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2020 – today
- 2024
[j75]Katerina C. Nastou
, Farrokh Mehryary, Tomoko Ohta, Jouni Luoma, Sampo Pyysalo, Lars Juhl Jensen:
RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature. Database J. Biol. Databases Curation 2024 (2024)- [j74]Mikaela Koutrouli, Katerina C. Nastou, Pau Piera Líndez, Robbin Bouwmeester, Simon Rasmussen, Lennart Martens, Lars Juhl Jensen:
FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. Bioinform. 40(2) (2024) - 2023
- [j73]Ana Hernández-Plaza, Damian Szklarczyk, Jorge Botas, Carlos P. Cantalapiedra, Joaquín Giner-Lamia, Daniel R. Mende, Rebecca Kirsch, Thomas Rattei, Ivica Letunic, Lars Juhl Jensen, Peer Bork, Christian von Mering, Jaime Huerta-Cepas:
eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic Acids Res. 51(D1): 389-394 (2023) - [j72]Damian Szklarczyk, Rebecca Kirsch, Mikaela Koutrouli, Katerina C. Nastou, Farrokh Mehryary, Radja Hachilif, Annika L. Gable, Tao Fang, Nadezhda T. Doncheva, Sampo Pyysalo, Peer Bork, Lars Juhl Jensen, Christian von Mering:
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. Nucleic Acids Res. 51(D1): 638-646 (2023) - [j71]Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea:
Pharos 2023: an integrated resource for the understudied human proteome. Nucleic Acids Res. 51(D1): 1405-1416 (2023) - 2022
- [j70]Dhouha Grissa, Alexander Junge, Tudor I. Oprea, Lars Juhl Jensen:
Diseases 2.0: a weekly updated database of disease-gene associations from text mining and data integration. Database J. Biol. Databases Curation 2022(2022) (2022) - [j69]Gergely Zahoránszky-Köhalmi, Vishal B. Siramshetty, Praveen Kumar, Manideep Gurumurthy, Busola Grillo, Biju Mathew, Dimitrios Metaxatos, Mark Backus, Tim Mierzwa, Reid Simon, Ivan Grishagin, Laura Brovold, Ewy A. Mathé, Matthew D. Hall, Samuel G. Michael, Alexander G. Godfrey, Jordi Mestres, Lars Juhl Jensen, Tudor I. Oprea:
A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research. J. Chem. Inf. Model. 62(3): 718-729 (2022) - [j68]Marie Locard-Paulet, Oana Palasca, Lars Juhl Jensen:
Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies. PLoS Comput. Biol. 18(10): 1010604 (2022) - 2021
- [j67]Jeremy J. Yang, Dhouha Grissa, Christophe G. Lambert, Cristian Bologa, Stephen L. Mathias, Anna Waller, David J. Wild, Lars Juhl Jensen, Tudor I. Oprea:
TIGA: target illumination GWAS analytics. Bioinform. 37(21): 3865-3873 (2021) - [j66]Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea:
TCRD and Pharos 2021: mining the human proteome for disease biology. Nucleic Acids Res. 49(Database-Issue): D1334-D1346 (2021) - [j65]Damian Szklarczyk, Annika L. Gable, Katerina C. Nastou, David Lyon, Rebecca Kirsch, Sampo Pyysalo, Nadezhda T. Doncheva, Marc Legeay, Tao Fang, Peer Bork, Lars Juhl Jensen, Christian von Mering:
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic Acids Res. 49(Database-Issue): D605-D612 (2021) - 2020
- [j64]Alexander Junge, Lars Juhl Jensen:
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision. Bioinform. 36(1): 264-271 (2020) - [j63]Dhouha Grissa, Ditlev Nytoft Rasmussen, Aleksander Krag, Søren Brunak, Lars Juhl Jensen:
Alcoholic liver disease: A registry view on comorbidities and disease prediction. PLoS Comput. Biol. 16(9) (2020) - [c7]Dhouha Grissa, Ditlev Nytoft Rasmussen, Aleksander Krag, Søren Brunak, Lars Juhl Jensen:
Using National Electronic Health Care Registries to Analyse and Predict Alcoholic Liver Disease. EGC 2020: 389-390 - [i1]Marc Legeay, Nadezhda T. Doncheva, John H. Morris, Lars Juhl Jensen:
Visualize omics data on networks with Omics Visualizer, a Cytoscape App. F1000Research 9: 157 (2020)
2010 – 2019
- 2019
- [j62]Xiaoyong Pan, Lars Juhl Jensen, Jan Gorodkin:
Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles. Bioinform. 35(9): 1494-1502 (2019) - [j61]Sune Pletscher-Frankild, Lars Juhl Jensen:
Design, implementation, and operation of a rapid, robust named entity recognition web service. J. Cheminformatics 11(1): 19:1-19:6 (2019) - [j60]Jaime Huerta-Cepas, Damian Szklarczyk, Davide Heller, Ana Hernández-Plaza, Sofia K. Forslund, Helen Cook, Daniel R. Mende, Ivica Letunic, Thomas Rattei, Lars Juhl Jensen, Christian von Mering, Peer Bork:
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Res. 47(Database-Issue): D309-D314 (2019) - [j59]Damian Szklarczyk, Annika L. Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T. Doncheva, John H. Morris, Peer Bork, Lars Juhl Jensen, Christian von Mering:
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 47(Database-Issue): D607-D613 (2019) - [j58]Somnath Tagore, Alessandro Gorohovski, Lars Juhl Jensen, Milana Frenkel-Morgenstern:
ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins. PLoS Comput. Biol. 15(8) (2019) - 2018
- [j57]Oana Palasca, Alberto Santos, Christian Stolte, Jan Gorodkin, Lars Juhl Jensen:
TISSUES 2.0: an integrative web resource on mammalian tissue expression. Database J. Biol. Databases Curation 2018: bay003 (2018) - [j56]Oana Palasca, Alberto Santos, Christian Stolte, Jan Gorodkin, Lars Juhl Jensen:
TISSUES 2.0: an integrative web resource on mammalian tissue expression. Database J. Biol. Databases Curation 2018: bay028 (2018) - [j55]Juan Miguel Cejuela, Shrikant Vinchurkar, Tatyana Goldberg, Madhukar Sollepura Prabhu Shankar, Ashish Baghudana, Aleksandar Bojchevski, Carsten Uhlig, André Ofner, Pandu Raharja-Liu, Lars Juhl Jensen, Burkhard Rost:
LocText: relation extraction of protein localizations to assist database curation. BMC Bioinform. 19(1): 15:1-15:11 (2018) - [j54]Francesco Russo, Sebastiano Di Bella, Federica Vannini, Gabriele Berti, Flavia Scoyni, Helen Cook, Alberto Santos, Giovanni Nigita, Vincenzo Bonnici, Alessandro Laganà, Filippo Geraci, Alfredo Pulvirenti, Rosalba Giugno, Federico De Masi, Kirstine Belling, Lars Juhl Jensen, Søren Brunak, Marco Pellegrini, Alfredo Ferro:
miRandola 2017: a curated knowledge base of non-invasive biomarkers. Nucleic Acids Res. 46(Database-Issue): D354-D359 (2018) - [j53]David Westergaard, Hans Henrik Stærfeldt, Christian Tønsberg, Lars Juhl Jensen, Søren Brunak:
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. PLoS Comput. Biol. 14(2) (2018) - 2017
- [j52]Alexander Junge, Jan C. Refsgaard, Christian Garde, Xiaoyong Pan, Alberto Santos, Ferhat Alkan, Christian Anthon, Christian von Mering, Christopher T. Workman, Lars Juhl Jensen, Jan Gorodkin:
RAIN: RNA-protein Association and Interaction Networks. Database J. Biol. Databases Curation 2017: baw167 (2017) - [j51]Daniel Cannon, Jeremy J. Yang, Stephen L. Mathias, Oleg Ursu, Subramani Mani, Anna Waller, Stephan C. Schürer, Lars Juhl Jensen, Larry A. Sklar, Cristian Bologa, Tudor I. Oprea:
TIN-X: target importance and novelty explorer. Bioinform. 33(16): 2601-2603 (2017) - [j50]Yu Lin, Saurabh Mehta, Hande Küçük-McGinty, John Paul Turner, Dusica Vidovic, Michele Forlin, Amar Koleti, Dac-Trung Nguyen, Lars Juhl Jensen, Rajarshi Guha, Stephen L. Mathias, Oleg Ursu, Vasileios Stathias, Jianbin Duan, Nooshin Nabizadeh, Caty Chung, Christopher Mader, Ubbo Visser, Jeremy J. Yang, Cristian Bologa, Tudor I. Oprea, Stephan C. Schürer:
Drug target ontology to classify and integrate drug discovery data. J. Biomed. Semant. 8(1): 50:1-50:16 (2017) - [j49]Damian Szklarczyk, John H. Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T. Doncheva, Alexander Roth, Peer Bork, Lars Juhl Jensen, Christian von Mering:
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res. 45(Database-Issue): D362-D368 (2017) - [j48]Dac-Trung Nguyen, Stephen L. Mathias, Cristian Bologa, Søren Brunak, Nicolas F. Fernandez, Anna Gaulton, Anne Hersey, Jayme Holmes, Lars Juhl Jensen, Anneli Karlsson, Guixia Liu, Avi Ma'ayan, Geetha Mandava, Subramani Mani, Saurabh Mehta, John P. Overington, Juhee Patel, Andrew D. Rouillard, Stephan C. Schürer, Timothy Sheils, Anton Simeonov, Larry A. Sklar, Noel Southall, Oleg Ursu, Dusica Vidovic, Anna Waller, Jeremy J. Yang, Ajit Jadhav, Tudor I. Oprea, Rajarshi Guha:
Pharos: Collating protein information to shed light on the druggable genome. Nucleic Acids Res. 45(Database-Issue): D995-D1002 (2017) - [c6]Helen Cook, Rudolfs Berzins, Cristina Leal Rodriguez, Juan Miguel Cejuela, Lars Juhl Jensen:
Creation and evaluation of a dictionary-based tagger for virus species and proteins. BioNLP 2017: 91-98 - 2016
- [j47]Evangelos Pafilis, Pier Luigi Buttigieg, Barbra Ferrell, Emiliano Pereira, Julia Schnetzer, Christos Arvanitidis, Lars Juhl Jensen:
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation. Database J. Biol. Databases Curation 2016 (2016) - [j46]Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi:
Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016) - [j45]Andrea Franceschini, Jianyi Lin, Christian von Mering, Lars Juhl Jensen:
SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles. Bioinform. 32(7): 1085-1087 (2016) - [j44]Jaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, Helen Cook, Davide Heller, Mathias C. Walter, Thomas Rattei, Daniel R. Mende, Shinichi Sunagawa, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork:
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44(Database-Issue): 286-293 (2016) - [j43]Damian Szklarczyk, Alberto Santos, Christian von Mering, Lars Juhl Jensen, Peer Bork, Michael Kuhn:
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. Nucleic Acids Res. 44(Database-Issue): 380-384 (2016) - [j42]Michael Kuhn, Ivica Letunic, Lars Juhl Jensen, Peer Bork:
The SIDER database of drugs and side effects. Nucleic Acids Res. 44(Database-Issue): 1075-1079 (2016) - [c5]Helen Cook, Evangelos Pafilis, Lars Juhl Jensen:
A dictionary- and rule-based system for identification of bacteria and habitats in text. BioNLP (Shared Task) 2016: 50-55 - [c4]Lars Juhl Jensen:
One Tagger, Many Uses: Illustrating the Power of Ontologies in Dictionary-based Named Entity Recognition. ICBO/BioCreative 2016 - 2015
- [j41]Evangelos Pafilis, Sune Pletscher-Frankild, Julia Schnetzer, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Katerina Vasileiadou, Patrick Leary, Jennifer Hammock, Katja Schulz, Cynthia Sims Parr, Christos Arvanitidis, Lars Juhl Jensen:
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life. Bioinform. 31(11): 1872-1874 (2015) - [j40]Damian Szklarczyk, Andrea Franceschini, Stefan Wyder, Kristoffer Forslund, Davide Heller, Jaime Huerta-Cepas, Milan Simonovic, Alexander Roth, Alberto Santos, Kalliopi Tsafou, Michael Kuhn, Peer Bork, Lars Juhl Jensen, Christian von Mering:
STRING v10: protein-protein interaction networks, integrated over the tree of life. Nucleic Acids Res. 43(Database-Issue): 447-452 (2015) - [j39]Alberto Santos, Rasmus Wernersson, Lars Juhl Jensen:
Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. Nucleic Acids Res. 43(Database-Issue): 1140-1144 (2015) - [c3]Sampo Pyysalo, Jorge Campos, Juan Miguel Cejuela, Filip Ginter, Kai Hakala, Chen Li, Pontus Stenetorp, Lars Juhl Jensen:
Sharing annotations better: RESTful Open Annotation. ACL (System Demonstrations) 2015: 91-96 - 2014
- [j38]Janos X. Binder, Sune Pletscher-Frankild, Kalliopi Tsafou, Christian Stolte, Seán I. O'Donoghue, Reinhard Schneider, Lars Juhl Jensen:
COMPARTMENTS: unification and visualization of protein subcellular localization evidence. Database J. Biol. Databases Curation 2014 (2014) - [j37]Søren Mørk, Sune Pletscher-Frankild, Albert Pallejà Caro, Jan Gorodkin, Lars Juhl Jensen:
Protein-driven inference of miRNA-disease associations. Bioinform. 30(3): 392-397 (2014) - [j36]Sean Powell, Kristoffer Forslund, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Jaime Huerta-Cepas, Toni Gabaldón, Thomas Rattei, Christopher J. Creevey, Michael Kuhn, Lars Juhl Jensen, Christian von Mering, Peer Bork:
eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Res. 42(Database-Issue): 231-239 (2014) - [j35]Michael Kuhn, Damian Szklarczyk, Sune Pletscher-Frankild, Thomas H. Blicher, Christian von Mering, Lars Juhl Jensen, Peer Bork:
STITCH 4: integration of protein-chemical interactions with user data. Nucleic Acids Res. 42(Database-Issue): 401-407 (2014) - 2013
- [j34]Christian Theil Have, Lars Juhl Jensen:
Are graph databases ready for bioinformatics? Bioinform. 29(24): 3107-3108 (2013) - [j33]Robert Eriksson, Peter Bjødstrup Jensen, Sune Frankild, Lars Juhl Jensen, Søren Brunak:
Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text. J. Am. Medical Informatics Assoc. 20(5): 947-953 (2013) - [j32]Andrea Franceschini, Damian Szklarczyk, Sune Frankild, Michael Kuhn, Milan Simonovic, Alexander Roth, Jianyi Lin, Pablo Minguez, Peer Bork, Christian von Mering, Lars Juhl Jensen:
STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 41(Database-Issue): 808-815 (2013) - [c2]Evangelos Pafilis, Georgios A. Pavlopoulos, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis, Lars Juhl Jensen, Reinhard Schneider, Ioannis Iliopoulos:
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. BIBE 2013: 1-4 - 2012
- [j31]Larry Croft, Damian Szklarczyk, Lars Juhl Jensen, Jan Gorodkin:
Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs. BMC Syst. Biol. 6: 90 (2012) - [j30]Sean Powell, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Michael Kuhn, Jean Muller, Roland Arnold, Thomas Rattei, Ivica Letunic, Tobias Doerks, Lars Juhl Jensen, Christian von Mering, Peer Bork:
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges. Nucleic Acids Res. 40(Database-Issue): 284-289 (2012) - [j29]Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, Christian von Mering, Lars Juhl Jensen, Peer Bork:
STITCH 3: zooming in on protein-chemical interactions. Nucleic Acids Res. 40(Database-Issue): 876-880 (2012) - [j28]Albert Pallejà, Heiko Horn, Sabrina Eliasson, Lars Juhl Jensen:
DistiLD Database: diseases and traits in linkage disequilibrium blocks. Nucleic Acids Res. 40(Database-Issue): 1036-1040 (2012) - 2011
- [j27]Lars Juhl Jensen, Alex Bateman:
The rise and fall of supervised machine learning techniques. Bioinform. 27(24): 3331-3332 (2011) - [j26]Holger Dinkel, Claudia Chica, Allegra Via, Cathryn M. Gould, Lars Juhl Jensen, Toby J. Gibson, Francesca Diella:
Phospho.ELM: a database of phosphorylation sites - update 2011. Nucleic Acids Res. 39(Database-Issue): 261-267 (2011) - [j25]Damian Szklarczyk, Andrea Franceschini, Michael Kuhn, Milan Simonovic, Alexander Roth, Pablo Minguez, Tobias Doerks, Manuel Stark, Jean Muller, Peer Bork, Lars Juhl Jensen, Christian von Mering:
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res. 39(Database-Issue): 561-568 (2011) - [j24]Francisco S. Roque, Peter Bjødstrup Jensen, Henriette Schmock, Marlene Dalgaard, Massimo Andreatta, Thomas Folkmann Hansen, Karen Søeby, Søren Bredkjær, Anders Juul, Thomas Werge, Lars Juhl Jensen, Søren Brunak:
Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts. PLoS Comput. Biol. 7(8) (2011) - [j23]Giovanni Marco Dall'Olio, Jacopo Marino, Michael Schubert, Kevin L. Keys, Melanie I. Stefan, Colin S. Gillespie, Pierre Poulain, Khader Shameer, Robert Sugar, Brandon M. Invergo, Lars Juhl Jensen, Jaume Bertranpetit, Hafid Laayouni:
Ten Simple Rules for Getting Help from Online Scientific Communities. PLoS Comput. Biol. 7(9) (2011) - [j22]Laurence D. Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall'Olio, Daniel C. Swan, Lars Juhl Jensen, Simon J. Cockell, Brent S. Pedersen, Mary E. Mangan, Christopher A. Miller, István Albert:
BioStar: An Online Question & Answer Resource for the Bioinformatics Community. PLoS Comput. Biol. 7(10) (2011) - 2010
- [j21]Jean Muller, Damian Szklarczyk, Philippe Julien, Ivica Letunic, Alexander Roth, Michael Kuhn, Sean Powell, Christian von Mering, Tobias Doerks, Lars Juhl Jensen, Peer Bork:
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. Nucleic Acids Res. 38(Database-Issue): 190-195 (2010) - [j20]Michael Kuhn, Damian Szklarczyk, Andrea Franceschini, Monica Campillos, Christian von Mering, Lars Juhl Jensen, Andreas Beyer, Peer Bork:
STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Res. 38(Database-Issue): 552-556 (2010) - [j19]Nicholas Paul Gauthier, Lars Juhl Jensen, Rasmus Wernersson, Søren Brunak, Thomas Skøt Jensen:
Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results. Nucleic Acids Res. 38(Database-Issue): 699-702 (2010) - [j18]Murat Iskar, Monica Campillos, Michael Kuhn, Lars Juhl Jensen, Vera van Noort, Peer Bork:
Drug-Induced Regulation of Target Expression. PLoS Comput. Biol. 6(9) (2010) - [j17]Seán I. O'Donoghue, Heiko Horn, Evangelos Pafilis, Sven Haag, Michael Kuhn, Venkata P. Satagopam, Reinhard Schneider, Lars Juhl Jensen:
Reflect: A practical approach to web semantics. J. Web Semant. 8(2-3): 182-189 (2010)
2000 – 2009
- 2009
- [j16]Lars Juhl Jensen, Michael Kuhn, Manuel Stark, Samuel Chaffron, Christopher J. Creevey, Jean Muller, Tobias Doerks, Philippe Julien, Alexander Roth, Milan Simonovic, Peer Bork, Christian von Mering:
STRING 8 - a global view on proteins and their functional interactions in 630 organisms. Nucleic Acids Res. 37(Database-Issue): 412-416 (2009) - [j15]Neil F. W. Saunders, Pedro Beltrão, Lars Juhl Jensen, Daniel Jurczak, Roland Krause, Michael Kuhn, Shirley Wu:
Microblogging the ISMB: A New Approach to Conference Reporting. PLoS Comput. Biol. 5(1) (2009) - 2008
- [j14]Lars Juhl Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork:
eggNOG: automated construction and annotation of orthologous groups of genes. Nucleic Acids Res. 36(Database-Issue): 250-254 (2008) - [j13]Michael Kuhn, Christian von Mering, Monica Campillos, Lars Juhl Jensen, Peer Bork:
STITCH: interaction networks of chemicals and proteins. Nucleic Acids Res. 36(Database-Issue): 684-688 (2008) - [j12]Rune Linding, Lars Juhl Jensen, Adrian Pasculescu, Marina Olhovsky, Karen Colwill, Peer Bork, Michael B. Yaffe, Tony Pawson:
NetworKIN: a resource for exploring cellular phosphorylation networks. Nucleic Acids Res. 36(Database-Issue): 695-699 (2008) - [j11]Nicholas Paul Gauthier, Malene Erup Larsen, Rasmus Wernersson, Ulrik de Lichtenberg, Lars Juhl Jensen, Søren Brunak, Thomas Skøt Jensen:
Cyclebase.org - a comprehensive multi-organism online database of cell-cycle experiments. Nucleic Acids Res. 36(Database-Issue): 854-859 (2008) - [j10]Stefan Günther, Michael Kuhn, Mathias Dunkel, Monica Campillos, Christian Senger, Evangelia Petsalaki, Jessica Ahmed, Eduardo Garcia Urdiales, Andreas Gewiess, Lars Juhl Jensen, Reinhard Schneider, Roman Skoblo, Robert B. Russell, Philip E. Bourne, Peer Bork, Robert Preissner:
SuperTarget and Matador: resources for exploring drug-target relationships. Nucleic Acids Res. 36(Database-Issue): 919-922 (2008) - 2007
- [j9]Christian von Mering, Lars Juhl Jensen, Michael Kuhn, Samuel Chaffron, Tobias Doerks, Beate Krüger, Berend Snel, Peer Bork:
STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Res. 35(Database-Issue): 358-362 (2007) - 2006
- [j8]Jasmin Saric, Lars Juhl Jensen, Rossitza Ouzounova, Isabel Rojas, Peer Bork:
Extraction of regulatory gene/protein networks from Medline. Bioinform. 22(6): 645-650 (2006) - 2005
- [j7]Ulrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas Skøt Jensen, Peer Bork, Søren Brunak:
Comparison of computational methods for the identification of cell cycle-regulated genes. Bioinform. 21(7): 1164-1171 (2005) - [j6]Christian von Mering, Lars Juhl Jensen, Berend Snel, Sean D. Hooper, Markus Krupp, Mathilde Foglierini, Nelly Jouffre, Martijn A. Huynen, Peer Bork:
STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res. 33(Database-Issue): 433-437 (2005) - [j5]Parantu K. Shah, Lars Juhl Jensen, Stéphanie Boué, Peer Bork:
Extraction of Transcript Diversity from Scientific Literature. PLoS Comput. Biol. 1(1) (2005) - 2004
- [j4]Jasmin Saric, Lars Juhl Jensen, Isabel Rojas:
Large-scale extraction of gene regulation for model organisms in an ontological context. Silico Biol. 5(1): 21-32 (2004) - [j3]Lars Juhl Jensen, Julien Lagarde, Christian von Mering, Peer Bork:
ArrayProspector: a web resource of functional associations inferred from microarray expression data. Nucleic Acids Res. 32(Web-Server-Issue): 445-448 (2004) - [c1]Jasmin Saric, Lars Juhl Jensen, Peer Bork, Rossitza Ouzounova, Isabel Rojas:
Extracting Regulatory Gene Expression Networks From Pubmed. ACL 2004: 191-198 - 2003
- [j2]Lars Juhl Jensen, Ramneek Gupta, Hans Henrik Stærfeldt, Søren Brunak:
Prediction of human protein function according to Gene Ontology categories. Bioinform. 19(5): 635-642 (2003) - 2000
- [j1]Lars Juhl Jensen, Steen Knudsen:
Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation. Bioinform. 16(4): 326-333 (2000)
Coauthor Index
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Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
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OpenAlex data
Load additional information about publications from 
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last updated on 2024-11-07 20:28 CET by the dblp team
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