pycharm运行报错
通过以下的处理，实体识别和关系抽取融合成了一个序列标注问题
针对 DuIE2.0 任务中多条、交叠SPO这一抽取目标，比赛对标准的 ‘BIO’ 标注进行了扩展。 对于每个 token，根据其在实体span中的位置（包括B、I、O三种），我们为其打上三类标签，并且根据其所参与构建的predicate种类，将 B 标签进一步区分。给定 schema 集合，对于 N 种不同 predicate，以及头实体/尾实体两种情况，我们设计对应的共 2N 种 B 标签，再合并 I 和 O 标签，故每个 token 一共有 (2N+2) 个标签，如下图所示。
PaddleNLP实战——LIC2021关系抽取任务基线
信息抽取旨在从非结构化自然语言文本中提取结构化知识，如实体、关系、事件等。对于给定的自然语言句子，根据预先定义的schema集合，抽取出所有满足schema约束的SPO三元组。
例如，「妻子」关系的schema定义为： { S_TYPE: 人物, P: 妻子, O_TYPE: { @value: 人物 } }
该示例展示了如何使用PaddleNLP快速复现LIC2021关系抽取比赛基线并进阶优化基线。
In [ ]
# 安装paddlenlp最新版本
!pip install --upgrade paddlenlp
%cd relation_extraction/
关系抽取基线
针对 DuIE2.0 任务中多条、交叠SPO这一抽取目标，比赛对标准的 'BIO' 标注进行了扩展。 对于每个 token，根据其在实体span中的位置（包括B、I、O三种），我们为其打上三类标签，并且根据其所参与构建的predicate种类，将 B 标签进一步区分。给定 schema 集合，对于 N 种不同 predicate，以及头实体/尾实体两种情况，我们设计对应的共 2N 种 B 标签，再合并 I 和 O 标签，故每个 token 一共有 (2N+2) 个标签，如下图所示。
标注策略
评价方法
对测试集上参评系统输出的SPO结果和人工标注的SPO结果进行精准匹配，采用F1值作为评价指标。注意，对于复杂O值类型的SPO，必须所有槽位都精确匹配才认为该SPO抽取正确。针对部分文本中存在实体别名的问题，使用百度知识图谱的别名词典来辅助评测。F1值的计算方式如下：
F1 = (2 * P * R) / (P + R)，其中
P = 测试集所有句子中预测正确的SPO个数 / 测试集所有句子中预测出的SPO个数
R = 测试集所有句子中预测正确的SPO个数 / 测试集所有句子中人工标注的SPO个数
快速复现基线Step1：构建模型
该任务可以看作一个序列标注任务，所以基线模型采用的是ERNIE序列标注模型。
PaddleNLP提供了ERNIE预训练模型常用序列标注模型，可以通过指定模型名字完成一键加载。PaddleNLP为了方便用户处理数据，内置了对于各个预训练模型对应的Tokenizer，可以完成文本token化，转token ID，文本长度截断等操作。
文本数据处理直接调用tokenizer即可输出模型所需输入数据。
In [ ]
import os
import json
from paddlenlp.transformers import ErnieForTokenClassification, ErnieTokenizer
label_map_path = os.path.join('data', "predicate2id.json")
if not (os.path.exists(label_map_path) and os.path.isfile(label_map_path)):
sys.exit("{} dose not exists or is not a file.".format(label_map_path))
with open(label_map_path, 'r', encoding='utf8') as fp:
label_map = json.load(fp)
num_classes = (len(label_map.keys()) - 2) * 2 + 2
model = ErnieForTokenClassification.from_pretrained("ernie-1.0", num_classes=(len(label_map) - 2) * 2 + 2)
tokenizer = ErnieTokenizer.from_pretrained("ernie-1.0")
inputs = tokenizer(text="请输入测试样例", max_seq_len=20)
快速复现基线Step2：加载并处理数据
从比赛官网下载数据集，解压存放于data/目录下并重命名为train_data.json, dev_data.json, test_data.json.
我们可以加载自定义数据集。通过继承paddle.io.Dataset，自定义实现__getitem__ 和 __len__两个方法。
In [ ]
from typing import Optional, List, Union, Dict
import numpy as np
import paddle
from tqdm import tqdm
from paddlenlp.utils.log import logger
from data_loader import parse_label, DataCollator, convert_example_to_feature
from extract_chinese_and_punct import ChineseAndPunctuationExtractor
class DuIEDataset(paddle.io.Dataset):
"""
Dataset of DuIE.
"""
def __init__(
self,
input_ids: List[Union[List[int], np.ndarray]],
seq_lens: List[Union[List[int], np.ndarray]],
tok_to_orig_start_index: List[Union[List[int], np.ndarray]],
tok_to_orig_end_index: List[Union[List[int], np.ndarray]],
labels: List[Union[List[int], np.ndarray, List[str], List[Dict]]]):
super(DuIEDataset, self).__init__()
self.input_ids = input_ids
self.seq_lens = seq_lens
self.tok_to_orig_start_index = tok_to_orig_start_index
self.tok_to_orig_end_index = tok_to_orig_end_index
self.labels = labels
def __len__(self):
if isinstance(self.input_ids, np.ndarray):
return self.input_ids.shape[0]
else:
return len(self.input_ids)
def __getitem__(self, item):
return {
"input_ids": np.array(self.input_ids[item]),
"seq_lens": np.array(self.seq_lens[item]),
"tok_to_orig_start_index":
np.array(self.tok_to_orig_start_index[item]),
"tok_to_orig_end_index": np.array(self.tok_to_orig_end_index[item]),
# If model inputs is generated in `collate_fn`, delete the data type casting.
"labels": np.array(
self.labels[item], dtype=np.float32),
}
@classmethod
def from_file(cls,
file_path: Union[str, os.PathLike],
tokenizer: ErnieTokenizer,
max_length: Optional[int]=512,
pad_to_max_length: Optional[bool]=None):
assert os.path.exists(file_path) and os.path.isfile(
file_path), f"{file_path} dose not exists or is not a file."
label_map_path = os.path.join(
os.path.dirname(file_path), "predicate2id.json")
assert os.path.exists(label_map_path) and os.path.isfile(
label_map_path
), f"{label_map_path} dose not exists or is not a file."
with open(label_map_path, 'r', encoding='utf8') as fp:
label_map = json.load(fp)
chineseandpunctuationextractor = ChineseAndPunctuationExtractor()
input_ids, seq_lens, tok_to_orig_start_index, tok_to_orig_end_index, labels = (
[] for _ in range(5))
dataset_scale = sum(1 for line in open(file_path, 'r'))
logger.info("Preprocessing data, loaded from %s" % file_path)
with open(file_path, "r", encoding="utf-8") as fp:
lines = fp.readlines()
for line in tqdm(lines):
example = json.loads(line)
input_feature = convert_example_to_feature(
example, tokenizer, chineseandpunctuationextractor,
label_map, max_length, pad_to_max_length)
input_ids.append(input_feature.input_ids)
seq_lens.append(input_feature.seq_len)
tok_to_orig_start_index.append(
input_feature.tok_to_orig_start_index)
tok_to_orig_end_index.append(
input_feature.tok_to_orig_end_index)
labels.append(input_feature.labels)
return cls(input_ids, seq_lens, tok_to_orig_start_index,
tok_to_orig_end_index, labels)
In [ ]
data_path = 'data'
batch_size = 32
max_seq_length = 128
train_file_path = os.path.join(data_path, 'train_data.json')
train_dataset = DuIEDataset.from_file(
train_file_path, tokenizer, max_seq_length, True)
train_batch_sampler = paddle.io.BatchSampler(
train_dataset, batch_size=batch_size, shuffle=True, drop_last=True)
collator = DataCollator()
train_data_loader = paddle.io.DataLoader(
dataset=train_dataset,
batch_sampler=train_batch_sampler,
collate_fn=collator)
eval_file_path = os.path.join(data_path, 'dev_data.json')
test_dataset = DuIEDataset.from_file(
eval_file_path, tokenizer, max_seq_length, True)
test_batch_sampler = paddle.io.BatchSampler(
test_dataset, batch_size=batch_size, shuffle=False, drop_last=True)
test_data_loader = paddle.io.DataLoader(
dataset=test_dataset,
batch_sampler=test_batch_sampler,
collate_fn=collator)
快速复现基线Step3：定义损失函数和优化器，开始训练
在该基线上，我们选择均方误差作为损失函数，使用paddle.optimizer.AdamW作为优化器。
在训练过程中，模型保存在当前目录checkpoints文件夹下。同时在训练的同时使用官方评测脚本进行评估，输出P/R/F1指标。 在验证集上F1可以达到69.42。
In [ ]
import paddle.nn as nn
class BCELossForDuIE(nn.Layer):
def __init__(self, ):
super(BCELossForDuIE, self).__init__()
self.criterion = nn.BCEWithLogitsLoss(reduction='none')
def forward(self, logits, labels, mask):
loss = self.criterion(logits, labels)
mask = paddle.cast(mask, 'float32')
loss = loss * mask.unsqueeze(-1)
loss = paddle.sum(loss.mean(axis=2), axis=1) / paddle.sum(mask, axis=1)
loss = loss.mean()
return loss
In [ ]
from utils import write_prediction_results, get_precision_recall_f1, decoding
@paddle.no_grad()
def evaluate(model, criterion, data_loader, file_path, mode):
"""
mode eval:
eval on development set and compute P/R/F1, called between training.
mode predict:
eval on development / test set, then write predictions to \
predict_test.json and predict_test.json.zip \
under /home/aistudio/relation_extraction/data dir for later submission or evaluation.
"""
example_all = []
with open(file_path, "r", encoding="utf-8") as fp:
for line in fp:
example_all.append(json.loads(line))
id2spo_path = os.path.join(os.path.dirname(file_path), "id2spo.json")
with open(id2spo_path, 'r', encoding='utf8') as fp:
id2spo = json.load(fp)
model.eval（)
loss_all = 0
eval_steps = 0
formatted_outputs = []
current_idx = 0
for batch in tqdm(data_loader, total=len(data_loader)):
eval_steps += 1
input_ids, seq_len, tok_to_orig_start_index, tok_to_orig_end_index, labels = batch
logits = model(input_ids=input_ids)
mask = (input_ids != 0).logical_and((input_ids != 1)).logical_and((input_ids != 2))
loss = criterion(logits, labels, mask)
loss_all += loss.numpy().item()
probs = F.sigmoid(logits)
logits_batch = probs.numpy()
seq_len_batch = seq_len.numpy()
tok_to_orig_start_index_batch = tok_to_orig_start_index.numpy()
tok_to_orig_end_index_batch = tok_to_orig_end_index.numpy()
formatted_outputs.extend(decoding(example_all[current_idx: current_idx+len(logits)],
id2spo,
logits_batch,
seq_len_batch,
tok_to_orig_start_index_batch,
tok_to_orig_end_index_batch))
current_idx = current_idx+len(logits)
loss_avg = loss_all / eval_steps
print("eval loss: %f" % (loss_avg))
if mode == "predict":
predict_file_path = os.path.join("/home/aistudio/relation_extraction/data", 'predictions.json')
else:
predict_file_path = os.path.join("/home/aistudio/relation_extraction/data", 'predict_eval.json')
predict_zipfile_path = write_prediction_results(formatted_outputs,
predict_file_path)
if mode == "eval":
precision, recall, f1 = get_precision_recall_f1(file_path,
predict_zipfile_path)
os.system('rm {} {}'.format(predict_file_path, predict_zipfile_path))
return precision, recall, f1
elif mode != "predict":
raise Exception("wrong mode for eval func")
In [ ]
from paddlenlp.transformers import LinearDecayWithWarmup
learning_rate = 2e-5
num_train_epochs = 5
warmup_ratio = 0.06
criterion = BCELossForDuIE()
# Defines learning rate strategy.
steps_by_epoch = len(train_data_loader)
num_training_steps = steps_by_epoch * num_train_epochs
lr_scheduler = LinearDecayWithWarmup(learning_rate, num_training_steps, warmup_ratio)
optimizer = paddle.optimizer.AdamW(
learning_rate=lr_scheduler,
parameters=model.parameters(),
apply_decay_param_fun=lambda x: x in [
p.name for n, p in model.named_parameters()
if not any(nd in n for nd in ["bias", "norm"])])
In [ ]
# 模型参数保存路径
!mkdir checkpoints
快速复现基线Step4：提交预测结果
将训练保存的模型加载后进行预测。
NOTE: 注意设置用于预测的模型参数路径。
In [ ]
import time
import paddle.nn.functional as F
# Starts training.
global_step = 0
logging_steps = 50
save_steps = 10000
num_train_epochs = 2
output_dir = 'checkpoints'
tic_train = time.time()
model.train()
for epoch in range(num_train_epochs):
print("\n=====start training of %d epochs=====" % epoch)
tic_epoch = time.time()
for step, batch in enumerate(train_data_loader):
input_ids, seq_lens, tok_to_orig_start_index, tok_to_orig_end_index, labels = batch
logits = model(input_ids=input_ids)
mask = (input_ids != 0).logical_and((input_ids != 1)).logical_and(
(input_ids != 2))
loss = criterion(logits, labels, mask)
loss.backward()
optimizer.step()
lr_scheduler.step()
optimizer.clear_gradients()
loss_item = loss.numpy().item()
if global_step % logging_steps == 0:
print(
"epoch: %d / %d, steps: %d / %d, loss: %f, speed: %.2f step/s"
% (epoch, num_train_epochs, step, steps_by_epoch,
loss_item, logging_steps / (time.time() - tic_train)))
tic_train = time.time()
if global_step % save_steps == 0 and global_step != 0:
print("\n=====start evaluating ckpt of %d steps=====" %
global_step)
precision, recall, f1 = evaluate(
model, criterion, test_data_loader, eval_file_path, "eval")
print("precision: %.2f\t recall: %.2f\t f1: %.2f\t" %
(100 * precision, 100 * recall, 100 * f1))
print("saving checkpoing model_%d.pdparams to %s " %
(global_step, output_dir))
paddle.save(model.state_dict(),
os.path.join(output_dir,
"model_%d.pdparams" % global_step))
model.train()
global_step += 1
tic_epoch = time.time() - tic_epoch
print("epoch time footprint: %d hour %d min %d sec" %
(tic_epoch // 3600, (tic_epoch % 3600) // 60, tic_epoch % 60))
# Does final evaluation.
print("\n=====start evaluating last ckpt of %d steps=====" %
global_step)
precision, recall, f1 = evaluate(model, criterion, test_data_loader,
eval_file_path, "eval")
print("precision: %.2f\t recall: %.2f\t f1: %.2f\t" %
(100 * precision, 100 * recall, 100 * f1))
paddle.save(model.state_dict(),
os.path.join(output_dir,
"model_%d.pdparams" % global_step))
print("\n=====training complete=====")
In [ ]
!bash predict.sh
预测结果会被保存在data/predictions.json，data/predictions.json.zip，其格式与原数据集文件一致。
之后可以使用官方评估脚本评估训练模型在dev_data.json上的效果。如：
python re_official_evaluation.py --golden_file=dev_data.json --predict_file=predicitons.json.zip [--alias_file alias_dict]
输出指标为Precision, Recall 和 F1，Alias file包含了合法的实体别名，最终评测的时候会使用，这里不予提供。
之后在test_data.json上预测，然后预测结果（.zip文件）至评测网站。
Tricks
尝试更多的预训练模型
基线采用的预训练模型为ERNIE，PaddleNLP提供了丰富的预训练模型，如BERT，RoBERTa，Electra，XLNet等 参考PaddleNLP预训练模型介绍
如可以选择RoBERTa large中文模型优化模型效果，只需更换模型和tokenizer即可无缝衔接。
In [ ]
from paddlenlp.transformers import RobertaForTokenClassification, RobertaTokenizer
model = RobertaForTokenClassification.from_pretrained(
"roberta-wwm-ext-large",
num_classes=(len(label_map) - 2) * 2 + 2)
tokenizer = RobertaTokenizer.from_pretrained("roberta-wwm-ext-large")
模型集成
使用多个模型进行训练预测，将各个模型预测结果进行融合。
本文章为转载内容，我们尊重原作者对文章享有的著作权。如有内容错误或侵权问题，欢迎原作者联系我们进行内容更正或删除文章。
