{"id":"https://openalex.org/W4391211897","doi":"https://doi.org/10.48550/arxiv.2401.12074","title":"DeepCERES: A Deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI","display_name":"DeepCERES: A Deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4391211897","doi":"https://doi.org/10.48550/arxiv.2401.12074"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://arxiv.org/abs/2401.12074","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":["Cornell University"],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false},"type":"preprint","type_crossref":"posted-content","indexed_in":["arxiv","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/abs/2401.12074","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093734242","display_name":"Sergio Morell-Ortega","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Morell-Ortega, Sergio","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093734241","display_name":"Marina Ruiz-Perez","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruiz-Perez, Marina","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028134849","display_name":"Mari\u00e9n Gadea","orcid":"https://orcid.org/0000-0002-7553-6876"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gadea, Marien","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025183532","display_name":"Roberto Vivo-Hernando","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vivo-Hernando, Roberto","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011159515","display_name":"G. Rubio","orcid":"https://orcid.org/0000-0003-2132-834X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rubio, Gregorio","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027708184","display_name":"Fernando Aparici","orcid":"https://orcid.org/0000-0002-1012-9073"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Aparici, Fernando","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068613158","display_name":"Mar\u00eda de la Iglesia-Vay\u00e1","orcid":"https://orcid.org/0000-0003-4505-8399"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"de la Iglesia-Vaya, Maria","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104753696","display_name":"Gw\u00e9na\u00eblle Catheline","orcid":"https://orcid.org/0000-0003-1949-8913"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Catheline, Gwenaelle","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041744685","display_name":"Pierrick Coup\u00e9","orcid":"https://orcid.org/0000-0003-2709-3350"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Coup\u00e9, Pierrick","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5038198156","display_name":"Jos\u00e9 V. Manj\u00f3n","orcid":"https://orcid.org/0000-0001-6640-927X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Manj\u00f3n, Jos\u00e9 V.","raw_affiliation_strings":[],"affiliations":[]}],"institution_assertions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.999688,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":84,"max":92},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9908,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9908,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9826,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10542","display_name":"Vestibular and auditory disorders","score":0.9597,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness","score":0.54737663}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.77733886},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7174861},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.69982046},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.62358373},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.54737663},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.49206847},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.44482383},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.43731162},{"id":"https://openalex.org/C2779652256","wikidata":"https://www.wikidata.org/wiki/Q130983","display_name":"Cerebellum","level":2,"score":0.43582532},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.42315724},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.36716682},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.07542327},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"is_oa":true,"landing_page_url":"https://arxiv.org/abs/2401.12074","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":["Cornell University"],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false},{"is_oa":true,"landing_page_url":"http://arxiv.org/abs/2401.12074","pdf_url":"http://arxiv.org/pdf/2401.12074","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":["Cornell University"],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false},{"is_oa":false,"landing_page_url":"https://api.datacite.org/dois/10.48550/arxiv.2401.12074","pdf_url":null,"source":{"id":"https://openalex.org/S4393179698","display_name":"DataCite API","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210145204","host_organization_name":"DataCite","host_organization_lineage":["https://openalex.org/I4210145204"],"host_organization_lineage_names":["DataCite"],"type":"metadata"},"license":null,"license_id":null,"version":null}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://arxiv.org/abs/2401.12074","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":["Cornell University"],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false},"sustainable_development_goals":[],"grants":[],"datasets":[],"versions":[],"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W62490179","https://openalex.org/W5922282","https://openalex.org/W563589758","https://openalex.org/W4388311650","https://openalex.org/W4245343541","https://openalex.org/W2954004777","https://openalex.org/W2951102138","https://openalex.org/W2386077341","https://openalex.org/W2071596622","https://openalex.org/W1974056099"],"abstract_inverted_index":{"This":[0],"paper":[1],"introduces":[2],"a":[3,40,55,132,144,167],"novel":[4],"multimodal":[5,41],"and":[6,42,73,86,141],"high-resolution":[7],"human":[8],"brain":[9],"cerebellum":[10,33,60,97],"lobule":[11,34,98],"segmentation":[12,35,99],"method.":[13],"Unlike":[14],"current":[15],"tools":[16],"that":[17],"operate":[18],"at":[19,172],"standard":[20,173],"resolution":[21,44,71],"($1":[22],"\\text{":[23,46],"mm}^{3}$)":[24,47],"or":[25],"using":[26],"mono-modal":[27],"data,":[28],"the":[29,37,52,66,89,95,112,156,160],"proposed":[30,67,90,157],"method":[31,68,91,158],"improves":[32],"through":[36],"use":[38],"of":[39,57,80],"ultra-high":[43,70],"($0.125":[45],"training":[48],"dataset.":[49],"To":[50],"develop":[51],"method,":[53],"first,":[54],"database":[56],"semi-automatically":[58],"labelled":[59],"lobules":[61],"was":[62],"created":[63],"to":[64,92,153,159],"train":[65],"with":[69,126],"T1":[72,169],"T2":[74],"MR":[75,170],"images.":[76],"Then,":[77],"an":[78],"ensemble":[79],"deep":[81,124],"networks":[82],"has":[83,150],"been":[84,151],"designed":[85],"developed,":[87],"allowing":[88],"excel":[93],"in":[94],"complex":[96],"task,":[100],"improving":[101],"precision":[102,140],"while":[103],"being":[104],"memory":[105],"efficient.":[106],"Notably,":[107],"our":[108],"approach":[109],"deviates":[110],"from":[111,135],"traditional":[113],"U-Net":[114],"model":[115],"by":[116],"exploring":[117],"alternative":[118],"architectures.":[119],"We":[120],"have":[121],"also":[122],"integrated":[123],"learning":[125,129],"classical":[127],"machine":[128],"methods":[130],"incorporating":[131],"priori":[133],"knowledge":[134],"multi-atlas":[136],"segmentation,":[137],"which":[138],"improved":[139],"robustness.":[142],"Finally,":[143],"new":[145],"online":[146],"pipeline,":[147],"named":[148],"DeepCERES,":[149],"developed":[152],"make":[154],"available":[155],"scientific":[161],"community":[162],"requiring":[163],"as":[164],"input":[165],"only":[166],"single":[168],"image":[171],"resolution.":[174]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W4391211897","counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-01-04T13:12:35.942981","created_date":"2024-01-25"}