bgzip – Block compression/decompression utility
tabix – Generic indexer for TAB-delimited genome position files
SAMtools BCFtools are distributed as individual packages. The code uses HTSlib internally, but these source packages contain their own copies of htslib so they can be built independently.
HTSlib bgzip, htsfile, and tabix INSTALL to install them from a samtools or bcftools source package.
Download current source releases: samtools-1.2 bcftools-1.2 htslib-1.2.1
安装 bcftools 1.2, htslib-1.2.1
wget https://github.com/samtools/bcftools/releases/download/1.2/bcftools-1.2.tar.bz2
tar xvf bcftools-1.2.tar.bz2
cd bcftools-1.2
make
make install
cd htslib-1.2.1
make
make install
使用bgzip，tabix
bgzip -c file.vcf > file.vcf.gz
tabix -p vcf file.vcf.gz
REF:
http://sourceforge.net/projects/samtools/files/tabix/http://www.htslib.org/doc/tabix.html
https://github.com/samtools/bcftools/releases
http://samtools.github.io/bcftools/bcftools.html
