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ORCIDSource Code for Biology and Medicine, Volume 7
Volume 7, 2012
- Adam Hunter, Andrew B. Macgregor, Tamás O. Szabó, Crispin A. Wellington, Matthew I. Bellgard
:
Yabi: An online research environment for grid, high performance and cloud computing. 1 - Cameron Neylon, Jan Aerts, C. Titus Brown, Simon J. Coles, Les Hatton, Daniel Lemire, K. Jarrod Millman, Peter Murray-Rust, Fernando Pérez, Neil F. W. Saunders, Nigam Shah, Arfon M. Smith, Gaël Varoquaux, Egon L. Willighagen:
Changing computational research. The challenges ahead. 2 - Manuel Corpas, Segun A. Fatumo, Reinhard Schneider:
How Not to Be a Bioinformatician. 3 - Michael D. Barton, Hazel A. Barton:
Scaffolder - software for manual genome scaffolding. 4 - Ralf W. Grosse-Kunstleve, Thomas C. Terwilliger, Nicholas K. Sauter, Paul D. Adams:
Automatic Fortran to C++ conversion with FABLE. 5 - Ricardo Ramirez-Gonzalez, Raoul Jean Pierre Bonnal, Mario Cáccamo, Daniel MacLean:
Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments. 6 - Cartic Ramakrishnan, Abhishek Patnia, Eduard H. Hovy, Gully A. P. C. Burns:
Layout-aware text extraction from full-text PDF of scientific articles. 7 - Daniel Jaschob, Michael Riffle:
JobCenter: an open source, cross-platform, and distributed job queue management system optimized for scalability and versatility. 8 - Kentaro Inoue, Kazuhiro Maeda, Yuki Kato, Shinpei Tonami, Shogo Takagi, Hiroyuki Kurata:
CADLIVE optimizer: web-based parameter estimation for dynamic models. 9 - Bhaskar Dutta, Anders Wallqvist, Jaques Reifman:
PathNet: A tool for pathway analysis using topological information. 10 - Florencio Rusty B. Punzalan, Yoshiharu Yamashita, Naoki Soejima, Masanari Kawabata, Takao Shimayoshi, Hiroaki Kuwabara, Yoshitoshi Kunieda, Akira Amano:
A CellML simulation compiler and code generator using ODE solving schemes. 11 - Martin Grabner, Kurt Varmuza, Matthias Dehmer:
RMol: A Toolset for Transforming SD/Molfile structure information into R Objects. 12 - Alexander V. Tyakht, Anna S. Popenko, Maxim S. Belenikin, Ilya A. Altukhov, Alexander V. Pavlenko, Elena S. Kostryukova, Oksana V. Selezneva, Andrei K. Larin, Irina Y. Karpova, Dmitry G. Alexeev:
MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads. 13
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