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ORCIDHISB 2012: La Jolla, CA, USA
- 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology, HISB 2012, La Jolla, CA, USA, September 27-28, 2012. IEEE Computer Society 2012, ISBN 978-1-4673-4803-4
Oral Presentations
- Dimitrios Markonis, Roger Schaer, Ivan Eggel, Henning Müller
, Adrien Depeursinge:
Using MapReduce for Large-Scale Medical Image Analysis. 1 - Michael G. Kahn, Lisa M. Schilling, Bethany M. Kwan, Aidan Bunting, Chris Uhrich, Colleen Singleton:
Preparing Electronic Health Records Data for Comparative Effectiveness Studies. 2 - Myung-kyung Suh, Jonathan Woodbridge, Tannaz Moin, Mars Lan, Nabil Alshurafa, Lauren Samy, Bobak Mortazavi, Hassan Ghasemzadeh, Alex A. T. Bui, Sheila Ahmadi, Majid Sarrafzadeh:
Dynamic Task Optimization in Remote Diabetes Monitoring Systems. 3-11 - Kavishwar B. Wagholikar, Sunghwan Sohn, Stephen T. Wu, Vinod Kaggal, Sheila Buehler, Robert A. Greenes, Tsung-Teh Wu, David W. Larson, Hongfang Liu, Rajeev Chaudhry, Lisa Boardman:
Clinical Decision Support for Colonoscopy Surveillance Using Natural Language Processing. 12-21 - Vijay Garla, Cynthia Brandt:
Knowledge-Based Biomedical Word Sense Disambiguation: An Evaluation and Application to Clinical Document Classification. 22 - Jonathan Woodbridge, Bobak Mortazavi, Majid Sarrafzadeh, Alex A. T. Bui:
Aggregated Indexing of Biomedical Time Series Data. 23-30 - Gyemin Lee, Hitinder S. Gurm, Zeeshan Syed:
Predicting Complications of Percutaneous Coronary Intervention Using a Novel Support Vector Method. 31 - Louise Deléger, Holly Brodzinski, Haijun Zhai, Qi Li, Todd Lingren, Eric S. Kirkendall, Evaline Alessandrini, Imre Solti:
Using Natural Language Processing and the Electronic Health Record for Appendicitis Risk Stratification. 32 - Anni Coden, Daniel Gruhl, Neal Lewis, Michael A. Tanenblatt, Joe Terdiman:
SPOT the Drug! An Unsupervised Pattern Matching Method to Extract Drug Names from Very Large Clinical Corpora. 33-39 - Alexander Hsieh, Son Doan, Michael Conway, Ko-Wei Lin, Hyeoneui Kim:
Demographics Identification: Variable Extraction Resource (DIVER). 40-49 - Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
An Interactive Image Retrieval Framework for Biomedical Articles Based on Visual Region-of- Interest (ROI) Identification and Classification. 50 - María Adela Grando, Aziz A. Boxwala, Richard Schwab, Neda Alipanah:
Ontological Approach for the Management of Informed Consent Permissions. 51-60 - Petra Stepanowsky, Jihoon Kim, Lucila Ohno-Machado:
A Robust Feature Selection Method for Novel Pre-microRNA Identification Using a Combination of Nucleotide-Structure Triplets. 61 - Son Doan, Lucila Ohno-Machado, Nigel Collier:
Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses. 62-71 - Siddhartha Jonnalagadda, Guilherme Del Fiol, Richard Medlin, Charlene R. Weir, Marcelo Fiszman, Javed Mostafa, Hongfang Liu:
Automatically Extracting Sentences from Medline Citations to Support Clinicians' Information Needs. 72 - Dhundy Bastola, Scott McGrath, Sanjukta Bhowmick, Ishwor Thapa:
A Comparison of Computational Approaches in the Molecular Identification of Pathogenic Organisms. 73 - Thankam Thyvalikakath, Michael P. Dziabiak, Raymond Johnson, Miguel H. Torres-Urquidy, Jonathan Yabes, Titus Schleyer:
Designing Clinical Data Presentation in Electronic Dental Records Using Cognitive Task Analysis Methods. 74 - Benjamin Xueqi Guan, Bir Bhanu, Prudence Talbot, Sabrina Lin:
Automated Human Embryonic Stem Cell Detection. 75-82 - Jiao Li, Zhiyong Lu:
A Network Approach for Computational Drug Repositioning. 83 - Qi Li, Haijun Zhai, Louise Deléger, Todd Lingren, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Linking Medications and Their Attributes in Clinical Notes and Clinical Trial Announcements for Information Extraction: A Sequence Labeling Approach. 84 - Vishal N. Patel, David C. Kaelber:
Azathioprine-Induced Comorbidity Network Reveals Patterns and Predictors of Nephrotoxicity and Neutrophilia. 85 - Gabriel Humpire-Mamani, Agma Juci Machado Traina, Caetano Traina Jr.:
FSCoMS: Feature Selection of Medical Images Based on Compactness Measure from Scatterplots. 86-95 - Juan Anna Wu, William Hsu, Alex A. T. Bui:
An Approach for Incorporating Context in Building Probabilistic Predictive Models. 96-105 - Haijun Zhai, Todd Lingren, Louise Deléger, Qi Li, Megan Kaiser, Laura Stoutenborough, Imre Solti:
Cheap, Fast, and Good Enough for the Non-biomedical Domain but is It Usable for Clinical Natural Language Processing? Evaluating Crowdsourcing for Clinical Trial Announcement Named Entity Annotations. 106 - Yang Chen, Xiaofeng Ren, Guo-Qiang Zhang, Rong Xu:
Ontology-Guided Approach to Retrieving Disease Manifestation Images for Health Image Base Construction. 107 - Todd Lingren, Louise Deléger, Katalin Molnár, Haijun Zhai, Jareen Meinzen-Derr, Megan Kaiser, Laura Stoutenborough, Qi Li, Imre Solti:
Pre-annotating Clinical Notes and Clinical Trial Announcements for Gold Standard Corpus Development: Evaluating the Impact on Annotation Speed and Potential Bias. 108
Posters
- Hsei-Wei Wang:
Small RNA Sequencing in microRNA Research. 109 - Bernard Gibaud, Germain Forestier, Hugues Benoit-Cattin, Frederic Cervenansky, Patrick Clarysse, Denis Friboulet, Alban Gaignard, Patrick Hugonnard, Carole Lartizien, Hervé Liebgott, Johan Montagnat, Joachim Tabary, Tristan Glatard:
OntoVIP: An Ontology for the Annotation of Object Models Used for Medical Image Simulation. 110 - Neda Alipanah, Hyeoneui Kim, Lucila Ohno-Machado:
Building an Ontology of Phenotypes for Existing GWAS Studies. 111 - Marina Sokolova, Yasser Jafer, David Schramm:
Text Mining for Personal Health Information on Twitter. 112 - Nathan Salomonis:
AltAnalyze - An Optimized Platform for RNA-Seq Splicing and Domain-Level Analyses. 113 - Nathan Salomonis:
LineageProfiler: Automated Classification and Visualization of Cell Type Identity for Mammalian Transcriptomes. 114 - Ali Zifan, Brian E. Chapman:
Automatic Detection of Coronary Vessels Using Mutli-scale Texture Dictionaries. 115 - Jyh-Ying Peng, Yen-Jen Chen, Marc D. Green, Susan L. Forsburg, Chun-Nan Hsu:
Simultaneous Segmentation of Cell and Nucleus in Schizosaccharomyces pombe Images with Focus Gradient. 116 - Mayank Agarwal, Javed Mostafa:
Cohort Selection through Content-Based Image Retrieval: vfM A Case Study. 117 - Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar B. Wagholikar, Stephen T. Wu, Christopher G. Chute, Hongfang Liu, Scott R. Halgrim:
Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. 118 - Jose Eduardo Kroll, Jorge Estefano de Souza, Beatriz Stransky, Gustavo A. de Souza, Sandro J. de Souza:
Integrating Transcriptome and Proteome Information for the Analysis of Alternative Splicing. 119 - Zhuohui Gan, Jianwu Wang, Nathan Salomonis, Ilkay Altintas, Andrew D. McCulloch, Alexander C. Zambon:
MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray Data. 120 - Qingxiang Zhu, Hongkai Xiong, Xiaoqian Jiang:
Pulmonary Blood Vessels and Nodules Segmentation via Vessel Energy Function and Radius-Variable Sphere Model. 121 - Matthew Munoz, Alexander C. Zambon:
InSilico-ChIP: A Coregulation and Evolutionary Conservation Based Transcription Factor and Target Gene Predictor. 122 - Ko-Wei Lin, Melissa Tharp, Michael Conway, Mindy K. Ross, Alexander Hsieh, Hyeoneui Kim:
Feasibility of Using Clinical Element Models (CEM) to Standardize Phenotype Variables in the Database of Genotypes and Phenotypes (dbGaP). 123 - Prasanna Kumar Desikan, Nisheeth Srivastava, Tamara Winden, Tammie Lindquist, Heather Britt, Jaideep Srivastava:
Early Prediction of Potentially Preventable Events in Ambulatory Care Sensitive Admissions from Clinical Data. 124 - Allison B. McCoy, Dean F. Sittig, Adam Wright:
Comparison of Association Rule Mining and Crowdsourcing for Automated Generation of a Problem-Medication Knowledge Base. 125 - Karen Truong, Mike Conway:
A Study on Studies: Exploring the Metadata Associated with dbGaP Studies. 126 - Olga V. Patterson, Gail S. Kerr, J. Steuart Richards, Carl A. Nunziato, David D. Maron, Richard L. Amdur, Scott L. DuVall:
Identifying Provider Counseling Practices Using Natural Language Processing: Gout Example. 127 - Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Lijuan Cui, Samuel Cheng, Hongkai Xiong:
Privacy-Preserving Biometric System for Secure Fingerprint Authentication. 128 - Behrang Asadi, Daniel M. Tartakovsky, Mano Ram Maurya, Shankar Subramaniam:
Doubly Penalized LASSO for Reconstruction of Biological Networks. 129 - Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Lijuan Cui, Samuel Cheng:
SecUre Privacy-presERving Medical Image CompRessiOn (SUPERMICRO). 130 - Mei Liu, Michael E. Matheny, Yonghui Wu, Eugenia R. McPeek Hinz, Joshua C. Denny, Jonathan S. Schildcrout, Randolph A. Miller, Hua Xu:
Detecting Adverse Drug Reactions Using Inpatient Medication Orders and Laboratory Tests Data. 131 - Emily Silgard, Melissa Tharp, Rutu Mulkar-Mehta:
Temporal Relation Extraction from Medical Discharge Summaries. 132 - Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute:
A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data. 133 - Nafise Barzigar, Aminmohammad Roozgard, Pramode K. Verma, Samuel Cheng:
Removing Mixture Noise from Medical Images Using Block Matching Filtering and Low-Rank Matrix Completion. 134 - Brian E. Chapman, Wei Wei, Wendy Webber Chapman:
The Frequency of ConText Lexical Items in Diverse Medical Texts. 135 - Danielle L. Mowery, Pamela W. Jordan, Janyce Wiebe, Wendy Webber Chapman, Lin Liu:
Does Domain Knowledge Matter for Assertion Annotation in Clinical Texts? 136 - Vanderson Silva, Fabiana S. Santana, Beatriz Stransky, Sandro J. de Souza:
Modelling the Effects of Genetic Changes in Tumour Progression. 137 - Xiaoqian Jiang, Shuang Wang, Zhanglong Ji, Lucila Ohno-Machado, Li Xiong:
A Randomized Response Model for Privacy-Preserving Data Dissemination. 138 - Seemeen Karimi, Xiaoqian Jiang, Pamela C. Cosman, Harry E. Martz:
Evaluation of Segmentation Algorithms in CT Scanning. 139 - Alan Calvitti, Neal Farber, Yunan Chen, Danielle Zuest, Lin Liu, Kristin Bell, Barbara Gray, Zia Agha:
Temporal Analysis of Physicians' EHR Workflow during Outpatient Visits. 140 - Do Kyoon Kim, Hyunjung Shin, Je-Gun Joung, Su-Yeon Lee, Ju Han Kim:
Intra-relation Reconstruction from Inter-relation: miRNA to Gene Expression. 141 - Richard Rauscher:
Cloud Computing Considerations for Biomedical Applications. 142 - XiaoFeng Wang, Haixu Tang:
Privacy Protection in Sharing Personal Genome Sequencing Data. 143 - Salvatore Loguercio, Erik L. Clarke, Benjamin M. Good, Andrew I. Su:
A Task-Based Approach for Large-Scale Evaluation of the Gene Ontology. 144 - Benjamin M. Good, Salvatore Loguercio, Max Nanis, Andrew I. Su:
genegames.org: High-Throughput Access to Biological Knowledge and Reasoning through Online Games. 145 - Aaron Mandel, Michael Kamerick, Douglas Berman, Lisa Dahm:
University of California Research eXchange (UCReX): A Federated Cohort Discovery System. 146 - Brian E. Chapman, Mona Wong, Claudiu Farcas, Patrick Reynolds:
Annio: A Web-Based Tool for Annotating Medical Images with Ontologies. 147 - Jiao Li, Ritu Khare, Zhiyong Lu:
Improving Online Access to Drug-Related Information. 148 - Eugenia R. McPeek Hinz, Lisa Bastarache, Joshua C. Denny:
A General Purpose Phenotype Algorithm for Venous Thromboembolism Using Billing Codes and Natural Language Processing. 149 - Hariprasad Sampathkumar, Bo Luo, Xue-wen Chen:
Mining Adverse Drug Side-Effects from Online Medical Forums. 150
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