{"id":"https://openalex.org/W3200899627","doi":"https://doi.org/10.32614/rj-2023-020","title":"The openVA Toolkit for Verbal Autopsies","display_name":"The openVA Toolkit for Verbal Autopsies","publication_year":2023,"publication_date":"2023-02-25","ids":{"openalex":"https://openalex.org/W3200899627","doi":"https://doi.org/10.32614/rj-2023-020","mag":"3200899627","pmid":"https://pubmed.ncbi.nlm.nih.gov/37974934"},"language":"en","primary_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2023-020","pdf_url":"https://journal.r-project.org/articles/RJ-2023-020/openVA-RJ-R1.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},"type":"article","type_crossref":"journal-article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journal.r-project.org/articles/RJ-2023-020/openVA-RJ-R1.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083814134","display_name":"Zehang Li","orcid":"https://orcid.org/0000-0001-9551-9638"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zehang Richard Li","raw_affiliation_strings":["University of California, Santa Cruz"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Cruz","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032239786","display_name":"Jason Thomas","orcid":"https://orcid.org/0000-0002-7694-3262"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason Thomas","raw_affiliation_strings":["The Ohio State University"],"affiliations":[{"raw_affiliation_string":"The Ohio State University","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003339958","display_name":"Eungang Choi","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eungang Choi","raw_affiliation_strings":["The Ohio State University"],"affiliations":[{"raw_affiliation_string":"The Ohio State University","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015326615","display_name":"Tyler H. McCormick","orcid":"https://orcid.org/0000-0002-6490-1129"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tyler H. McCormick","raw_affiliation_strings":["University of Washington"],"affiliations":[{"raw_affiliation_string":"University of Washington","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063372237","display_name":"Samuel J. Clark","orcid":"https://orcid.org/0000-0002-4929-6231"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel J Clark","raw_affiliation_strings":["The Ohio State University"],"affiliations":[{"raw_affiliation_string":"The Ohio State University","institution_ids":["https://openalex.org/I52357470"]}]}],"institution_assertions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":5.858,"has_fulltext":true,"fulltext_origin":"pdf","cited_by_count":4,"citation_normalized_percentile":{"value":0.725094,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":90},"biblio":{"volume":"14","issue":"4","first_page":"316","last_page":"334"},"is_retracted":false,"is_paratext":false,"primary_topic":{"id":"https://openalex.org/T12011","display_name":"Insurance, Mortality, Demography, Risk Management","score":0.952,"subfield":{"id":"https://openalex.org/subfields/3317","display_name":"Demography"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12011","display_name":"Insurance, Mortality, Demography, Risk Management","score":0.952,"subfield":{"id":"https://openalex.org/subfields/3317","display_name":"Demography"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.9462,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12296","display_name":"Autopsy Techniques and Outcomes","score":0.9378,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.8745918},{"id":"https://openalex.org/keywords/verbal-autopsy","display_name":"Verbal autopsy","score":0.5232429}],"concepts":[{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.8745918},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.84337366},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.701183},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.60820776},{"id":"https://openalex.org/C2781410689","wikidata":"https://www.wikidata.org/wiki/Q17370247","display_name":"Verbal autopsy","level":4,"score":0.5232429},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5006819},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4711629},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.45888644},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42627937},{"id":"https://openalex.org/C29374701","wikidata":"https://www.wikidata.org/wiki/Q1931388","display_name":"Cause of death","level":3,"score":0.30900377},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18926793},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.17051569},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.16800994},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13350585},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.122451544},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.08252263},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2023-020","pdf_url":"https://journal.r-project.org/articles/RJ-2023-020/openVA-RJ-R1.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},{"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10653343","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false},{"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37974934","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_indexed_in_scopus":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":["National Institutes of Health"],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false}],"best_oa_location":{"is_oa":true,"landing_page_url":"https://doi.org/10.32614/rj-2023-020","pdf_url":"https://journal.r-project.org/articles/RJ-2023-020/openVA-RJ-R1.pdf","source":{"id":"https://openalex.org/S2489169438","display_name":"The R Journal","issn_l":"2073-4859","issn":["2073-4859"],"is_oa":true,"is_in_doaj":false,"is_indexed_in_scopus":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.51}],"grants":[],"datasets":[],"versions":[],"referenced_works_count":39,"referenced_works":["https://openalex.org/W148876518","https://openalex.org/W1760646631","https://openalex.org/W1987615978","https://openalex.org/W1996559588","https://openalex.org/W2085465367","https://openalex.org/W2096675833","https://openalex.org/W2129381080","https://openalex.org/W2133919899","https://openalex.org/W2137532674","https://openalex.org/W2143092728","https://openalex.org/W2146985955","https://openalex.org/W2164561875","https://openalex.org/W2175727069","https://openalex.org/W2195279081","https://openalex.org/W2198651274","https://openalex.org/W2553854611","https://openalex.org/W2582743722","https://openalex.org/W2782666904","https://openalex.org/W2947667755","https://openalex.org/W2959425712","https://openalex.org/W2975699996","https://openalex.org/W2994924112","https://openalex.org/W2999799802","https://openalex.org/W3006251269","https://openalex.org/W3017092560","https://openalex.org/W3133303015","https://openalex.org/W3203835934","https://openalex.org/W4200629674","https://openalex.org/W4250063794","https://openalex.org/W4285342114","https://openalex.org/W4303041384","https://openalex.org/W4392147484","https://openalex.org/W4399514155","https://openalex.org/W4399525293","https://openalex.org/W4399547610","https://openalex.org/W4399590402","https://openalex.org/W4399591057","https://openalex.org/W4399638148","https://openalex.org/W4399649370"],"related_works":["https://openalex.org/W4288098562","https://openalex.org/W2621207485","https://openalex.org/W2420006437","https://openalex.org/W2309996175","https://openalex.org/W2215011246","https://openalex.org/W2123894763","https://openalex.org/W2009801490","https://openalex.org/W1992249449","https://openalex.org/W1988883245","https://openalex.org/W1541733959"],"abstract_inverted_index":{"Verbal":[0],"autopsy":[1],"(VA)":[2],"is":[3,131],"a":[4,41,53],"survey-based":[5],"tool":[6],"widely":[7,86,150],"used":[8,60,87,151],"to":[9,56,61,69,88,111],"infer":[10,62],"cause":[11],"of":[12,32,47,91,147,191],"death":[13,92],"(COD)":[14],"in":[15,76,180,198],"regions":[16],"without":[17],"complete-coverage":[18],"civil":[19],"registration":[20],"and":[21,35,49,68,71,85,104,114,138,159,162,170,187,196],"vital":[22],"statistics":[23],"systems.":[24],"In":[25],"such":[26],"settings,":[27],"many":[28],"deaths":[29],"happen":[30],"outside":[31],"medical":[33,42],"facilities":[34],"are":[36,59],"not":[37],"officially":[38],"documented":[39],"by":[40,52],"professional.":[43],"VA":[44,94,128,152],"surveys,":[45],"consisting":[46],"signs":[48],"symptoms":[50],"reported":[51],"person":[54],"close":[55],"the":[57,63,73,77,97,122,166,175,184,189,199],"decedent,":[58],"COD":[64,74],"for":[65,126],"an":[66,143],"individual,":[67],"estimate":[70],"monitor":[72],"distribution":[75],"population.":[78],"Several":[79],"classification":[80],"algorithms":[81],"have":[82],"been":[83],"developed":[84],"assign":[89],"causes":[90,169],"using":[93],"data.":[95],"However,":[96],"incompatibility":[98],"between":[99,168],"different":[100,116,156],"idiosyncratic":[101],"model":[102,192],"implementations":[103,179],"required":[105],"data":[106,129,139,157],"structure":[107],"makes":[108],"it":[109],"difficult":[110],"systematically":[112],"apply":[113],"compare":[115],"methods.":[117,153],"The":[118,172],"openVA":[119,185],"package":[120],"provides":[121,142],"first":[123],"standardized":[124],"framework":[125],"analyzing":[127],"that":[130],"compatible":[132],"with":[133],"all":[134],"openly":[135],"available":[136],"methods":[137],"structure.":[140],"It":[141,154],"open-source,":[144],"R":[145,181,200],"implementation":[146],"several":[148],"most":[149],"supports":[155],"input":[158],"output":[160],"formats,":[161],"customizable":[163],"information":[164],"about":[165],"associations":[167],"symptoms.":[171],"paper":[173],"discusses":[174],"relevant":[176],"algorithms,":[177],"their":[178],"packages":[182],"under":[183],"suite,":[186],"demonstrates":[188],"pipeline":[190],"fitting,":[193],"summary,":[194],"comparison,":[195],"visualization":[197],"environment.":[201]},"cited_by_api_url":"https://api.openalex.org/works?filter=cites:W3200899627","counts_by_year":[{"year":2024,"cited_by_count":4}],"updated_date":"2025-01-18T17:24:11.451726","created_date":"2021-09-27"}