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ORCIDOlivier Gandrillon
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2020 – today
- 2024
[j22]Matteo Bouvier, Souad Zreika, Elodie Vallin, Camille Fourneaux, Sandrine Gonin-Giraud, Arnaud Bonnaffoux, Olivier Gandrillon:
TopoDoE: a design of experiment strategy for selection and refinement in ensembles of executable gene regulatory networks. BMC Bioinform. 25(1): 245 (2024)- [j21]Maxime Estavoyer, Marion Dufeu, Grégoire Ranson, Sylvain Lefort, Thibault Voeltzel, Véronique Maguer-Satta, Olivier Gandrillon, Thomas Lepoutre:
Modeling relaxation experiments with a mechanistic model of gene expression. BMC Bioinform. 25(1): 270 (2024) - 2023
- [j20]Maxime Lepetit, Mirela Diana Ilie, Marie Chanal, Gerald Raverot, Philippe Bertolino, Christophe Arpin, Franck Picard, Olivier Gandrillon:
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data. Silico Biol. 15(1-2): 11-21 (2023) - [j19]Elias Ventre
, Ulysse Herbach, Thibault Espinasse, Gérard Benoit, Olivier Gandrillon:
One model fits all: Combining inference and simulation of gene regulatory networks. PLoS Comput. Biol. 19(3) (2023) - [i1]Anthony Ozier-Lafontaine, Camille Fourneaux, Ghislain Durif, Céline Vallot, Olivier Gandrillon, Sandrine Giraud, Bertrand Michel, Franck Picard:
Kernel-Based Testing for Single-Cell Differential Analysis. CoRR abs/2307.08509 (2023) - 2021
- [j18]Ronan Duchesne, Anissa Guillemin, Olivier Gandrillon, Fabien Crauste:
Practical identifiability in the frame of nonlinear mixed effects models: the example of the in vitro erythropoiesis. BMC Bioinform. 22(1): 478 (2021) - [j17]Chloe Audebert, Daphné Laubreton, Christophe Arpin, Olivier Gandrillon, Jacqueline Marvel, Fabien Crauste:
Modeling and characterization of inter-individual variability in CD8 T cell responses in mice. Silico Biol. 14(1-2): 13-39 (2021)
2010 – 2019
- 2019
- [j16]Arnaud Bonnaffoux, Ulysse Herbach, Angélique Richard, Anissa Guillemin, Sandrine Gonin-Giraud, Pierre-Alexis Gros, Olivier Gandrillon:
WASABI: a dynamic iterative framework for gene regulatory network inference. BMC Bioinform. 20(1): 220:1-220:19 (2019) - [j15]Ronan Duchesne, Anissa Guillemin, Fabien Crauste, Olivier Gandrillon:
Calibration, Selection and Identifiability Analysis of a Mathematical Model of the in vitro Erythropoiesis in Normal and Perturbed Contexts. Silico Biol. 13(1-2): 55-69 (2019) - 2018
- [j14]Nan Papili Gao, S. M. Minhaz Ud-Dean, Olivier Gandrillon, Rudiyanto Gunawan:
SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles. Bioinform. 34(2): 258-266 (2018) - [c6]Arnaud Bonnaffoux, Eddy Caron, Hadrien Croubois, Olivier Gandrillon:
A Cloud-aware Autonomous Workflow Engine and Its Application to Gene Regulatory Networks Inference. CLOSER 2018: 509-516 - 2016
- [j13]Xuefeng Gao, Christophe Arpin, Jacqueline Marvel, Sotiris A. Prokopiou, Olivier Gandrillon, Fabien Crauste:
IL-2 sensitivity and exogenous IL-2 concentration gradient tune the productive contact duration of CD8+ T cell-APC: a multiscale modeling study. BMC Syst. Biol. 10: 77 (2016) - 2015
- [j12]Peggy Cellier, Thierry Charnois, Marc Plantevit, Christophe Rigotti, Bruno Crémilleux, Olivier Gandrillon, Jirí Kléma, Jean-Luc Manguin:
Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts. J. Biomed. Semant. 6: 27 (2015) - 2014
- [j11]Sotiris A. Prokopiou, Loïc Barbarroux, Samuel Bernard, Julien Mafille, Yann Leverrier, Christophe Arpin, Jacqueline Marvel, Olivier Gandrillon, Fabien Crauste:
Multiscale Modeling of the Early CD8 T-Cell Immune Response in Lymph Nodes: An Integrative Study. Comput. 2(4): 159-181 (2014) - [j10]Pierre-Nicolas Mougel, Christophe Rigotti, Marc Plantevit, Olivier Gandrillon:
Finding maximal homogeneous clique sets. Knowl. Inf. Syst. 39(3): 579-608 (2014) - 2012
- [c5]Pierre-Nicolas Mougel, Christophe Rigotti, Olivier Gandrillon:
Finding Collections of k-Clique Percolated Components in Attributed Graphs. PAKDD (2) 2012: 181-192 - 2011
- [c4]Pierre-Nicolas Mougel, Marc Plantevit, Christophe Rigotti, Olivier Gandrillon, Jean-François Boulicaut:
Extraction sous contraintes d'ensembles de cliques homogènes. EGC 2011: 443-454 - 2010
- [j9]Antoine Coulon, Olivier Gandrillon, Guillaume Beslon:
On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter. BMC Syst. Biol. 4: 2 (2010) - [p1]Christophe Rigotti, Ieva Mitasiunaite, Jérémy Besson, Laurène Meyniel, Jean-François Boulicaut, Olivier Gandrillon:
Using a Solver Over the String Pattern Domain to Analyze Gene Promoter Sequences. Inductive Databases and Constraint-Based Data Mining 2010: 407-423
2000 – 2009
- 2009
- [j8]Ieva Mitasiunaite, Christophe Rigotti, Stéphane Schicklin, Laurène Meyniel, Jean-François Boulicaut, Olivier Gandrillon:
Extracting Signature Motifs from Promoter Sets of Differentially Expressed Genes. Silico Biol. 9(1-2): S17-S39 (2009) - [c3]Laurent Boyer, Olivier Gandrillon, Amaury Habrard, Mathilde Pellerin, Marc Sebban:
Learning Constrained Edit State Machines. ICTAI 2009: 734-741 - 2008
- [j7]Johan Leyritz, Stéphane Schicklin, Sylvain Blachon, Céline Keime, Céline Robardet, Jean-François Boulicaut, Jérémy Besson, Ruggero G. Pensa, Olivier Gandrillon:
SQUAT: A web tool to mine human, murine and avian SAGE data. BMC Bioinform. 9 (2008) - [j6]Jirí Kléma, Sylvain Blachon, Arnaud Soulet, Bruno Crémilleux, Olivier Gandrillon:
Constraint-Based Knowledge Discovery from SAGE Data. Silico Biol. 8(2): 157-175 (2008) - 2007
- [j5]Céline Keime, Marie Sémon, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon:
Unexpected observations after mapping LongSAGE tags to the human genome. BMC Bioinform. 8 (2007) - [j4]Sylvain Blachon, Ruggero G. Pensa, Jérémy Besson, Céline Robardet, Jean-François Boulicaut, Olivier Gandrillon:
Clustering Formal Concepts to Discover Biologically Relevant Knowledge from Gene Expression Data. Silico Biol. 7(4-5): 467-483 (2007) - [j3]Antoine Coulon, Hédi Soula, Olivier Mazet, Olivier Gandrillon, Guillaume Beslon:
Modélisation cellulaire pour l'émergence de structures multiprotéiques auto-organisées. Tech. Sci. Informatiques 26(1-2): 123-148 (2007) - 2006
- [c2]Jirí Kléma, Arnaud Soulet, Bruno Crémilleux, Sylvain Blachon, Olivier Gandrillon:
Mining Plausible Patterns from Genomic Data. CBMS 2006: 183-190 - 2005
- [j2]Hédi Soula, Céline Robardet, François Perrin, Sébastien Gripon, Guillaume Beslon, Olivier Gandrillon:
Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software. BMC Bioinform. 6: 228 (2005) - 2004
- [j1]Céline Keime, Francesca Damiola, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon:
Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. BMC Bioinform. 5: 143 (2004) - 2003
- [c1]François Rioult, Céline Robardet, Sylvain Blachon, Bruno Crémilleux, Olivier Gandrillon, Jean-François Boulicaut:
Mining Concepts from Large SAGE Gene Expression Matrices. KDID 2003: 107-118
Coauthor Index
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