B. Haiman, Daniel C. Zielinski, Yuko Koike, James T. Yurkovich, Bernhard O. Palsson:
MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics. PLoS Comput. Biol. 17(1) (2021)
2010 – 2019
- 2016
- [j4]Bin Du, Daniel C. Zielinski, Erol S. Kavvas, Andreas Dräger, Justin Tan, Zhen Zhang, Kayla E. Ruggiero, Garri A. Arzumanyan, Bernhard O. Palsson:
Evaluation of rate law approximations in bottom-up kinetic models of metabolism. BMC Syst. Biol. 10: 40 (2016) - 2015
- [b1]Daniel C. Zielinski:
Using metabolic network reconstructions to analyze complex data sets. University of California, San Diego, USA, 2015 - [j3]Andreas Dräger, Daniel C. Zielinski, Roland Keller, Matthias Rall, Johannes Eichner, Bernhard O. Palsson, Andreas Zell:
SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks. BMC Syst. Biol. 9: 68 (2015) - 2014
- [j2]Hojung Nam, Miguel Campodonico, Aarash Bordbar, Daniel R. Hyduke, Sangwoo Kim, Daniel C. Zielinski, Bernhard O. Palsson:
A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks. PLoS Comput. Biol. 10(9) (2014) - 2012
- [j1]Jan Schellenberger, Daniel C. Zielinski, Wing Choi, Sunthosh Madireddi, Vasiliy Portnoy, David A. Scott, Jennifer L. Reed, Andrei Osterman, Bernhard Ø. Palsson:
Predicting outcomes of steady-state 13C isotope tracing experiments using Monte Carlo sampling. BMC Syst. Biol. 6: 9 (2012)
Coauthor Index
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